Literature DB >> 22977246

An interaction between DNA polymerase and helicase is essential for the high processivity of the bacteriophage T7 replisome.

Arkadiusz W Kulczyk1, Barak Akabayov, Seung-Joo Lee, Mihnea Bostina, Steven A Berkowitz, Charles C Richardson.   

Abstract

Synthesis of the leading DNA strand requires the coordinated activity of DNA polymerase and DNA helicase, whereas synthesis of the lagging strand involves interactions of these proteins with DNA primase. We present the first structural model of a bacteriophage T7 DNA helicase-DNA polymerase complex using a combination of small angle x-ray scattering, single-molecule, and biochemical methods. We propose that the protein-protein interface stabilizing the leading strand synthesis involves two distinct interactions: a stable binding of the helicase to the palm domain of the polymerase and an electrostatic binding of the carboxyl-terminal tail of the helicase to a basic patch on the polymerase. DNA primase facilitates binding of DNA helicase to ssDNA and contributes to formation of the DNA helicase-DNA polymerase complex by stabilizing DNA helicase.

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Year:  2012        PMID: 22977246      PMCID: PMC3493946          DOI: 10.1074/jbc.M112.410647

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  45 in total

1.  DNA primase acts as a molecular brake in DNA replication.

Authors:  Jong-Bong Lee; Richard K Hite; Samir M Hamdan; X Sunney Xie; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

2.  Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.

Authors:  S Doublié; S Tabor; A M Long; C C Richardson; T Ellenberger
Journal:  Nature       Date:  1998-01-15       Impact factor: 49.962

3.  Helicase-DNA polymerase interaction is critical to initiate leading-strand DNA synthesis.

Authors:  Huidong Zhang; Seung-Joo Lee; Bin Zhu; Ngoc Q Tran; Stanley Tabor; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

4.  Determining macromolecular assembly structures by molecular docking and fitting into an electron density map.

Authors:  Keren Lasker; Andrej Sali; Haim J Wolfson
Journal:  Proteins       Date:  2010-11-15

5.  A molecular handoff between bacteriophage T7 DNA primase and T7 DNA polymerase initiates DNA synthesis.

Authors:  Masato Kato; Takuhiro Ito; Gerhard Wagner; Tom Ellenberger
Journal:  J Biol Chem       Date:  2004-05-08       Impact factor: 5.157

6.  Exchange of DNA polymerases at the replication fork of bacteriophage T7.

Authors:  Donald E Johnson; Masateru Takahashi; Samir M Hamdan; Seung-Joo Lee; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

7.  The nucleotide binding site of the helicase/primase of bacteriophage T7. Interaction of mutant and wild-type proteins.

Authors:  S M Notarnicola; C C Richardson
Journal:  J Biol Chem       Date:  1993-12-25       Impact factor: 5.157

8.  The gene 4 protein of bacteriophage T7. Characterization of helicase activity.

Authors:  S W Matson; S Tabor; C C Richardson
Journal:  J Biol Chem       Date:  1983-11-25       Impact factor: 5.157

9.  Mapping protein-protein interactions within a stable complex of DNA primase and DnaB helicase from Bacillus stearothermophilus.

Authors:  L E Bird; H Pan; P Soultanas; D B Wigley
Journal:  Biochemistry       Date:  2000-01-11       Impact factor: 3.162

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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  17 in total

1.  Cryo-EM structure of the replisome reveals multiple interactions coordinating DNA synthesis.

Authors:  Arkadiusz W Kulczyk; Arne Moeller; Peter Meyer; Piotr Sliz; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

2.  Helicase and polymerase move together close to the fork junction and copy DNA in one-nucleotide steps.

Authors:  Manjula Pandey; Smita S Patel
Journal:  Cell Rep       Date:  2014-03-13       Impact factor: 9.423

3.  Single-molecule studies of polymerase dynamics and stoichiometry at the bacteriophage T7 replication machinery.

Authors:  Hylkje J Geertsema; Arkadiusz W Kulczyk; Charles C Richardson; Antoine M van Oijen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

Review 4.  Evolution of replication machines.

Authors:  Nina Y Yao; Mike E O'Donnell
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-12-20       Impact factor: 8.250

5.  Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome.

Authors:  Jamie R Wallen; Hao Zhang; Caroline Weis; Weidong Cui; Brittni M Foster; Chris M W Ho; Michal Hammel; John A Tainer; Michael L Gross; Tom Ellenberger
Journal:  Structure       Date:  2017-01-03       Impact factor: 5.006

6.  Discrete interactions between bacteriophage T7 primase-helicase and DNA polymerase drive the formation of a priming complex containing two copies of DNA polymerase.

Authors:  Jamie R Wallen; Jerzy Majka; Tom Ellenberger
Journal:  Biochemistry       Date:  2013-05-31       Impact factor: 3.162

7.  Plant organellar DNA primase-helicase synthesizes RNA primers for organellar DNA polymerases using a unique recognition sequence.

Authors:  Antolín Peralta-Castro; Noe Baruch-Torres; Luis G Brieba
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

8.  Cooperative base pair melting by helicase and polymerase positioned one nucleotide from each other.

Authors:  Divya Nandakumar; Manjula Pandey; Smita S Patel
Journal:  Elife       Date:  2015-05-13       Impact factor: 8.140

Review 9.  A Replisome's journey through the bacterial chromosome.

Authors:  Thomas R Beattie; Rodrigo Reyes-Lamothe
Journal:  Front Microbiol       Date:  2015-06-05       Impact factor: 5.640

10.  Impact of macromolecular crowding on DNA replication.

Authors:  Barak Akabayov; Sabine R Akabayov; Seung-Joo Lee; Gerhard Wagner; Charles C Richardson
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

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