Literature DB >> 12513520

Iron normal mode dynamics in a porphyrin-imidazole model for deoxyheme proteins.

Brajesh K Rai1, Stephen M Durbin, Earl W Prohofsky, J Timothy Sage, Mary K Ellison, W Robert Scheidt, Wolfgang Sturhahn, E Ercan Alp.   

Abstract

Iron vibrational modes of a deoxyheme protein model (2-methylimidazole)(tetraphenylporphinato)iron(II), [Fe(TPP)(2-MeImH)], have been studied by refining normal mode calculations to nuclear resonance vibrational spectroscopy (NRVS) data. The NRVS measurements give quantitative frequencies and iron amplitudes of all modes with significant Fe vibrational motion. Modes with in-plane displacement of iron are distinguished from those involving out-of-plane motion by measurements on oriented single-crystal samples. Normal modes having large overlaps with in-plane nu(42), nu(50), and nu(53) modes of the porphyrin core are identified, as well as several modes with large iron-imidazole stretch components. An out-of-plane mode at 78 cm(-1) shows significant doming of the porphyrin core, but the largest Fe doming motion arises from the coupling of phenyls and imidazole at 25 cm(-1).

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Year:  2002        PMID: 12513520     DOI: 10.1103/PhysRevE.66.051904

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  14 in total

1.  MoViES: molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids.

Authors:  Z W Cao; Y Xue; L Y Han; B Xie; H Zhou; C J Zheng; H H Lin; Y Z Chen
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

2.  Vibrational Dynamics of Biological Molecules: Multi-quantum Contributions.

Authors:  Bogdan M Leu; J Timothy Sage; Marek Z Zgierski; Graeme R A Wyllie; Mary K Ellison; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin
Journal:  J Phys Chem Solids       Date:  2005-12       Impact factor: 3.995

3.  Spectroscopic identification of reactive porphyrin motions.

Authors:  Alexander Barabanschikov; Alexander Demidov; Minoru Kubo; Paul M Champion; J Timothy Sage; Jiyong Zhao; Wolfgang Sturhahn; E Ercan Alp
Journal:  J Chem Phys       Date:  2011-07-07       Impact factor: 3.488

4.  Probing vibrational anisotropy with nuclear resonance vibrational spectroscopy.

Authors:  Jeffrey W Pavlik; Alexander Barabanschikov; Allen G Oliver; E Ercan Alp; Wolfgang Sturhahn; Jiyong Zhao; J Timothy Sage; W Robert Scheidt
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-14       Impact factor: 15.336

Review 5.  What Can Be Learned from Nuclear Resonance Vibrational Spectroscopy: Vibrational Dynamics and Hemes.

Authors:  W Robert Scheidt; Jianfeng Li; J Timothy Sage
Journal:  Chem Rev       Date:  2017-09-18       Impact factor: 60.622

6.  Electronic configuration assignment and the importance of low-lying excited states in high-spin imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Arne Roth; Mary K Ellison; Jin An; Christina M Ellis; Charles E Schulz; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2005-04-20       Impact factor: 15.419

7.  Explorations in metalloporphyrin stereochemistry, physical properties and beyond.

Authors:  W Robert Scheidt
Journal:  J Porphyr Phthalocyanines       Date:  2008       Impact factor: 1.811

8.  Hydrogen bonding effects on the electronic configuration of five-coordinate high-spin iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Bruce C Noll; Paula M B Piccoli; Arthur J Schultz; Charles E Schulz; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

9.  Quantitative vibrational dynamics of iron in nitrosyl porphyrins.

Authors:  Bogdan M Leu; Marek Z Zgierski; Graeme R A Wyllie; W Robert Scheidt; Wolfgang Sturhahn; E Ercan Alp; Stephen M Durbin; J Timothy Sage
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

10.  Nuclear resonance vibrational spectroscopy (NRVS) of rubredoxin and MoFe protein crystals.

Authors:  Yisong Guo; Eric Brecht; Kristen Aznavour; Jay C Nix; Yuming Xiao; Hongxin Wang; Simon J George; Robert Bau; Stephen Keable; John W Peters; Michael W W Adams; Francis Jenney; Wolfgang Sturhahn; Ercan E Alp; Jiyong Zhao; Yoshitaka Yoda; Stephen P Cramer
Journal:  Hyperfine Interact       Date:  2013-12
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