Literature DB >> 21701044

Bypass of a nick by the replisome of bacteriophage T7.

Bin Zhu1, Seung-Joo Lee, Charles C Richardson.   

Abstract

DNA polymerase and DNA helicase are essential components of DNA replication. The helicase unwinds duplex DNA to provide single-stranded templates for DNA synthesis by the DNA polymerase. In bacteriophage T7, movement of either the DNA helicase or the DNA polymerase alone terminates upon encountering a nick in duplex DNA. Using a minicircular DNA, we show that the helicase · polymerase complex can bypass a nick, albeit at reduced efficiency of 7%, on the non-template strand to continue rolling circle DNA synthesis. A gap in the non-template strand cannot be bypassed. The efficiency of bypass synthesis depends on the DNA sequence downstream of the nick. A nick on the template strand cannot be bypassed. Addition of T7 single-stranded DNA-binding protein to the complex stimulates nick bypass 2-fold. We propose that the association of helicase with the polymerase prevents dissociation of the helicase upon encountering a nick, allowing the helicase to continue unwinding of the duplex downstream of the nick.

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Year:  2011        PMID: 21701044      PMCID: PMC3151091          DOI: 10.1074/jbc.M111.252023

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

1.  Molecular mechanisms of the functional coupling of the helicase (gp41) and polymerase (gp43) of bacteriophage T4 within the DNA replication fork.

Authors:  E Delagoutte; P H von Hippel
Journal:  Biochemistry       Date:  2001-04-10       Impact factor: 3.162

2.  The importance of repairing stalled replication forks.

Authors:  M M Cox; M F Goodman; K N Kreuzer; D J Sherratt; S J Sandler; K J Marians
Journal:  Nature       Date:  2000-03-02       Impact factor: 49.962

3.  The 3'-tail of a forked-duplex sterically determines whether one or two DNA strands pass through the central channel of a replication-fork helicase.

Authors:  D L Kaplan
Journal:  J Mol Biol       Date:  2000-08-11       Impact factor: 5.469

Review 4.  Structure and function of hexameric helicases.

Authors:  S S Patel; K M Picha
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

5.  Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.

Authors:  G J Wuite; S B Smith; M Young; D Keller; C Bustamante
Journal:  Nature       Date:  2000-03-02       Impact factor: 49.962

6.  Direct role for the RNA polymerase domain of T7 primase in primer delivery.

Authors:  Bin Zhu; Seung-Joo Lee; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

7.  An in trans interaction at the interface of the helicase and primase domains of the hexameric gene 4 protein of bacteriophage T7 modulates their activities.

Authors:  Bin Zhu; Seung-Joo Lee; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-07-01       Impact factor: 5.157

8.  C-terminal phenylalanine of bacteriophage T7 single-stranded DNA-binding protein is essential for strand displacement synthesis by T7 DNA polymerase at a nick in DNA.

Authors:  Sharmistha Ghosh; Boriana Marintcheva; Masateru Takahashi; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-09-02       Impact factor: 5.157

9.  Helicase-DNA polymerase interaction is critical to initiate leading-strand DNA synthesis.

Authors:  Huidong Zhang; Seung-Joo Lee; Bin Zhu; Ngoc Q Tran; Stanley Tabor; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

10.  Response of the bacteriophage T4 replisome to noncoding lesions and regression of a stalled replication fork.

Authors:  Scott W Nelson; Stephen J Benkovic
Journal:  J Mol Biol       Date:  2010-06-25       Impact factor: 5.469

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  7 in total

Review 1.  Mechanisms of mutagenesis: DNA replication in the presence of DNA damage.

Authors:  Binyan Liu; Qizhen Xue; Yong Tang; Jia Cao; F Peter Guengerich; Huidong Zhang
Journal:  Mutat Res Rev Mutat Res       Date:  2016-04-07       Impact factor: 5.657

Review 2.  Gp2.5, the multifunctional bacteriophage T7 single-stranded DNA binding protein.

Authors:  Alfredo J Hernandez; Charles C Richardson
Journal:  Semin Cell Dev Biol       Date:  2018-03-28       Impact factor: 7.727

3.  Gene 5.5 protein of bacteriophage T7 in complex with Escherichia coli nucleoid protein H-NS and transfer RNA masks transfer RNA priming in T7 DNA replication.

Authors:  Bin Zhu; Seung-Joo Lee; Min Tan; En-Duo Wang; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-07       Impact factor: 11.205

4.  A Polycomb complex remains bound through DNA replication in the absence of other eukaryotic proteins.

Authors:  Bettina M Lengsfeld; Kayla N Berry; Sharmistha Ghosh; Masateru Takahashi; Nicole J Francis
Journal:  Sci Rep       Date:  2012-09-17       Impact factor: 4.379

Review 5.  Bacteriophage T7 DNA polymerase - sequenase.

Authors:  Bin Zhu
Journal:  Front Microbiol       Date:  2014-04-16       Impact factor: 5.640

6.  T7 replisome directly overcomes DNA damage.

Authors:  Bo Sun; Manjula Pandey; James T Inman; Yi Yang; Mikhail Kashlev; Smita S Patel; Michelle D Wang
Journal:  Nat Commun       Date:  2015-12-17       Impact factor: 14.919

7.  Structural Based Analyses of the JC Virus T-Antigen F258L Mutant Provides Evidence for DNA Dependent Conformational Changes in the C-Termini of Polyomavirus Origin Binding Domains.

Authors:  Gretchen Meinke; Paul J Phelan; Jong Shin; David Gagnon; Jacques Archambault; Andrew Bohm; Peter A Bullock
Journal:  PLoS Pathog       Date:  2016-01-06       Impact factor: 6.823

  7 in total

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