Literature DB >> 15952889

Cellular DNA replicases: components and dynamics at the replication fork.

Aaron Johnson1, Mike O'Donnell.   

Abstract

DNA replicases are multicomponent machines that have evolved clever strategies to perform their function. Although the structure of DNA is elegant in its simplicity, the job of duplicating it is far from simple. At the heart of the replicase machinery is a heteropentameric AAA+ clamp-loading machine that couples ATP hydrolysis to load circular clamp proteins onto DNA. The clamps encircle DNA and hold polymerases to the template for processive action. Clamp-loader and sliding clamp structures have been solved in both prokaryotic and eukaryotic systems. The heteropentameric clamp loaders are circular oligomers, reflecting the circular shape of their respective clamp substrates. Clamps and clamp loaders also function in other DNA metabolic processes, including repair, checkpoint mechanisms, and cell cycle progression. Twin polymerases and clamps coordinate their actions with a clamp loader and yet other proteins to form a replisome machine that advances the replication fork.

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Year:  2005        PMID: 15952889     DOI: 10.1146/annurev.biochem.73.011303.073859

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  249 in total

Review 1.  A tough row to hoe: when replication forks encounter DNA damage.

Authors:  Darshil R Patel; Robert S Weiss
Journal:  Biochem Soc Trans       Date:  2018-12-04       Impact factor: 5.407

2.  Theoretical prediction of the binding free energy for mutants of replication protein A.

Authors:  Claudio Carra; Janapriya Saha; Francis A Cucinotta
Journal:  J Mol Model       Date:  2011-12-10       Impact factor: 1.810

Review 3.  Chromatin replication and epigenome maintenance.

Authors:  Constance Alabert; Anja Groth
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-23       Impact factor: 94.444

4.  Shining the spotlight on functional molecular complexes: The new science of single-molecule cell biology.

Authors:  Mark C Leake
Journal:  Commun Integr Biol       Date:  2010-09

5.  Primosomal proteins DnaD and DnaB are recruited to chromosomal regions bound by DnaA in Bacillus subtilis.

Authors:  Wiep Klaas Smits; Houra Merrikh; Carla Yaneth Bonilla; Alan D Grossman
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

Review 6.  Eukaryotic lagging strand DNA replication employs a multi-pathway mechanism that protects genome integrity.

Authors:  Lata Balakrishnan; Robert A Bambara
Journal:  J Biol Chem       Date:  2010-12-21       Impact factor: 5.157

7.  Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork.

Authors:  Andrew D Klocko; Jeremy W Schroeder; Brian W Walsh; Justin S Lenhart; Margery L Evans; Lyle A Simmons
Journal:  Mol Microbiol       Date:  2011-09-30       Impact factor: 3.501

8.  Replicative DNA polymerases promote active displacement of SSB proteins during lagging strand synthesis.

Authors:  Fernando Cerrón; Sara de Lorenzo; Kateryna M Lemishko; Grzegorz L Ciesielski; Laurie S Kaguni; Francisco J Cao; Borja Ibarra
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

9.  Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding.

Authors:  Davis Jose; Steven E Weitzel; Walter A Baase; Peter H von Hippel
Journal:  Nucleic Acids Res       Date:  2015-08-14       Impact factor: 16.971

Review 10.  Optical tweezers experiments resolve distinct modes of DNA-protein binding.

Authors:  Micah J McCauley; Mark C Williams
Journal:  Biopolymers       Date:  2009-04       Impact factor: 2.505

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