Literature DB >> 21582889

(E)-1-(4-Fluoro-phen-yl)ethan-1-one semicarbazone.

Hoong-Kun Fun, Chin Sing Yeap, Mahesh Padaki, Shridhar Malladi, Arun M Isloor.   

Abstract

In the title compound, C(9)H(10)FN(3)O, the semicarbazone group is nearly planar, with the maximum deviation of 0.044 (1) Å for one of the N atoms. The mean plane of semicarbazone group forms a dihedral angle of 30.94 (4)° with the benzene ring. The mol-ecules are linked into a supra-molecular chain by N-H⋯O hydrogen bonds formed along the c axis. The crystal structure is further stabilized by weak inter-molucular C-H⋯π inter-actions; the closest C⋯Cg contact is 3.6505 (11) Å.

Entities:  

Year:  2009        PMID: 21582889      PMCID: PMC2969237          DOI: 10.1107/S1600536809022521

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For applications of semicarbazone derivatives, see: Chandra & Gupta (2005 ▶); Jain et al. (2002 ▶); Pilgram (1978 ▶); Warren et al. (1977 ▶); Yogeeswari et al. (2004 ▶). For the preparation of the compound, see: Furniss et al. (1978 ▶). For related structures, see: Fun et al. (2009a ▶,b ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C9H10FN3O M = 195.20 Monoclinic, a = 18.8207 (3) Å b = 6.6387 (1) Å c = 7.3074 (1) Å β = 95.887 (1)° V = 908.21 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.30 × 0.10 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.876, T max = 0.991 17523 measured reflections 3998 independent reflections 2766 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.151 S = 1.07 3998 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.51 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809022521/tk2477sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022521/tk2477Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10FN3OF(000) = 408
Mr = 195.20Dx = 1.428 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5018 reflections
a = 18.8207 (3) Åθ = 4.2–38.8°
b = 6.6387 (1) ŵ = 0.11 mm1
c = 7.3074 (1) ÅT = 100 K
β = 95.887 (1)°Needle, colourless
V = 908.21 (2) Å30.30 × 0.10 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3998 independent reflections
Radiation source: fine-focus sealed tube2766 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 35.0°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −29→30
Tmin = 0.876, Tmax = 0.991k = −10→10
17523 measured reflectionsl = −7→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.078P)2 + 0.1557P] where P = (Fo2 + 2Fc2)/3
3998 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.50077 (4)0.48694 (11)0.79001 (10)0.02274 (17)
O1−0.01336 (4)0.50372 (12)0.73484 (10)0.01547 (16)
N10.16753 (5)0.50702 (12)0.66798 (11)0.01257 (16)
N20.09495 (5)0.50670 (13)0.62389 (11)0.01339 (17)
N30.08724 (5)0.50728 (15)0.93755 (12)0.01734 (19)
C10.31185 (5)0.59520 (16)0.76477 (14)0.01595 (19)
C20.38374 (6)0.59368 (17)0.82935 (14)0.0178 (2)
C30.43028 (5)0.49203 (16)0.72738 (15)0.01591 (19)
C40.40812 (6)0.39453 (17)0.56461 (14)0.0177 (2)
C50.33579 (5)0.39948 (17)0.50051 (13)0.01569 (19)
C60.28652 (5)0.49812 (14)0.60026 (13)0.01153 (17)
C70.20888 (5)0.49673 (14)0.53803 (13)0.01158 (17)
C80.05269 (5)0.50588 (15)0.76711 (13)0.01249 (18)
C90.18228 (6)0.48336 (16)0.33718 (13)0.01471 (19)
H1A0.2783 (8)0.667 (2)0.8362 (19)0.023 (4)*
H2A0.4017 (8)0.666 (3)0.943 (2)0.031 (4)*
H4A0.4422 (7)0.324 (2)0.4966 (19)0.021 (3)*
H5A0.3214 (7)0.328 (2)0.3860 (19)0.017 (3)*
H9A0.1565 (9)0.602 (3)0.303 (2)0.035 (4)*
H9B0.1536 (9)0.364 (3)0.317 (2)0.037 (5)*
H9C0.2216 (10)0.480 (2)0.254 (2)0.031 (5)*
H1N20.0681 (10)0.502 (2)0.505 (3)0.029 (4)*
H1N30.1329 (10)0.506 (2)0.947 (2)0.025 (4)*
H2N30.0643 (10)0.505 (2)1.027 (3)0.030 (5)*
U11U22U33U12U13U23
F10.0096 (3)0.0346 (4)0.0230 (3)0.0012 (2)−0.0031 (2)−0.0014 (3)
O10.0103 (3)0.0256 (4)0.0103 (3)−0.0002 (3)0.0004 (2)−0.0005 (3)
N10.0098 (3)0.0167 (4)0.0110 (3)0.0002 (3)0.0002 (3)0.0005 (3)
N20.0101 (3)0.0220 (4)0.0080 (3)−0.0003 (3)0.0004 (3)0.0000 (3)
N30.0120 (4)0.0317 (5)0.0082 (3)−0.0002 (3)0.0003 (3)−0.0006 (3)
C10.0137 (4)0.0188 (5)0.0150 (4)0.0013 (4)−0.0002 (3)−0.0034 (3)
C20.0152 (4)0.0214 (5)0.0161 (4)0.0001 (4)−0.0022 (3)−0.0036 (4)
C30.0097 (4)0.0205 (5)0.0169 (4)0.0002 (3)−0.0017 (3)0.0026 (3)
C40.0131 (4)0.0230 (5)0.0173 (4)0.0029 (4)0.0021 (3)−0.0016 (4)
C50.0134 (4)0.0202 (5)0.0133 (4)0.0012 (3)0.0006 (3)−0.0024 (3)
C60.0107 (4)0.0134 (4)0.0103 (4)0.0005 (3)0.0002 (3)0.0007 (3)
C70.0116 (4)0.0128 (4)0.0102 (4)0.0005 (3)0.0003 (3)−0.0006 (3)
C80.0114 (4)0.0167 (4)0.0094 (4)0.0000 (3)0.0009 (3)−0.0005 (3)
C90.0122 (4)0.0211 (5)0.0105 (4)−0.0010 (4)−0.0003 (3)−0.0006 (3)
F1—C31.3587 (12)C2—C31.3826 (15)
O1—C81.2413 (12)C2—H2A0.989 (17)
N1—C71.2900 (13)C3—C41.3805 (15)
N1—N21.3709 (12)C4—C51.3939 (14)
N2—C81.3779 (13)C4—H4A0.971 (14)
N2—H1N20.957 (19)C5—C61.3995 (14)
N3—C81.3446 (13)C5—H5A0.976 (14)
N3—H1N30.856 (18)C6—C71.4851 (13)
N3—H2N30.820 (19)C7—C91.5040 (13)
C1—C21.3866 (14)C9—H9A0.945 (19)
C1—C61.4037 (14)C9—H9B0.964 (18)
C1—H1A0.983 (14)C9—H9C1.005 (18)
C7—N1—N2119.27 (8)C4—C5—C6120.83 (9)
N1—N2—C8117.41 (8)C4—C5—H5A116.8 (8)
N1—N2—H1N2129.3 (10)C6—C5—H5A122.3 (8)
C8—N2—H1N2113.3 (10)C5—C6—C1118.42 (9)
C8—N3—H1N3117.6 (12)C5—C6—C7121.42 (8)
C8—N3—H2N3119.6 (13)C1—C6—C7120.14 (8)
H1N3—N3—H2N3122.7 (18)N1—C7—C6115.04 (8)
C2—C1—C6121.47 (9)N1—C7—C9123.77 (9)
C2—C1—H1A118.7 (8)C6—C7—C9121.19 (8)
C6—C1—H1A119.8 (8)O1—C8—N3123.76 (9)
C3—C2—C1118.04 (9)O1—C8—N2120.04 (9)
C3—C2—H2A120.6 (9)N3—C8—N2116.20 (9)
C1—C2—H2A121.4 (9)C7—C9—H9A108.5 (11)
F1—C3—C4118.48 (9)C7—C9—H9B108.7 (10)
F1—C3—C2118.77 (9)H9A—C9—H9B112.6 (16)
C4—C3—C2122.75 (10)C7—C9—H9C113.6 (11)
C3—C4—C5118.48 (10)H9A—C9—H9C104.5 (14)
C3—C4—H4A120.7 (8)H9B—C9—H9C109.0 (14)
C5—C4—H4A120.8 (8)
C7—N1—N2—C8176.26 (9)C2—C1—C6—C7177.96 (9)
C6—C1—C2—C3−0.43 (16)N2—N1—C7—C6179.99 (8)
C1—C2—C3—F1−179.17 (10)N2—N1—C7—C9−0.23 (14)
C1—C2—C3—C40.56 (17)C5—C6—C7—N1150.01 (10)
F1—C3—C4—C5179.90 (9)C1—C6—C7—N1−28.31 (13)
C2—C3—C4—C50.17 (17)C5—C6—C7—C9−29.77 (14)
C3—C4—C5—C6−1.05 (16)C1—C6—C7—C9151.91 (10)
C4—C5—C6—C11.16 (15)N1—N2—C8—O1−179.35 (9)
C4—C5—C6—C7−177.18 (9)N1—N2—C8—N30.57 (13)
C2—C1—C6—C5−0.41 (15)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.96 (2)1.94 (2)2.8998 (11)179.2 (18)
N3—H2N3···O1ii0.82 (2)2.07 (2)2.8901 (12)176 (2)
C2—H2A···Cg1iii0.989 (17)2.927 (18)3.7250 (12)138.5 (12)
C5—H5A···Cg1iv0.976 (14)2.825 (13)3.6505 (11)142.8 (10)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.96 (2)1.94 (2)2.8998 (11)179.2 (18)
N3—H2N3⋯O1ii0.82 (2)2.07 (2)2.8901 (12)176 (2)
C2—H2ACg1iii0.989 (17)2.927 (18)3.7250 (12)138.5 (12)
C5—H5ACg1iv0.976 (14)2.825 (13)3.6505 (11)142.8 (10)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of C1–C6 benzene ring.

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Spectroscopic and biological studies on newly synthesized nickel(II) complexes of semicarbazones and thiosemicarbazones.

Authors:  Sulekh Chandra; Lokesh Kumar Gupta
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-09-06       Impact factor: 4.098

3.  4-Substituted semicarbazones of mono- and dichlorobenzaldehydes as antihypertensive agents.

Authors:  J D Warren; D L Woodward; R T Hargreaves
Journal:  J Med Chem       Date:  1977-11       Impact factor: 7.446

4.  2-(4-Isobutyl-phen-yl)-N'-[1-(4-nitro-phen-yl)ethyl-idene]propanohydrazide.

Authors:  Hoong-Kun Fun; Suchada Chantrapromma; K V Sujith; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-04

5.  4-sulphamoylphenyl semicarbazones with anticonvulsant activity.

Authors:  P Yogeeswari; D Sriram; S N Pandeya; J P Stables
Journal:  Farmaco       Date:  2004-08

6.  (E)-1-(4-Bromo-phen-yl)ethan-1-one semicarbazone.

Authors:  Hoong-Kun Fun; Jia Hao Goh; Mahesh Padaki; Shridhar Malladi; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-17

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  6 in total

1.  (E)-1-(4-Chloro-phen-yl)ethanone semi-carbazone.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; Mahesh Padaki; Shridhar Malladi; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20

2.  (E)-1-Phenyl-ethanone semicarbazone.

Authors:  Hoong-Kun Fun; Chin Sing Yeap; Mahesh Padaki; Shridhar Malladi; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11

3.  (Z)-1-(2,5-Dichloro-3-thien-yl)ethanone semicarbazone.

Authors:  Hoong-Kun Fun; Ching Kheng Quah; A M Vijesh; Chitrakar Hegde; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-15

4.  [(E)-(1-Phenyl-ethyl-idene)amino]-urea methanol monosolvate.

Authors:  Guang-Bin Liu; Peng-Sheng Chen; Chang-Xiang Liu; Ling Fu; Xu-Liang Nie
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-12

5.  (2E)-2-(4-Fluoro-benzyl-idene)hydrazinecarboxamide.

Authors:  Hoong-Kun Fun; Tze Shyang Chia; Shridhar Malladi; Arun M Isloor; Kammasandra N Shivananda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08

6.  2-Cyclo-pentyl-idenehydrazine-carboxamide.

Authors:  Hoong-Kun Fun; Wan-Sin Loh; Mahesh Padaki; Arun M Isloor; Nishitha A Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-11
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.