Literature DB >> 28223502

Cryo-EM structure of the replisome reveals multiple interactions coordinating DNA synthesis.

Arkadiusz W Kulczyk1, Arne Moeller2, Peter Meyer3, Piotr Sliz3, Charles C Richardson1.   

Abstract

We present a structure of the ∼650-kDa functional replisome of bacteriophage T7 assembled on DNA resembling a replication fork. A structure of the complex consisting of six domains of DNA helicase, five domains of RNA primase, two DNA polymerases, and two thioredoxin (processivity factor) molecules was determined by single-particle cryo-electron microscopy. The two molecules of DNA polymerase adopt a different spatial arrangement at the replication fork, reflecting their roles in leading- and lagging-strand synthesis. The structure, in combination with biochemical data, reveals molecular mechanisms for coordination of leading- and lagging-strand synthesis. Because mechanisms of DNA replication are highly conserved, the observations are relevant to other replication systems.

Entities:  

Keywords:  DNA polymerase; DNA replication; coordination of leading- and lagging-strands synthesis; cryo-EM structure; replisome

Mesh:

Substances:

Year:  2017        PMID: 28223502      PMCID: PMC5347612          DOI: 10.1073/pnas.1701252114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

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Authors:  Natalie M Stano; Yong-Joo Jeong; Ilker Donmez; Padmaja Tummalapalli; Mikhail K Levin; Smita S Patel
Journal:  Nature       Date:  2005-05-19       Impact factor: 49.962

2.  DNA primase acts as a molecular brake in DNA replication.

Authors:  Jong-Bong Lee; Richard K Hite; Samir M Hamdan; X Sunney Xie; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

3.  Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution.

Authors:  S Doublié; S Tabor; A M Long; C C Richardson; T Ellenberger
Journal:  Nature       Date:  1998-01-15       Impact factor: 49.962

4.  DNA is bound within the central hole to one or two of the six subunits of the T7 DNA helicase.

Authors:  X Yu; M M Hingorani; S S Patel; E H Egelman
Journal:  Nat Struct Biol       Date:  1996-09

5.  Helicase and polymerase move together close to the fork junction and copy DNA in one-nucleotide steps.

Authors:  Manjula Pandey; Smita S Patel
Journal:  Cell Rep       Date:  2014-03-13       Impact factor: 9.423

6.  Helicase-DNA polymerase interaction is critical to initiate leading-strand DNA synthesis.

Authors:  Huidong Zhang; Seung-Joo Lee; Bin Zhu; Ngoc Q Tran; Stanley Tabor; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

7.  The nucleotide binding site of the helicase/primase of bacteriophage T7. Interaction of mutant and wild-type proteins.

Authors:  S M Notarnicola; C C Richardson
Journal:  J Biol Chem       Date:  1993-12-25       Impact factor: 5.157

8.  The architecture of a eukaryotic replisome.

Authors:  Jingchuan Sun; Yi Shi; Roxana E Georgescu; Zuanning Yuan; Brian T Chait; Huilin Li; Michael E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2015-11-02       Impact factor: 15.369

9.  Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis.

Authors:  Samir M Hamdan; Joseph J Loparo; Masateru Takahashi; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2008-11-23       Impact factor: 49.962

10.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

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  7 in total

Review 1.  The ring-shaped hexameric helicases that function at DNA replication forks.

Authors:  Michael E O'Donnell; Huilin Li
Journal:  Nat Struct Mol Biol       Date:  2018-01-29       Impact factor: 15.369

2.  Residues located in the primase domain of the bacteriophage T7 primase-helicase are essential for loading the hexameric complex onto DNA.

Authors:  Alfredo J Hernandez; Seung-Joo Lee; Noah J Thompson; Jack D Griffith; Charles C Richardson
Journal:  J Biol Chem       Date:  2022-04-30       Impact factor: 5.486

3.  Perturbing cohesin dynamics drives MRE11 nuclease-dependent replication fork slowing.

Authors:  Denisse Carvajal-Maldonado; Andrea K Byrum; Jessica Jackson; Sarah Wessel; Delphine Lemaçon; Laure Guitton-Sert; Annabel Quinet; Stephanie Tirman; Simona Graziano; Jean-Yves Masson; David Cortez; Susana Gonzalo; Nima Mosammaparast; Alessandro Vindigni
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

4.  Structural basis for adPEO-causing mutations in the mitochondrial TWINKLE helicase.

Authors:  Bradley Peter; Geraldine Farge; Carlos Pardo-Hernandez; Stefan Tångefjord; Maria Falkenberg
Journal:  Hum Mol Genet       Date:  2019-04-01       Impact factor: 6.150

5.  Helicase promotes replication re-initiation from an RNA transcript.

Authors:  Bo Sun; Anupam Singh; Shemaila Sultana; James T Inman; Smita S Patel; Michelle D Wang
Journal:  Nat Commun       Date:  2018-06-13       Impact factor: 14.919

Review 6.  TWINKLE and Other Human Mitochondrial DNA Helicases: Structure, Function and Disease.

Authors:  Bradley Peter; Maria Falkenberg
Journal:  Genes (Basel)       Date:  2020-04-09       Impact factor: 4.096

Review 7.  DNA Helicase-Polymerase Coupling in Bacteriophage DNA Replication.

Authors:  Chen-Yu Lo; Yang Gao
Journal:  Viruses       Date:  2021-08-31       Impact factor: 5.048

  7 in total

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