Literature DB >> 21606333

Helicase-DNA polymerase interaction is critical to initiate leading-strand DNA synthesis.

Huidong Zhang1, Seung-Joo Lee, Bin Zhu, Ngoc Q Tran, Stanley Tabor, Charles C Richardson.   

Abstract

Interactions between gene 4 helicase and gene 5 DNA polymerase (gp5) are crucial for leading-strand DNA synthesis mediated by the replisome of bacteriophage T7. Interactions between the two proteins that assure high processivity are known but the interactions essential to initiate the leading-strand DNA synthesis remain unidentified. Replacement of solution-exposed basic residues (K587, K589, R590, and R591) located on the front surface of gp5 with neutral asparagines abolishes the ability of gp5 and the helicase to mediate strand-displacement synthesis. This front basic patch in gp5 contributes to physical interactions with the acidic C-terminal tail of the helicase. Nonetheless, the altered polymerase is able to replace gp5 and continue ongoing strand-displacement synthesis. The results suggest that the interaction between the C-terminal tail of the helicase and the basic patch of gp5 is critical for initiation of strand-displacement synthesis. Multiple interactions of T7 DNA polymerase and helicase coordinate replisome movement.

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Year:  2011        PMID: 21606333      PMCID: PMC3111293          DOI: 10.1073/pnas.1106678108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  Cellular DNA replicases: components and dynamics at the replication fork.

Authors:  Aaron Johnson; Mike O'Donnell
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

2.  DNA synthesis provides the driving force to accelerate DNA unwinding by a helicase.

Authors:  Natalie M Stano; Yong-Joo Jeong; Ilker Donmez; Padmaja Tummalapalli; Mikhail K Levin; Smita S Patel
Journal:  Nature       Date:  2005-05-19       Impact factor: 49.962

3.  Essential residues in the C terminus of the bacteriophage T7 gene 2.5 single-stranded DNA-binding protein.

Authors:  Boriana Marintcheva; Samir M Hamdan; Seung-Joo Lee; Charles C Richardson
Journal:  J Biol Chem       Date:  2006-06-28       Impact factor: 5.157

4.  The C-terminal residues of bacteriophage T7 gene 4 helicase-primase coordinate helicase and DNA polymerase activities.

Authors:  Seung-Joo Lee; Boriana Marintcheva; Samir M Hamdan; Charles C Richardson
Journal:  J Biol Chem       Date:  2006-06-28       Impact factor: 5.157

5.  Oligomeric states of bacteriophage T7 gene 4 primase/helicase.

Authors:  Donald J Crampton; Melanie Ohi; Udi Qimron; Thomas Walz; Charles C Richardson
Journal:  J Mol Biol       Date:  2006-05-30       Impact factor: 5.469

Review 6.  Replisome architecture and dynamics in Escherichia coli.

Authors:  Mike O'Donnell
Journal:  J Biol Chem       Date:  2006-01-18       Impact factor: 5.157

7.  DNA primase acts as a molecular brake in DNA replication.

Authors:  Jong-Bong Lee; Richard K Hite; Samir M Hamdan; X Sunney Xie; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

8.  Characterization of a triple DNA polymerase replisome.

Authors:  Peter McInerney; Aaron Johnson; Francine Katz; Mike O'Donnell
Journal:  Mol Cell       Date:  2007-08-17       Impact factor: 17.970

Review 9.  Bacteriophage replication modules.

Authors:  Christoph Weigel; Harald Seitz
Journal:  FEMS Microbiol Rev       Date:  2006-05       Impact factor: 16.408

10.  Exchange of DNA polymerases at the replication fork of bacteriophage T7.

Authors:  Donald E Johnson; Masateru Takahashi; Samir M Hamdan; Seung-Joo Lee; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

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  29 in total

1.  Molecular interactions in the priming complex of bacteriophage T7.

Authors:  Arkadiusz W Kulczyk; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-29       Impact factor: 11.205

2.  Pseudomonas aeruginosa phage PaP1 DNA polymerase is an A-family DNA polymerase demonstrating ssDNA and dsDNA 3'-5' exonuclease activity.

Authors:  Binyan Liu; Shiling Gu; Nengsong Liang; Mei Xiong; Qizhen Xue; Shuguang Lu; Fuquan Hu; Huidong Zhang
Journal:  Virus Genes       Date:  2016-04-06       Impact factor: 2.332

3.  Bypass of a nick by the replisome of bacteriophage T7.

Authors:  Bin Zhu; Seung-Joo Lee; Charles C Richardson
Journal:  J Biol Chem       Date:  2011-06-23       Impact factor: 5.157

4.  Cryo-EM structure of the replisome reveals multiple interactions coordinating DNA synthesis.

Authors:  Arkadiusz W Kulczyk; Arne Moeller; Peter Meyer; Piotr Sliz; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

5.  An interaction between DNA polymerase and helicase is essential for the high processivity of the bacteriophage T7 replisome.

Authors:  Arkadiusz W Kulczyk; Barak Akabayov; Seung-Joo Lee; Mihnea Bostina; Steven A Berkowitz; Charles C Richardson
Journal:  J Biol Chem       Date:  2012-09-12       Impact factor: 5.157

6.  Heterohexamer of 56- and 63-kDa Gene 4 Helicase-Primase of Bacteriophage T7 in DNA Replication.

Authors:  Huidong Zhang; Seung-Joo Lee; Arkadiusz W Kulczyk; Bin Zhu; Charles C Richardson
Journal:  J Biol Chem       Date:  2012-08-10       Impact factor: 5.157

7.  Helicase and polymerase move together close to the fork junction and copy DNA in one-nucleotide steps.

Authors:  Manjula Pandey; Smita S Patel
Journal:  Cell Rep       Date:  2014-03-13       Impact factor: 9.423

8.  Single-molecule studies of polymerase dynamics and stoichiometry at the bacteriophage T7 replication machinery.

Authors:  Hylkje J Geertsema; Arkadiusz W Kulczyk; Charles C Richardson; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

Review 9.  Mechanisms of mutagenesis: DNA replication in the presence of DNA damage.

Authors:  Binyan Liu; Qizhen Xue; Yong Tang; Jia Cao; F Peter Guengerich; Huidong Zhang
Journal:  Mutat Res Rev Mutat Res       Date:  2016-04-07       Impact factor: 5.657

10.  Discrete interactions between bacteriophage T7 primase-helicase and DNA polymerase drive the formation of a priming complex containing two copies of DNA polymerase.

Authors:  Jamie R Wallen; Jerzy Majka; Tom Ellenberger
Journal:  Biochemistry       Date:  2013-05-31       Impact factor: 3.162

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