Literature DB >> 21522389

2,4-Bis(4-but-oxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Yeon Tae Jeong.   

Abstract

In the title compound, C(28)H(37)NO(3), a crystallographic mirror plane bis-ects the mol-ecule (one half-mol-ecule in the asymmetric unit). The title compound exists in a twin-chair conformation with an equatorial orientation of the 4-but-oxy-phenyl groups. Both sides of the secondary amino group carry the 4-but-oxy-phenyl groups at an angle of 38.54 (3)° with respect to one another.

Entities:  

Year:  2011        PMID: 21522389      PMCID: PMC3051922          DOI: 10.1107/S1600536811005058

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and biological activity of 3-aza­bicyclo­[3.3.1] nonan-9-ones, see: Jeyaraman & Avila (1981 ▶); Barker et al. (2005 ▶); Parthiban et al. (2009a ▶, 2010b ▶,c ▶); Cox et al. (1985 ▶). For related structures, see: Parthiban et al. (2009b ▶,c ▶, 2010a ▶); Smith-Verdier et al. (1983 ▶); Padegimas & Kovacic (1972 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C28H37NO3 M = 435.59 Orthorhombic, a = 7.7780 (5) Å b = 31.457 (2) Å c = 9.9560 (6) Å V = 2436.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.35 × 0.28 × 0.25 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.974, T max = 0.981 10360 measured reflections 2991 independent reflections 1900 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.163 S = 1.02 2991 reflections 155 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811005058/bq2279sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811005058/bq2279Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H37NO3F(000) = 944
Mr = 435.59Dx = 1.188 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 4431 reflections
a = 7.7780 (5) Åθ = 3.3–26.9°
b = 31.457 (2) ŵ = 0.08 mm1
c = 9.9560 (6) ÅT = 298 K
V = 2436.0 (3) Å3Block, colorless
Z = 40.35 × 0.28 × 0.25 mm
Bruker APEXII CCD area-detector diffractometer2991 independent reflections
Radiation source: fine-focus sealed tube1900 reflections with I > 2σ(I)
graphiteRint = 0.025
phi and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −10→9
Tmin = 0.974, Tmax = 0.981k = −21→41
10360 measured reflectionsl = −11→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0606P)2 + 1.2024P] where P = (Fo2 + 2Fc2)/3
2991 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.1848 (3)0.71161 (6)0.10972 (19)0.0455 (5)
H11.22390.71360.20310.055*
C21.3471 (3)0.71050 (6)0.0188 (2)0.0487 (5)
H21.41650.68570.04320.058*
C31.4496 (4)0.75000.0466 (3)0.0494 (7)
C41.3130 (3)0.70937 (6)−0.1338 (2)0.0523 (5)
H4A1.42080.7044−0.18010.063*
H4B1.23720.6857−0.15360.063*
C51.2325 (4)0.7500−0.1884 (3)0.0547 (7)
H5A1.11090.7500−0.16670.066*
H5B1.24290.7500−0.28550.066*
C61.0781 (3)0.67181 (6)0.09708 (18)0.0440 (4)
C70.9491 (3)0.66660 (6)0.0020 (2)0.0542 (5)
H70.92130.6891−0.05440.065*
C80.8618 (3)0.62882 (7)−0.0105 (2)0.0560 (5)
H80.77650.6260−0.07530.067*
C90.9001 (3)0.59496 (6)0.0730 (2)0.0495 (5)
C101.0237 (3)0.59983 (6)0.1706 (2)0.0530 (5)
H101.04870.57750.22880.064*
C111.1108 (3)0.63806 (6)0.1821 (2)0.0500 (5)
H111.19360.64110.24890.060*
C120.8378 (3)0.52285 (6)0.1337 (2)0.0601 (6)
H12A0.81540.52960.22710.072*
H12B0.95670.51390.12530.072*
C130.7190 (3)0.48792 (7)0.0868 (3)0.0663 (6)
H13A0.60130.49780.09450.080*
H13B0.74130.4825−0.00750.080*
C140.7355 (4)0.44743 (7)0.1615 (3)0.0752 (7)
H14A0.70820.45230.25530.090*
H14B0.85380.43770.15660.090*
C150.6187 (4)0.41318 (8)0.1070 (3)0.0882 (9)
H15A0.50200.42310.10800.132*
H15B0.62830.38820.16180.132*
H15C0.65170.40650.01650.132*
N11.0856 (3)0.75000.0803 (2)0.0456 (5)
O11.5979 (3)0.75000.0826 (2)0.0692 (6)
O20.8061 (2)0.55880 (5)0.05158 (16)0.0662 (5)
H1N0.991 (4)0.75000.127 (3)0.052 (9)*
U11U22U33U12U13U23
C10.0549 (11)0.0463 (10)0.0354 (10)0.0017 (9)−0.0014 (8)0.0015 (8)
C20.0523 (11)0.0457 (10)0.0480 (11)0.0066 (9)−0.0010 (9)0.0022 (8)
C30.0480 (16)0.0612 (17)0.0392 (15)0.000−0.0013 (13)0.000
C40.0609 (12)0.0500 (11)0.0459 (11)−0.0011 (9)0.0079 (10)−0.0064 (9)
C50.0652 (19)0.0616 (18)0.0374 (15)0.000−0.0012 (14)0.000
C60.0516 (10)0.0444 (10)0.0360 (10)0.0038 (8)0.0046 (8)0.0018 (8)
C70.0670 (13)0.0523 (12)0.0434 (11)0.0004 (10)−0.0066 (10)0.0120 (9)
C80.0617 (12)0.0598 (13)0.0465 (12)−0.0056 (10)−0.0106 (10)0.0068 (9)
C90.0540 (11)0.0458 (10)0.0487 (12)0.0017 (9)0.0047 (9)0.0021 (9)
C100.0566 (12)0.0458 (11)0.0565 (13)0.0079 (9)−0.0016 (10)0.0125 (9)
C110.0534 (11)0.0511 (11)0.0456 (11)0.0063 (9)−0.0059 (9)0.0055 (9)
C120.0604 (13)0.0494 (12)0.0704 (15)0.0043 (10)0.0027 (12)0.0078 (10)
C130.0629 (13)0.0600 (14)0.0761 (17)−0.0033 (11)0.0005 (12)0.0103 (12)
C140.0776 (16)0.0589 (14)0.0893 (19)0.0063 (12)0.0013 (15)0.0050 (13)
C150.104 (2)0.0565 (14)0.104 (2)−0.0075 (14)0.0128 (18)−0.0072 (14)
N10.0490 (13)0.0441 (12)0.0439 (13)0.0000.0054 (11)0.000
O10.0563 (13)0.0787 (15)0.0725 (16)0.000−0.0153 (12)0.000
O20.0762 (10)0.0504 (8)0.0721 (11)−0.0099 (8)−0.0117 (9)0.0099 (7)
C1—N11.463 (2)C9—O21.369 (2)
C1—C61.507 (3)C9—C101.376 (3)
C1—C21.554 (3)C10—C111.385 (3)
C1—H10.9800C10—H100.9300
C2—C31.502 (2)C11—H110.9300
C2—C41.543 (3)C12—O21.417 (2)
C2—H20.9800C12—C131.510 (3)
C3—O11.208 (3)C12—H12A0.9700
C3—C2i1.502 (2)C12—H12B0.9700
C4—C51.523 (3)C13—C141.481 (3)
C4—H4A0.9700C13—H13A0.9700
C4—H4B0.9700C13—H13B0.9700
C5—C4i1.523 (3)C14—C151.510 (4)
C5—H5A0.9700C14—H14A0.9700
C5—H5B0.9700C14—H14B0.9700
C6—C111.382 (3)C15—H15A0.9600
C6—C71.390 (3)C15—H15B0.9600
C7—C81.374 (3)C15—H15C0.9600
C7—H70.9300N1—C1i1.463 (2)
C8—C91.384 (3)N1—H1N0.87 (3)
C8—H80.9300
N1—C1—C6112.25 (17)O2—C9—C8115.55 (18)
N1—C1—C2109.31 (16)C10—C9—C8119.29 (19)
C6—C1—C2112.33 (15)C9—C10—C11119.77 (18)
N1—C1—H1107.6C9—C10—H10120.1
C6—C1—H1107.6C11—C10—H10120.1
C2—C1—H1107.6C6—C11—C10121.80 (19)
C3—C2—C4106.96 (18)C6—C11—H11119.1
C3—C2—C1107.76 (17)C10—C11—H11119.1
C4—C2—C1115.76 (17)O2—C12—C13107.21 (19)
C3—C2—H2108.7O2—C12—H12A110.3
C4—C2—H2108.7C13—C12—H12A110.3
C1—C2—H2108.7O2—C12—H12B110.3
O1—C3—C2124.15 (12)C13—C12—H12B110.3
O1—C3—C2i124.15 (12)H12A—C12—H12B108.5
C2—C3—C2i111.7 (2)C14—C13—C12114.7 (2)
C5—C4—C2113.74 (17)C14—C13—H13A108.6
C5—C4—H4A108.8C12—C13—H13A108.6
C2—C4—H4A108.8C14—C13—H13B108.6
C5—C4—H4B108.8C12—C13—H13B108.6
C2—C4—H4B108.8H13A—C13—H13B107.6
H4A—C4—H4B107.7C13—C14—C15112.4 (2)
C4—C5—C4i114.1 (2)C13—C14—H14A109.1
C4—C5—H5A108.7C15—C14—H14A109.1
C4i—C5—H5A108.7C13—C14—H14B109.1
C4—C5—H5B108.7C15—C14—H14B109.1
C4i—C5—H5B108.7H14A—C14—H14B107.9
H5A—C5—H5B107.6C14—C15—H15A109.5
C11—C6—C7117.37 (18)C14—C15—H15B109.5
C11—C6—C1119.07 (18)H15A—C15—H15B109.5
C7—C6—C1123.54 (17)C14—C15—H15C109.5
C8—C7—C6121.36 (18)H15A—C15—H15C109.5
C8—C7—H7119.3H15B—C15—H15C109.5
C6—C7—H7119.3C1—N1—C1i111.3 (2)
C7—C8—C9120.3 (2)C1—N1—H1N109.8 (9)
C7—C8—H8119.8C1i—N1—H1N109.8 (9)
C9—C8—H8119.8C9—O2—C12118.72 (17)
O2—C9—C10125.15 (18)
N1—C1—C2—C358.7 (2)C1—C6—C7—C8176.3 (2)
C6—C1—C2—C3−176.04 (17)C6—C7—C8—C90.5 (3)
N1—C1—C2—C4−61.0 (2)C7—C8—C9—O2−179.7 (2)
C6—C1—C2—C464.3 (2)C7—C8—C9—C101.5 (3)
C4—C2—C3—O1−111.7 (3)O2—C9—C10—C11179.82 (19)
C1—C2—C3—O1123.2 (3)C8—C9—C10—C11−1.6 (3)
C4—C2—C3—C2i66.0 (3)C7—C6—C11—C102.4 (3)
C1—C2—C3—C2i−59.1 (3)C1—C6—C11—C10−176.39 (18)
C3—C2—C4—C5−52.9 (2)C9—C10—C11—C6−0.4 (3)
C1—C2—C4—C567.2 (2)O2—C12—C13—C14179.6 (2)
C2—C4—C5—C4i43.6 (3)C12—C13—C14—C15−177.8 (2)
N1—C1—C6—C11−145.94 (19)C6—C1—N1—C1i172.73 (12)
C2—C1—C6—C1190.4 (2)C2—C1—N1—C1i−61.9 (2)
N1—C1—C6—C735.4 (3)C10—C9—O2—C12−1.0 (3)
C2—C1—C6—C7−88.3 (2)C8—C9—O2—C12−179.72 (19)
C11—C6—C7—C8−2.4 (3)C13—C12—O2—C9−179.18 (19)
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2.  Methyllycaconitine analogues have mixed antagonist effects at nicotinic acetylcholine receptors.

Authors:  David Barker; Diana H-S Lin; Jane E Carland; Cindy P-Y Chu; Mary Chebib; Margaret A Brimble; G Paul Savage; Malcolm D McLeod
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3.  Stereospecific synthesis of oximes and oxime ethers of 3-azabicycles: A SAR study towards antimicrobial agents.

Authors:  Paramasivam Parthiban; Paramasivam Rathika; Venkatachalam Ramkumar; Se Mo Son; Yeon Tae Jeong
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4.  2,4-Bis(2-methoxy-phenyl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23

5.  2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

6.  2,4-Bis(4-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; S Amirthaganesan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

7.  Synthesis, stereochemistry and antimicrobial studies of novel oxime ethers of aza/diazabicycles.

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