Literature DB >> 25484811

Crystal structure of 1-[2,4-bis(4-methoxy-phenyl)-3-azabicyclo[3.3.1]nonan-3-yl]ethanone.

V Shreevidhyaa Suressh1, S Sathya2, A Akila3, S Ponnuswamy3, G Usha2.   

Abstract

In the title compound, C24H29NO3, the aza-bicycle contains two six-membered rings, viz. a cyclo-hexane ring and a piperidine ring. The first adopts a chair conformation and the second a half-chair conformation. The dihedral angle between their mean planes is 86.21 (13)°, indicating that they are almost perpendicular to one another. The dihedral angle between the planes of the 4-meth-oxy-phenyl rings is 17.51 (13)°, and they make dihedral angles of 81.9 (3) and 81.3 (3)° with the ethan-1-one group. In the crystal, mol-ecules are linked by C-H⋯π inter-actions forming chains along [10-1].

Entities:  

Keywords:  aza­bicyclo­[3.3.1]nona­ne; crystal structure; cyclo­hexane ring; piperidine ring

Year:  2014        PMID: 25484811      PMCID: PMC4257259          DOI: 10.1107/S1600536814022545

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of piperidine derivatives, see: Barker et al. (2005 ▶); Hardick et al. (1996 ▶); Jeyaraman & Avila (1981 ▶); Parthiban, Aridoss et al. (2009 ▶); Parthiban, Rathika et al. (2010 ▶). For the crystal structures of similar compounds, see: Parthiban et al. (2008 ▶); Parthiban, Ramkumar et al. (2009 ▶, 2010 ▶).

Experimental

Crystal data

C24H29NO3 M = 379.48 Monoclinic, a = 7.6309 (13) Å b = 17.102 (3) Å c = 15.395 (2) Å β = 93.886 (5)° V = 2004.5 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.972, T max = 0.980 17249 measured reflections 4597 independent reflections 2524 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.267 S = 0.86 4597 reflections 253 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.31 e Å−3

Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814022545/su2798sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814022545/su2798Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814022545/su2798Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814022545/su2798fig1.tif The mol­ecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814022545/su2798fig2.tif A view of the crystal packing of the title compound, with C—H⋯π inter­actions indicted by dashed lines (see Table 1 for details). CCDC reference: 1029084 Additional supporting information: crystallographic information; 3D view; checkCIF report
C24H29NO3F(000) = 816
Mr = 379.48Dx = 1.258 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4597 reflections
a = 7.6309 (13) Åθ = 1.8–27.5°
b = 17.102 (3) ŵ = 0.08 mm1
c = 15.395 (2) ÅT = 293 K
β = 93.886 (5)°Block, colourless
V = 2004.5 (6) Å30.35 × 0.30 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer4597 independent reflections
Radiation source: fine-focus sealed tube2524 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.070
ω and φ scanθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→9
Tmin = 0.972, Tmax = 0.980k = −17→22
17249 measured reflectionsl = −11→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.267H-atom parameters constrained
S = 0.86w = 1/[σ2(Fo2) + (0.2P)2] where P = (Fo2 + 2Fc2)/3
4597 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C170.8638 (4)0.0399 (2)−0.3303 (2)0.0653 (9)
H17A0.90810.0196−0.38260.098*
H17B0.8454−0.0023−0.29090.098*
H17C0.94720.0760−0.30340.098*
O20.7019 (3)0.07911 (13)−0.35081 (12)0.0573 (6)
C10.5412 (3)0.29402 (17)0.00731 (18)0.0436 (7)
C20.6109 (4)0.32952 (18)−0.0732 (2)0.0568 (8)
H2A0.55570.3049−0.12400.085*
H2B0.73560.3217−0.07210.085*
H2C0.58570.3845−0.07480.085*
C30.3379 (3)0.21999 (15)0.08463 (15)0.0374 (6)
H30.31450.27160.10910.045*
C40.1578 (3)0.17762 (16)0.07593 (18)0.0433 (7)
H40.09320.19320.12610.052*
C50.0536 (3)0.20673 (18)−0.00516 (18)0.0484 (7)
H5A0.04750.2634−0.00460.058*
H5B−0.06520.1863−0.00710.058*
C60.1460 (3)0.17879 (15)−0.08472 (18)0.0427 (7)
H60.07330.1948−0.13660.051*
C70.3238 (3)0.22232 (15)−0.08655 (16)0.0367 (6)
H70.29470.2745−0.10950.044*
C80.1669 (4)0.08798 (17)0.07604 (19)0.0515 (8)
H8A0.23530.07060.12790.062*
H8B0.04920.06700.07810.062*
C90.2488 (4)0.05627 (17)−0.00362 (18)0.0504 (8)
H9A0.2391−0.0003−0.00460.061*
H9B0.37250.0697−0.00090.061*
C100.1580 (4)0.08982 (16)−0.0861 (2)0.0514 (7)
H10A0.22170.0739−0.13560.062*
H10B0.04040.0683−0.09390.062*
C110.4351 (3)0.18444 (14)−0.15337 (16)0.0369 (6)
C120.3798 (4)0.19133 (16)−0.24134 (17)0.0445 (7)
H120.28070.2210−0.25730.053*
C130.4695 (4)0.15478 (18)−0.30543 (17)0.0485 (7)
H130.42880.1591−0.36360.058*
C140.6198 (4)0.11180 (16)−0.28286 (17)0.0418 (6)
C150.6765 (4)0.10439 (16)−0.19611 (17)0.0453 (7)
H150.77690.0756−0.18020.054*
C160.5828 (3)0.14024 (16)−0.13281 (17)0.0433 (7)
H160.62120.1341−0.07460.052*
C180.4612 (3)0.17922 (15)0.15212 (16)0.0374 (6)
C190.4146 (4)0.17657 (17)0.23760 (17)0.0468 (7)
H190.31660.20460.25260.056*
C200.5081 (4)0.13399 (18)0.30143 (17)0.0490 (7)
H200.47110.13260.35770.059*
C210.6567 (4)0.09341 (16)0.28126 (17)0.0453 (7)
C220.7103 (4)0.09808 (17)0.19684 (18)0.0469 (7)
H220.81280.07300.18280.056*
C230.6124 (3)0.13963 (16)0.13384 (17)0.0428 (7)
H230.64920.14100.07750.051*
C240.6961 (5)0.0322 (2)0.4205 (2)0.0767 (11)
H24A0.78260.00260.45460.115*
H24B0.58990.00220.41230.115*
H24C0.67240.08000.45020.115*
N10.4169 (3)0.23550 (12)−0.00014 (12)0.0360 (5)
O10.5968 (3)0.31891 (13)0.07875 (14)0.0597 (6)
O30.7598 (3)0.04949 (14)0.33867 (13)0.0630 (6)
U11U22U33U12U13U23
C170.070 (2)0.064 (2)0.064 (2)0.0193 (17)0.0146 (17)−0.0021 (16)
O20.0631 (13)0.0652 (14)0.0442 (11)0.0102 (11)0.0079 (10)−0.0055 (10)
C10.0374 (15)0.0421 (15)0.0515 (17)−0.0049 (12)0.0034 (12)−0.0017 (13)
C20.0556 (18)0.0518 (18)0.064 (2)−0.0179 (14)0.0117 (15)0.0049 (14)
C30.0374 (14)0.0358 (14)0.0397 (14)−0.0005 (11)0.0086 (11)−0.0041 (11)
C40.0357 (14)0.0470 (16)0.0483 (16)−0.0040 (12)0.0115 (12)0.0034 (12)
C50.0313 (14)0.0492 (17)0.0648 (19)0.0001 (12)0.0032 (13)0.0075 (14)
C60.0338 (14)0.0456 (16)0.0477 (15)−0.0032 (12)−0.0055 (11)0.0053 (12)
C70.0355 (13)0.0336 (14)0.0407 (14)0.0011 (11)0.0011 (11)0.0041 (10)
C80.0488 (16)0.0467 (17)0.0588 (18)−0.0121 (13)0.0016 (14)0.0132 (14)
C90.0506 (17)0.0371 (16)0.063 (2)−0.0080 (13)−0.0009 (14)0.0040 (13)
C100.0493 (17)0.0435 (17)0.0601 (18)−0.0119 (13)−0.0054 (14)−0.0028 (14)
C110.0377 (14)0.0348 (14)0.0378 (13)−0.0012 (11)−0.0009 (11)0.0025 (11)
C120.0440 (15)0.0485 (17)0.0401 (14)0.0068 (13)−0.0048 (12)0.0055 (12)
C130.0553 (17)0.0549 (18)0.0345 (14)0.0035 (14)−0.0017 (12)0.0024 (12)
C140.0448 (15)0.0432 (15)0.0376 (13)−0.0006 (12)0.0041 (11)−0.0011 (11)
C150.0422 (15)0.0488 (17)0.0445 (15)0.0091 (13)−0.0001 (12)0.0004 (12)
C160.0428 (15)0.0502 (16)0.0363 (13)0.0056 (13)−0.0023 (11)0.0026 (12)
C180.0382 (14)0.0371 (14)0.0374 (13)−0.0039 (11)0.0063 (11)−0.0023 (10)
C190.0407 (15)0.0607 (19)0.0400 (15)0.0036 (13)0.0100 (12)−0.0045 (13)
C200.0486 (16)0.0635 (19)0.0361 (14)0.0015 (14)0.0112 (12)0.0015 (13)
C210.0458 (15)0.0460 (16)0.0437 (15)−0.0018 (13)−0.0002 (12)0.0041 (12)
C220.0440 (15)0.0549 (18)0.0426 (15)0.0072 (13)0.0085 (12)−0.0051 (13)
C230.0441 (15)0.0490 (16)0.0359 (13)0.0041 (13)0.0080 (11)−0.0029 (12)
C240.084 (2)0.090 (3)0.056 (2)0.001 (2)−0.0027 (18)0.0272 (19)
N10.0338 (11)0.0365 (12)0.0376 (11)−0.0050 (9)0.0028 (9)0.0016 (9)
O10.0614 (14)0.0608 (14)0.0563 (13)−0.0233 (11)0.0008 (10)−0.0103 (10)
O30.0631 (14)0.0753 (16)0.0499 (12)0.0115 (12)−0.0012 (10)0.0149 (11)
C17—O21.423 (4)C9—C101.518 (4)
C17—H17A0.9600C9—H9A0.9700
C17—H17B0.9600C9—H9B0.9700
C17—H17C0.9600C10—H10A0.9700
O2—C141.374 (3)C10—H10B0.9700
C1—O11.228 (3)C11—C161.376 (4)
C1—N11.378 (3)C11—C121.396 (3)
C1—C21.509 (4)C12—C131.387 (4)
C2—H2A0.9600C12—H120.9300
C2—H2B0.9600C13—C141.387 (4)
C2—H2C0.9600C13—H130.9300
C3—N11.498 (3)C14—C151.381 (4)
C3—C181.522 (4)C15—C161.390 (4)
C3—C41.552 (3)C15—H150.9300
C3—H30.9800C16—H160.9300
C4—C51.518 (4)C18—C231.383 (4)
C4—C81.535 (4)C18—C191.387 (3)
C4—H40.9800C19—C201.382 (4)
C5—C61.531 (4)C19—H190.9300
C5—H5A0.9700C20—C211.383 (4)
C5—H5B0.9700C20—H200.9300
C6—C101.524 (4)C21—O31.367 (3)
C6—C71.549 (4)C21—C221.391 (4)
C6—H60.9800C22—C231.380 (4)
C7—N11.482 (3)C22—H220.9300
C7—C111.522 (3)C23—H230.9300
C7—H70.9800C24—O31.412 (4)
C8—C91.514 (4)C24—H24A0.9600
C8—H8A0.9700C24—H24B0.9600
C8—H8B0.9700C24—H24C0.9600
O2—C17—H17A109.5C8—C9—H9B109.5
O2—C17—H17B109.5C10—C9—H9B109.5
H17A—C17—H17B109.5H9A—C9—H9B108.1
O2—C17—H17C109.5C6—C10—C9113.0 (2)
H17A—C17—H17C109.5C6—C10—H10A109.0
H17B—C17—H17C109.5C9—C10—H10A109.0
C14—O2—C17117.2 (2)C6—C10—H10B109.0
O1—C1—N1121.4 (2)C9—C10—H10B109.0
O1—C1—C2118.5 (3)H10A—C10—H10B107.8
N1—C1—C2120.2 (2)C16—C11—C12117.3 (2)
C1—C2—H2A109.5C16—C11—C7124.3 (2)
C1—C2—H2B109.5C12—C11—C7118.3 (2)
H2A—C2—H2B109.5C13—C12—C11121.4 (2)
C1—C2—H2C109.5C13—C12—H12119.3
H2A—C2—H2C109.5C11—C12—H12119.3
H2B—C2—H2C109.5C12—C13—C14120.0 (2)
N1—C3—C18114.16 (19)C12—C13—H13120.0
N1—C3—C4114.5 (2)C14—C13—H13120.0
C18—C3—C4110.3 (2)O2—C14—C15124.7 (2)
N1—C3—H3105.7O2—C14—C13115.9 (2)
C18—C3—H3105.7C15—C14—C13119.4 (2)
C4—C3—H3105.7C14—C15—C16119.7 (2)
C5—C4—C8110.5 (2)C14—C15—H15120.2
C5—C4—C3109.2 (2)C16—C15—H15120.2
C8—C4—C3115.2 (2)C11—C16—C15122.2 (2)
C5—C4—H4107.2C11—C16—H16118.9
C8—C4—H4107.2C15—C16—H16118.9
C3—C4—H4107.2C23—C18—C19116.6 (2)
C4—C5—C6108.2 (2)C23—C18—C3124.8 (2)
C4—C5—H5A110.1C19—C18—C3118.5 (2)
C6—C5—H5A110.1C20—C19—C18122.6 (3)
C4—C5—H5B110.1C20—C19—H19118.7
C6—C5—H5B110.1C18—C19—H19118.7
H5A—C5—H5B108.4C19—C20—C21119.8 (2)
C10—C6—C5110.7 (2)C19—C20—H20120.1
C10—C6—C7115.2 (2)C21—C20—H20120.1
C5—C6—C7108.4 (2)O3—C21—C22116.3 (2)
C10—C6—H6107.4O3—C21—C20125.1 (3)
C5—C6—H6107.4C22—C21—C20118.6 (3)
C7—C6—H6107.4C23—C22—C21120.4 (3)
N1—C7—C11114.6 (2)C23—C22—H22119.8
N1—C7—C6115.1 (2)C21—C22—H22119.8
C11—C7—C6109.7 (2)C18—C23—C22121.9 (2)
N1—C7—H7105.5C18—C23—H23119.1
C11—C7—H7105.5C22—C23—H23119.1
C6—C7—H7105.5O3—C24—H24A109.5
C9—C8—C4112.2 (2)O3—C24—H24B109.5
C9—C8—H8A109.2H24A—C24—H24B109.5
C4—C8—H8A109.2O3—C24—H24C109.5
C9—C8—H8B109.2H24A—C24—H24C109.5
C4—C8—H8B109.2H24B—C24—H24C109.5
H8A—C8—H8B107.9C1—N1—C7118.1 (2)
C8—C9—C10110.6 (3)C1—N1—C3111.8 (2)
C8—C9—H9A109.5C7—N1—C3123.93 (19)
C10—C9—H9A109.5C21—O3—C24118.3 (2)
N1—C3—C4—C5−36.4 (3)C12—C11—C16—C150.9 (4)
C18—C3—C4—C5−166.8 (2)C7—C11—C16—C15177.6 (2)
N1—C3—C4—C888.6 (3)C14—C15—C16—C11−1.0 (4)
C18—C3—C4—C8−41.8 (3)N1—C3—C18—C23−17.5 (4)
C8—C4—C5—C6−60.1 (3)C4—C3—C18—C23113.1 (3)
C3—C4—C5—C667.6 (3)N1—C3—C18—C19167.0 (2)
C4—C5—C6—C1059.2 (3)C4—C3—C18—C19−62.4 (3)
C4—C5—C6—C7−68.1 (3)C23—C18—C19—C20−2.9 (4)
C10—C6—C7—N1−87.1 (3)C3—C18—C19—C20173.0 (3)
C5—C6—C7—N137.6 (3)C18—C19—C20—C211.6 (5)
C10—C6—C7—C1143.8 (3)C19—C20—C21—O3179.9 (3)
C5—C6—C7—C11168.5 (2)C19—C20—C21—C221.3 (4)
C5—C4—C8—C958.0 (3)O3—C21—C22—C23178.5 (2)
C3—C4—C8—C9−66.3 (3)C20—C21—C22—C23−2.8 (4)
C4—C8—C9—C10−52.3 (3)C19—C18—C23—C221.4 (4)
C5—C6—C10—C9−56.1 (3)C3—C18—C23—C22−174.2 (2)
C7—C6—C10—C967.4 (3)C21—C22—C23—C181.4 (4)
C8—C9—C10—C651.7 (3)O1—C1—N1—C7164.8 (2)
N1—C7—C11—C1622.7 (3)C2—C1—N1—C7−14.6 (4)
C6—C7—C11—C16−108.5 (3)O1—C1—N1—C311.4 (4)
N1—C7—C11—C12−160.7 (2)C2—C1—N1—C3−168.1 (2)
C6—C7—C11—C1268.1 (3)C11—C7—N1—C172.4 (3)
C16—C11—C12—C130.3 (4)C6—C7—N1—C1−159.1 (2)
C7—C11—C12—C13−176.5 (2)C11—C7—N1—C3−137.6 (2)
C11—C12—C13—C14−1.5 (4)C6—C7—N1—C3−9.1 (3)
C17—O2—C14—C15−5.0 (4)C18—C3—N1—C1−71.7 (3)
C17—O2—C14—C13175.2 (3)C4—C3—N1—C1159.8 (2)
C12—C13—C14—O2−178.7 (2)C18—C3—N1—C7136.7 (2)
C12—C13—C14—C151.5 (4)C4—C3—N1—C78.2 (3)
O2—C14—C15—C16179.9 (3)C22—C21—O3—C24−169.6 (3)
C13—C14—C15—C16−0.2 (4)C20—C21—O3—C2411.8 (4)
D—H···AD—HH···AD···AD—H···A
C12—H12···Cgi0.932.973.843 (3)158
Table 1

Hydrogen-bond geometry (, )

Cg is the centroid of the C18C23 ring.

DHA DHHA D A DHA
C12H12Cg i 0.932.973.843(3)158

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Nudicauline and elatine as potent norditerpenoid ligands at rat neuronal alpha-bungarotoxin binding sites: importance of the 2-(methylsuccinimido)benzoyl moiety for neuronal nicotinic acetylcholine receptor binding.

Authors:  D J Hardick; I S Blagbrough; G Cooper; B V Potter; T Critchley; S Wonnacott
Journal:  J Med Chem       Date:  1996-11-22       Impact factor: 7.446

4.  2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

5.  2,4-Bis(4-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; S Amirthaganesan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

6.  2,4-Bis(2-chloro-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Kwon Taek Lim; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

7.  Synthesis, stereochemistry and antimicrobial studies of novel oxime ethers of aza/diazabicycles.

Authors:  Paramasivam Parthiban; Gopalakrishnan Aridoss; Paramasivam Rathika; Venkatachalam Ramkumar; Senthamaraikannan Kabilan
Journal:  Bioorg Med Chem Lett       Date:  2009-10-30       Impact factor: 2.823

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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