| Literature DB >> 21582889 |
Hoong-Kun Fun, Chin Sing Yeap, Mahesh Padaki, Shridhar Malladi, Arun M Isloor.
Abstract
In the title compound, C(9)H(10)FN(3)O, the semicarbazone group is nearly planar, with the maximum deviation of 0.044 (1) Å for one of the N atoms. The mean plane of semicarbazone group forms a dihedral angle of 30.94 (4)° with the benzene ring. The mol-ecules are linked into a supra-molecular chain by N-H⋯O hydrogen bonds formed along the c axis. The crystal structure is further stabilized by weak inter-molucular C-H⋯π inter-actions; the closest C⋯Cg contact is 3.6505 (11) Å.Entities:
Year: 2009 PMID: 21582889 PMCID: PMC2969237 DOI: 10.1107/S1600536809022521
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H10FN3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5018 reflections |
| θ = 4.2–38.8° | |
| µ = 0.11 mm−1 | |
| β = 95.887 (1)° | Needle, colourless |
| 0.30 × 0.10 × 0.08 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3998 independent reflections |
| Radiation source: fine-focus sealed tube | 2766 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.0°, θmin = 1.1° |
| Absorption correction: multi-scan ( | |
| 17523 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3998 reflections | (Δ/σ)max < 0.001 |
| 167 parameters | Δρmax = 0.51 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| F1 | 0.50077 (4) | 0.48694 (11) | 0.79001 (10) | 0.02274 (17) | |
| O1 | −0.01336 (4) | 0.50372 (12) | 0.73484 (10) | 0.01547 (16) | |
| N1 | 0.16753 (5) | 0.50702 (12) | 0.66798 (11) | 0.01257 (16) | |
| N2 | 0.09495 (5) | 0.50670 (13) | 0.62389 (11) | 0.01339 (17) | |
| N3 | 0.08724 (5) | 0.50728 (15) | 0.93755 (12) | 0.01734 (19) | |
| C1 | 0.31185 (5) | 0.59520 (16) | 0.76477 (14) | 0.01595 (19) | |
| C2 | 0.38374 (6) | 0.59368 (17) | 0.82935 (14) | 0.0178 (2) | |
| C3 | 0.43028 (5) | 0.49203 (16) | 0.72738 (15) | 0.01591 (19) | |
| C4 | 0.40812 (6) | 0.39453 (17) | 0.56461 (14) | 0.0177 (2) | |
| C5 | 0.33579 (5) | 0.39948 (17) | 0.50051 (13) | 0.01569 (19) | |
| C6 | 0.28652 (5) | 0.49812 (14) | 0.60026 (13) | 0.01153 (17) | |
| C7 | 0.20888 (5) | 0.49673 (14) | 0.53803 (13) | 0.01158 (17) | |
| C8 | 0.05269 (5) | 0.50588 (15) | 0.76711 (13) | 0.01249 (18) | |
| C9 | 0.18228 (6) | 0.48336 (16) | 0.33718 (13) | 0.01471 (19) | |
| H1A | 0.2783 (8) | 0.667 (2) | 0.8362 (19) | 0.023 (4)* | |
| H2A | 0.4017 (8) | 0.666 (3) | 0.943 (2) | 0.031 (4)* | |
| H4A | 0.4422 (7) | 0.324 (2) | 0.4966 (19) | 0.021 (3)* | |
| H5A | 0.3214 (7) | 0.328 (2) | 0.3860 (19) | 0.017 (3)* | |
| H9A | 0.1565 (9) | 0.602 (3) | 0.303 (2) | 0.035 (4)* | |
| H9B | 0.1536 (9) | 0.364 (3) | 0.317 (2) | 0.037 (5)* | |
| H9C | 0.2216 (10) | 0.480 (2) | 0.254 (2) | 0.031 (5)* | |
| H1N2 | 0.0681 (10) | 0.502 (2) | 0.505 (3) | 0.029 (4)* | |
| H1N3 | 0.1329 (10) | 0.506 (2) | 0.947 (2) | 0.025 (4)* | |
| H2N3 | 0.0643 (10) | 0.505 (2) | 1.027 (3) | 0.030 (5)* |
| F1 | 0.0096 (3) | 0.0346 (4) | 0.0230 (3) | 0.0012 (2) | −0.0031 (2) | −0.0014 (3) |
| O1 | 0.0103 (3) | 0.0256 (4) | 0.0103 (3) | −0.0002 (3) | 0.0004 (2) | −0.0005 (3) |
| N1 | 0.0098 (3) | 0.0167 (4) | 0.0110 (3) | 0.0002 (3) | 0.0002 (3) | 0.0005 (3) |
| N2 | 0.0101 (3) | 0.0220 (4) | 0.0080 (3) | −0.0003 (3) | 0.0004 (3) | 0.0000 (3) |
| N3 | 0.0120 (4) | 0.0317 (5) | 0.0082 (3) | −0.0002 (3) | 0.0003 (3) | −0.0006 (3) |
| C1 | 0.0137 (4) | 0.0188 (5) | 0.0150 (4) | 0.0013 (4) | −0.0002 (3) | −0.0034 (3) |
| C2 | 0.0152 (4) | 0.0214 (5) | 0.0161 (4) | 0.0001 (4) | −0.0022 (3) | −0.0036 (4) |
| C3 | 0.0097 (4) | 0.0205 (5) | 0.0169 (4) | 0.0002 (3) | −0.0017 (3) | 0.0026 (3) |
| C4 | 0.0131 (4) | 0.0230 (5) | 0.0173 (4) | 0.0029 (4) | 0.0021 (3) | −0.0016 (4) |
| C5 | 0.0134 (4) | 0.0202 (5) | 0.0133 (4) | 0.0012 (3) | 0.0006 (3) | −0.0024 (3) |
| C6 | 0.0107 (4) | 0.0134 (4) | 0.0103 (4) | 0.0005 (3) | 0.0002 (3) | 0.0007 (3) |
| C7 | 0.0116 (4) | 0.0128 (4) | 0.0102 (4) | 0.0005 (3) | 0.0003 (3) | −0.0006 (3) |
| C8 | 0.0114 (4) | 0.0167 (4) | 0.0094 (4) | 0.0000 (3) | 0.0009 (3) | −0.0005 (3) |
| C9 | 0.0122 (4) | 0.0211 (5) | 0.0105 (4) | −0.0010 (4) | −0.0003 (3) | −0.0006 (3) |
| F1—C3 | 1.3587 (12) | C2—C3 | 1.3826 (15) |
| O1—C8 | 1.2413 (12) | C2—H2A | 0.989 (17) |
| N1—C7 | 1.2900 (13) | C3—C4 | 1.3805 (15) |
| N1—N2 | 1.3709 (12) | C4—C5 | 1.3939 (14) |
| N2—C8 | 1.3779 (13) | C4—H4A | 0.971 (14) |
| N2—H1N2 | 0.957 (19) | C5—C6 | 1.3995 (14) |
| N3—C8 | 1.3446 (13) | C5—H5A | 0.976 (14) |
| N3—H1N3 | 0.856 (18) | C6—C7 | 1.4851 (13) |
| N3—H2N3 | 0.820 (19) | C7—C9 | 1.5040 (13) |
| C1—C2 | 1.3866 (14) | C9—H9A | 0.945 (19) |
| C1—C6 | 1.4037 (14) | C9—H9B | 0.964 (18) |
| C1—H1A | 0.983 (14) | C9—H9C | 1.005 (18) |
| C7—N1—N2 | 119.27 (8) | C4—C5—C6 | 120.83 (9) |
| N1—N2—C8 | 117.41 (8) | C4—C5—H5A | 116.8 (8) |
| N1—N2—H1N2 | 129.3 (10) | C6—C5—H5A | 122.3 (8) |
| C8—N2—H1N2 | 113.3 (10) | C5—C6—C1 | 118.42 (9) |
| C8—N3—H1N3 | 117.6 (12) | C5—C6—C7 | 121.42 (8) |
| C8—N3—H2N3 | 119.6 (13) | C1—C6—C7 | 120.14 (8) |
| H1N3—N3—H2N3 | 122.7 (18) | N1—C7—C6 | 115.04 (8) |
| C2—C1—C6 | 121.47 (9) | N1—C7—C9 | 123.77 (9) |
| C2—C1—H1A | 118.7 (8) | C6—C7—C9 | 121.19 (8) |
| C6—C1—H1A | 119.8 (8) | O1—C8—N3 | 123.76 (9) |
| C3—C2—C1 | 118.04 (9) | O1—C8—N2 | 120.04 (9) |
| C3—C2—H2A | 120.6 (9) | N3—C8—N2 | 116.20 (9) |
| C1—C2—H2A | 121.4 (9) | C7—C9—H9A | 108.5 (11) |
| F1—C3—C4 | 118.48 (9) | C7—C9—H9B | 108.7 (10) |
| F1—C3—C2 | 118.77 (9) | H9A—C9—H9B | 112.6 (16) |
| C4—C3—C2 | 122.75 (10) | C7—C9—H9C | 113.6 (11) |
| C3—C4—C5 | 118.48 (10) | H9A—C9—H9C | 104.5 (14) |
| C3—C4—H4A | 120.7 (8) | H9B—C9—H9C | 109.0 (14) |
| C5—C4—H4A | 120.8 (8) | ||
| C7—N1—N2—C8 | 176.26 (9) | C2—C1—C6—C7 | 177.96 (9) |
| C6—C1—C2—C3 | −0.43 (16) | N2—N1—C7—C6 | 179.99 (8) |
| C1—C2—C3—F1 | −179.17 (10) | N2—N1—C7—C9 | −0.23 (14) |
| C1—C2—C3—C4 | 0.56 (17) | C5—C6—C7—N1 | 150.01 (10) |
| F1—C3—C4—C5 | 179.90 (9) | C1—C6—C7—N1 | −28.31 (13) |
| C2—C3—C4—C5 | 0.17 (17) | C5—C6—C7—C9 | −29.77 (14) |
| C3—C4—C5—C6 | −1.05 (16) | C1—C6—C7—C9 | 151.91 (10) |
| C4—C5—C6—C1 | 1.16 (15) | N1—N2—C8—O1 | −179.35 (9) |
| C4—C5—C6—C7 | −177.18 (9) | N1—N2—C8—N3 | 0.57 (13) |
| C2—C1—C6—C5 | −0.41 (15) |
| H··· | ||||
| N2—H1N2···O1i | 0.96 (2) | 1.94 (2) | 2.8998 (11) | 179.2 (18) |
| N3—H2N3···O1ii | 0.82 (2) | 2.07 (2) | 2.8901 (12) | 176 (2) |
| C2—H2A···Cg1iii | 0.989 (17) | 2.927 (18) | 3.7250 (12) | 138.5 (12) |
| C5—H5A···Cg1iv | 0.976 (14) | 2.825 (13) | 3.6505 (11) | 142.8 (10) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.96 (2) | 1.94 (2) | 2.8998 (11) | 179.2 (18) |
| N3—H2 | 0.82 (2) | 2.07 (2) | 2.8901 (12) | 176 (2) |
| C2—H2 | 0.989 (17) | 2.927 (18) | 3.7250 (12) | 138.5 (12) |
| C5—H5 | 0.976 (14) | 2.825 (13) | 3.6505 (11) | 142.8 (10) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of C1–C6 benzene ring.