Literature DB >> 21754081

2,4-Bis(4-propoxyphen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

P Parthiban, V Ramkumar, Yeon Tae Jeong.   

Abstract

In the title compound, C(26)H(33)NO(3), a crystallographic mirror plane bis-ects the mol-ecule (two C atoms, one O atom and one N atom lie on the mirror plane). The mol-ecule exists in a twin-chair conformation with equatorial orientations of the 4-propoxyphenyl groups. The dihedral angle between the 4-propoxyphenyl groups is 31.58 (3)°.

Entities:  

Year:  2011        PMID: 21754081      PMCID: PMC3099911          DOI: 10.1107/S1600536811007483

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 3-aza­bicyclo­nona­nes, see: Jeyaraman & Avila (1981 ▶); Barker et al. (2005 ▶); Parthiban et al. (2009a ▶, 2010b ▶,c ▶). For related stuctures, see: Parthiban et al. (2009b ▶,c ▶, 2010a ▶); Smith-Verdier et al. (1983 ▶); Padegimas & Kovacic (1972 ▶). For ring puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C26H33NO3 M = 407.53 Orthorhombic, a = 7.3846 (4) Å b = 29.3963 (19) Å c = 10.2739 (7) Å V = 2230.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 K 0.25 × 0.22 × 0.20 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.981, T max = 0.985 7260 measured reflections 1860 independent reflections 1121 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.104 S = 1.00 1860 reflections 146 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811007483/hb5803sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811007483/hb5803Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H33NO3F(000) = 880
Mr = 407.53Dx = 1.214 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 1042 reflections
a = 7.3846 (4) Åθ = 2.3–20.8°
b = 29.3963 (19) ŵ = 0.08 mm1
c = 10.2739 (7) ÅT = 298 K
V = 2230.3 (2) Å3Block, colourless
Z = 40.25 × 0.22 × 0.20 mm
Bruker APEXII CCD diffractometer1860 independent reflections
Radiation source: fine-focus sealed tube1121 reflections with I > 2σ(I)
graphiteRint = 0.047
φ and ω scansθmax = 26.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −8→8
Tmin = 0.981, Tmax = 0.985k = −31→32
7260 measured reflectionsl = −12→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0404P)2 + 0.4368P] where P = (Fo2 + 2Fc2)/3
1860 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6512 (3)0.29134 (6)0.6070 (2)0.0384 (5)
H10.69340.28930.69720.046*
C20.8207 (3)0.29225 (7)0.5180 (2)0.0426 (6)
H20.89440.31880.54080.051*
C30.7815 (3)0.29351 (7)0.3708 (2)0.0474 (6)
H3A0.70040.31870.35290.057*
H3B0.89400.29930.32490.057*
C40.6973 (4)0.25000.3174 (3)0.0482 (8)
H4A0.70930.25000.22340.058*
H4B0.56910.25000.33770.058*
C50.9286 (4)0.25000.5451 (3)0.0437 (8)
C60.5396 (3)0.33407 (7)0.5949 (2)0.0364 (5)
C70.3900 (3)0.33809 (7)0.5140 (2)0.0418 (6)
H70.35060.31300.46660.050*
C80.2990 (3)0.37892 (7)0.5032 (2)0.0426 (6)
H80.19880.38110.44880.051*
C90.3553 (3)0.41666 (7)0.5724 (2)0.0389 (6)
C100.5009 (3)0.41290 (7)0.6550 (2)0.0480 (6)
H100.53840.43780.70400.058*
C110.5911 (3)0.37188 (7)0.6647 (2)0.0462 (6)
H110.69010.36970.72040.055*
C120.3046 (3)0.49521 (7)0.6265 (2)0.0484 (6)
H12A0.42840.50390.60700.058*
H12B0.29590.48890.71900.058*
C130.1778 (3)0.53290 (7)0.5904 (2)0.0578 (7)
H13A0.05450.52370.60960.069*
H13B0.18630.53860.49760.069*
C140.2201 (4)0.57630 (8)0.6634 (3)0.0768 (9)
H14A0.21160.57080.75540.115*
H14B0.13500.59950.63900.115*
H14C0.34050.58610.64230.115*
N10.5477 (4)0.25000.5790 (3)0.0405 (7)
O11.0831 (3)0.25000.5851 (2)0.0633 (7)
O20.25630 (19)0.45579 (5)0.55359 (16)0.0531 (5)
H1N0.458 (4)0.25000.623 (3)0.029 (9)*
U11U22U33U12U13U23
C10.0415 (12)0.0358 (12)0.0380 (13)−0.0030 (10)−0.0027 (10)−0.0016 (10)
C20.0377 (13)0.0352 (12)0.0548 (16)−0.0049 (10)0.0003 (11)−0.0056 (11)
C30.0497 (14)0.0433 (13)0.0492 (15)0.0036 (11)0.0091 (12)0.0038 (12)
C40.055 (2)0.049 (2)0.0407 (19)0.0000.0047 (16)0.000
C50.0354 (19)0.049 (2)0.047 (2)0.0000.0018 (16)0.000
C60.0379 (12)0.0346 (12)0.0368 (13)−0.0022 (10)0.0005 (10)−0.0019 (10)
C70.0445 (13)0.0362 (13)0.0445 (14)−0.0045 (11)−0.0023 (11)−0.0051 (11)
C80.0439 (13)0.0424 (14)0.0415 (14)−0.0020 (11)−0.0081 (11)−0.0027 (11)
C90.0413 (13)0.0318 (13)0.0436 (14)−0.0017 (10)0.0042 (11)0.0011 (10)
C100.0508 (15)0.0388 (14)0.0543 (16)−0.0033 (11)−0.0069 (13)−0.0129 (12)
C110.0435 (14)0.0436 (14)0.0515 (15)0.0004 (11)−0.0117 (12)−0.0081 (12)
C120.0519 (14)0.0357 (13)0.0575 (15)−0.0046 (11)0.0027 (12)−0.0054 (12)
C130.0594 (15)0.0400 (14)0.0740 (18)0.0013 (12)0.0019 (14)−0.0047 (13)
C140.0743 (19)0.0471 (15)0.109 (3)0.0032 (14)−0.0007 (17)−0.0183 (16)
N10.0371 (16)0.0360 (16)0.0483 (18)0.0000.0066 (15)0.000
O10.0369 (14)0.0686 (16)0.0845 (18)0.000−0.0115 (13)0.000
O20.0604 (10)0.0345 (9)0.0644 (11)0.0053 (7)−0.0124 (8)−0.0074 (8)
C1—N11.464 (2)C8—C91.381 (3)
C1—C61.507 (3)C8—H80.9300
C1—C21.551 (3)C9—C101.375 (3)
C1—H10.9800C9—O21.376 (2)
C2—C51.502 (3)C10—C111.381 (3)
C2—C31.540 (3)C10—H100.9300
C2—H20.9800C11—H110.9300
C3—C41.524 (3)C12—O21.425 (2)
C3—H3A0.9700C12—C131.497 (3)
C3—H3B0.9700C12—H12A0.9700
C4—C3i1.524 (3)C12—H12B0.9700
C4—H4A0.9700C13—C141.512 (3)
C4—H4B0.9700C13—H13A0.9700
C5—O11.213 (3)C13—H13B0.9700
C5—C2i1.502 (3)C14—H14A0.9600
C6—C111.377 (3)C14—H14B0.9600
C6—C71.387 (3)C14—H14C0.9600
C7—C81.380 (3)N1—C1i1.464 (2)
C7—H70.9300N1—H1N0.80 (3)
N1—C1—C6112.97 (17)C7—C8—H8119.6
N1—C1—C2108.69 (19)C9—C8—H8119.6
C6—C1—C2112.25 (17)C10—C9—O2124.69 (19)
N1—C1—H1107.6C10—C9—C8119.24 (19)
C6—C1—H1107.6O2—C9—C8116.06 (19)
C2—C1—H1107.6C9—C10—C11119.5 (2)
C5—C2—C3107.6 (2)C9—C10—H10120.3
C5—C2—C1107.73 (19)C11—C10—H10120.3
C3—C2—C1115.30 (17)C6—C11—C10122.3 (2)
C5—C2—H2108.7C6—C11—H11118.9
C3—C2—H2108.7C10—C11—H11118.9
C1—C2—H2108.7O2—C12—C13108.35 (18)
C4—C3—C2114.2 (2)O2—C12—H12A110.0
C4—C3—H3A108.7C13—C12—H12A110.0
C2—C3—H3A108.7O2—C12—H12B110.0
C4—C3—H3B108.7C13—C12—H12B110.0
C2—C3—H3B108.7H12A—C12—H12B108.4
H3A—C3—H3B107.6C12—C13—C14111.9 (2)
C3—C4—C3i114.1 (3)C12—C13—H13A109.2
C3—C4—H4A108.7C14—C13—H13A109.2
C3i—C4—H4A108.7C12—C13—H13B109.2
C3—C4—H4B108.7C14—C13—H13B109.2
C3i—C4—H4B108.7H13A—C13—H13B107.9
H4A—C4—H4B107.6C13—C14—H14A109.5
O1—C5—C2i124.19 (13)C13—C14—H14B109.5
O1—C5—C2124.19 (13)H14A—C14—H14B109.5
C2i—C5—C2111.6 (3)C13—C14—H14C109.5
C11—C6—C7117.62 (19)H14A—C14—H14C109.5
C11—C6—C1118.61 (18)H14B—C14—H14C109.5
C7—C6—C1123.75 (19)C1—N1—C1i112.2 (2)
C8—C7—C6120.7 (2)C1—N1—H1N108.6 (10)
C8—C7—H7119.7C1i—N1—H1N108.6 (10)
C6—C7—H7119.7C9—O2—C12118.21 (16)
C7—C8—C9120.7 (2)
N1—C1—C2—C5−58.5 (2)C1—C6—C7—C8−177.0 (2)
C6—C1—C2—C5175.77 (19)C6—C7—C8—C90.2 (3)
N1—C1—C2—C361.6 (2)C7—C8—C9—C10−1.6 (3)
C6—C1—C2—C3−64.1 (2)C7—C8—C9—O2179.35 (19)
C5—C2—C3—C452.0 (3)O2—C9—C10—C11−179.3 (2)
C1—C2—C3—C4−68.2 (3)C8—C9—C10—C111.7 (3)
C2—C3—C4—C3i−42.1 (3)C7—C6—C11—C10−0.9 (3)
C3—C2—C5—O1115.5 (3)C1—C6—C11—C10177.2 (2)
C1—C2—C5—O1−119.6 (3)C9—C10—C11—C6−0.5 (3)
C3—C2—C5—C2i−65.1 (3)O2—C12—C13—C14−179.8 (2)
C1—C2—C5—C2i59.8 (3)C6—C1—N1—C1i−172.82 (15)
N1—C1—C6—C11154.5 (2)C2—C1—N1—C1i61.9 (3)
C2—C1—C6—C11−82.1 (2)C10—C9—O2—C12−1.4 (3)
N1—C1—C6—C7−27.5 (3)C8—C9—O2—C12177.64 (18)
C2—C1—C6—C795.8 (2)C13—C12—O2—C9−179.52 (18)
C11—C6—C7—C81.0 (3)
  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyllycaconitine analogues have mixed antagonist effects at nicotinic acetylcholine receptors.

Authors:  David Barker; Diana H-S Lin; Jane E Carland; Cindy P-Y Chu; Mary Chebib; Margaret A Brimble; G Paul Savage; Malcolm D McLeod
Journal:  Bioorg Med Chem       Date:  2005-07-15       Impact factor: 3.641

3.  Stereospecific synthesis of oximes and oxime ethers of 3-azabicycles: A SAR study towards antimicrobial agents.

Authors:  Paramasivam Parthiban; Paramasivam Rathika; Venkatachalam Ramkumar; Se Mo Son; Yeon Tae Jeong
Journal:  Bioorg Med Chem Lett       Date:  2010-01-20       Impact factor: 2.823

4.  2,4-Bis(2-methoxy-phenyl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Min Sung Kim; Se Mo Son; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-23

5.  2,4-Bis(3-methoxy-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-04

6.  2,4-Bis(4-bromo-phen-yl)-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  P Parthiban; V Ramkumar; S Amirthaganesan; Yeon Tae Jeong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-20

7.  Synthesis, stereochemistry and antimicrobial studies of novel oxime ethers of aza/diazabicycles.

Authors:  Paramasivam Parthiban; Gopalakrishnan Aridoss; Paramasivam Rathika; Venkatachalam Ramkumar; Senthamaraikannan Kabilan
Journal:  Bioorg Med Chem Lett       Date:  2009-10-30       Impact factor: 2.823

  7 in total
  1 in total

1.  2,4-Bis(4-eth-oxy-phen-yl)-1-methyl-3-aza-bicyclo-[3.3.1]nonan-9-one.

Authors:  Dong Ho Park; V Ramkumar; P Parthiban
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-26
  1 in total

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