Literature DB >> 15902262

DNA synthesis provides the driving force to accelerate DNA unwinding by a helicase.

Natalie M Stano1, Yong-Joo Jeong, Ilker Donmez, Padmaja Tummalapalli, Mikhail K Levin, Smita S Patel.   

Abstract

Helicases are molecular motors that use the energy of nucleoside 5'-triphosphate (NTP) hydrolysis to translocate along a nucleic acid strand and catalyse reactions such as DNA unwinding. The ring-shaped helicase of bacteriophage T7 translocates along single-stranded (ss)DNA at a speed of 130 bases per second; however, T7 helicase slows down nearly tenfold when unwinding the strands of duplex DNA. Here, we report that T7 DNA polymerase, which is unable to catalyse strand displacement DNA synthesis by itself, can increase the unwinding rate to 114 base pairs per second, bringing the helicase up to similar speeds compared to its translocation along ssDNA. The helicase rate of stimulation depends upon the DNA synthesis rate and does not rely on specific interactions between T7 DNA polymerase and the carboxy-terminal residues of T7 helicase. Efficient duplex DNA synthesis is achieved only by the combined action of the helicase and polymerase. The strand displacement DNA synthesis by the DNA polymerase depends on the unwinding activity of the helicase, which provides ssDNA template. The rapid trapping of the ssDNA bases by the DNA synthesis activity of the polymerase in turn drives the helicase to move forward through duplex DNA at speeds similar to those observed along ssDNA.

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Year:  2005        PMID: 15902262      PMCID: PMC1563444          DOI: 10.1038/nature03615

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  23 in total

1.  Reconstitution of a minimal mtDNA replisome in vitro.

Authors:  Jenny A Korhonen; Xuan Hoi Pham; Mina Pellegrini; Maria Falkenberg
Journal:  EMBO J       Date:  2004-05-27       Impact factor: 11.598

2.  The Escherichia coli preprimosome and DNA B helicase can form replication forks that move at the same rate.

Authors:  M Mok; K J Marians
Journal:  J Biol Chem       Date:  1987-12-05       Impact factor: 5.157

3.  Coordinated leading and lagging strand DNA synthesis on a minicircular template.

Authors:  J Lee; P D Chastain; T Kusakabe; J D Griffith; C C Richardson
Journal:  Mol Cell       Date:  1998-06       Impact factor: 17.970

4.  The acidic carboxyl terminus of the bacteriophage T7 gene 4 helicase/primase interacts with T7 DNA polymerase.

Authors:  S M Notarnicola; H L Mulcahy; J Lee; C C Richardson
Journal:  J Biol Chem       Date:  1997-07-18       Impact factor: 5.157

5.  Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase.

Authors:  J A Ali; T M Lohman
Journal:  Science       Date:  1997-01-17       Impact factor: 47.728

6.  The bacteriophage T4 DNA replication fork. Only DNA helicase is required for leading strand DNA synthesis by the DNA polymerase holoenzyme.

Authors:  T A Cha; B M Alberts
Journal:  J Biol Chem       Date:  1989-07-25       Impact factor: 5.157

7.  Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant.

Authors:  S S Patel; I Wong; K A Johnson
Journal:  Biochemistry       Date:  1991-01-15       Impact factor: 3.162

8.  DNA-dependent nucleoside 5'-triphosphatase activity of the gene 4 protein of bacteriophage T7.

Authors:  S W Matson; C C Richardson
Journal:  J Biol Chem       Date:  1983-11-25       Impact factor: 5.157

9.  The DNA-unwinding mechanism of the ring helicase of bacteriophage T7.

Authors:  Yong-Joo Jeong; Mikhail K Levin; Smita S Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-03       Impact factor: 11.205

10.  The gene 4 protein of bacteriophage T7. Characterization of helicase activity.

Authors:  S W Matson; S Tabor; C C Richardson
Journal:  J Biol Chem       Date:  1983-11-25       Impact factor: 5.157

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  81 in total

1.  DnaB helicase activity is modulated by DNA geometry and force.

Authors:  Noah Ribeck; Daniel L Kaplan; Irina Bruck; Omar A Saleh
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

2.  Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase.

Authors:  Daniel S Johnson; Lu Bai; Benjamin Y Smith; Smita S Patel; Michelle D Wang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

3.  Mrc1 and Tof1 regulate DNA replication forks in different ways during normal S phase.

Authors:  Ben Hodgson; Arturo Calzada; Karim Labib
Journal:  Mol Biol Cell       Date:  2007-07-25       Impact factor: 4.138

Review 4.  Global regulation of genome duplication in eukaryotes: an overview from the epifluorescence microscope.

Authors:  John Herrick; Aaron Bensimon
Journal:  Chromosoma       Date:  2008-01-16       Impact factor: 4.316

5.  Single strand binding proteins increase the processivity of DNA unwinding by the hepatitis C virus helicase.

Authors:  Vaishnavi Rajagopal; Smita S Patel
Journal:  J Mol Biol       Date:  2007-11-01       Impact factor: 5.469

6.  Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism.

Authors:  Timothée Lionnet; Michelle M Spiering; Stephen J Benkovic; David Bensimon; Vincent Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-05       Impact factor: 11.205

7.  Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase.

Authors:  Chiara Indiani; Lance D Langston; Olga Yurieva; Myron F Goodman; Mike O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-11       Impact factor: 11.205

8.  Active DNA unwinding dynamics during processive DNA replication.

Authors:  José A Morin; Francisco J Cao; José M Lázaro; J Ricardo Arias-Gonzalez; José M Valpuesta; José L Carrascosa; Margarita Salas; Borja Ibarra
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-09       Impact factor: 11.205

9.  Residues in the central beta-hairpin of the DNA helicase of bacteriophage T7 are important in DNA unwinding.

Authors:  Ajit K Satapathy; Anna B Kochaniak; Sourav Mukherjee; Donald J Crampton; Antoine van Oijen; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-29       Impact factor: 11.205

Review 10.  Isothermal DNA amplification in vitro: the helicase-dependent amplification system.

Authors:  Yong-Joo Jeong; Kkothanahreum Park; Dong-Eun Kim
Journal:  Cell Mol Life Sci       Date:  2009-07-24       Impact factor: 9.261

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