| Literature DB >> 21583511 |
Hoong-Kun Fun, Chin Sing Yeap, Mahesh Padaki, Shridhar Malladi, Arun M Isloor.
Abstract
In the title compound, C(9)H(11)N(3)O, the benzene ring is disordered over two positions with refined occupancies of 0.922 (5) and 0.078 (5). The program PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155] recommends the solution in the space group C2/m with a = 7.3050 (3), b = 6.6745 (2), c = 18.3853 (6) Å and β = 96.986 (2)°. However, the large number of non-extinct reflections needed to be ignored if C2/m is chosen suggested that the space group is incorrect, even though the R values are lower than that for P2(1)/c. The semicarbazone group is essentially planar, with a maximum deviation of 0.046 (1) Å for one of the N atoms. The mean plane of the semicarbazone group forms dihedral angles of 33.61 (8) and 39.1 (9)° with the benzene ring of the major and minor components, respectively. In the crystal structure, mol-ecules are linked by inter-molecular N-H⋯O hydrogen bonds into extended chains along the c axis. The crystal structure is further stabilized by weak inter-molucular C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21583511 PMCID: PMC2977181 DOI: 10.1107/S1600536809025847
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H11N3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2113 reflections |
| θ = 3.4–29.6° | |
| µ = 0.09 mm−1 | |
| β = 96.986 (2)° | Plate, colourless |
| 0.32 × 0.13 × 0.03 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2034 independent reflections |
| Radiation source: fine-focus sealed tube | 1449 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 1.1° |
| Absorption correction: multi-scan ( | |
| 9294 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2034 reflections | (Δ/σ)max < 0.001 |
| 148 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.46 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| O1 | 0.51345 (7) | 0.4963 (2) | 0.7657 (2) | 0.0165 (4) | |
| N1 | 0.32789 (9) | 0.4925 (2) | 0.8239 (3) | 0.0130 (4) | |
| N2 | 0.40259 (9) | 0.4938 (2) | 0.8715 (3) | 0.0142 (4) | |
| N3 | 0.41052 (10) | 0.4917 (3) | 0.5585 (3) | 0.0174 (5) | |
| C3 | 0.05611 (11) | 0.5011 (3) | 0.7581 (3) | 0.0169 (5) | |
| H3A | 0.0064 | 0.5007 | 0.7151 | 0.020* | |
| C6 | 0.20605 (10) | 0.5016 (3) | 0.8879 (3) | 0.0114 (4) | |
| C7 | 0.28592 (11) | 0.5045 (3) | 0.9528 (3) | 0.0119 (5) | |
| C8 | 0.44581 (11) | 0.4942 (3) | 0.7296 (3) | 0.0135 (5) | |
| C9 | 0.31370 (11) | 0.5196 (3) | 1.1541 (3) | 0.0149 (5) | |
| H9A | 0.3444 | 0.6357 | 1.1750 | 0.022* | |
| H9B | 0.3415 | 0.4018 | 1.1920 | 0.022* | |
| H9C | 0.2730 | 0.5311 | 1.2242 | 0.022* | |
| C1A | 0.17941 (11) | 0.3969 (3) | 0.7290 (3) | 0.0144 (5) | 0.922 (5) |
| H1AA | 0.2120 | 0.3267 | 0.6649 | 0.017* | 0.922 (5) |
| C2A | 0.10550 (12) | 0.3954 (3) | 0.6644 (3) | 0.0176 (5) | 0.922 (5) |
| H2AA | 0.0888 | 0.3238 | 0.5584 | 0.021* | 0.922 (5) |
| C4A | 0.08190 (11) | 0.6070 (3) | 0.9162 (3) | 0.0164 (5) | 0.922 (5) |
| H4AA | 0.0492 | 0.6784 | 0.9789 | 0.020* | 0.922 (5) |
| C5A | 0.15600 (11) | 0.6073 (3) | 0.9816 (3) | 0.0142 (5) | 0.922 (5) |
| H5AA | 0.1726 | 0.6781 | 1.0883 | 0.017* | 0.922 (5) |
| C1B | 0.1548 (15) | 0.395 (4) | 0.979 (4) | 0.022 (7)* | 0.078 (5) |
| H1BA | 0.1725 | 0.3268 | 1.0861 | 0.026* | 0.078 (5) |
| C2B | 0.0822 (18) | 0.385 (5) | 0.923 (5) | 0.032 (8)* | 0.078 (5) |
| H2BA | 0.0506 | 0.3096 | 0.9861 | 0.039* | 0.078 (5) |
| C4B | 0.1048 (17) | 0.607 (5) | 0.664 (5) | 0.032 (8)* | 0.078 (5) |
| H4BA | 0.0876 | 0.6756 | 0.5570 | 0.038* | 0.078 (5) |
| C5B | 0.1785 (16) | 0.612 (5) | 0.728 (4) | 0.025 (7)* | 0.078 (5) |
| H5BA | 0.2103 | 0.6871 | 0.6662 | 0.030* | 0.078 (5) |
| H1N2 | 0.4271 (15) | 0.500 (3) | 0.983 (4) | 0.025 (7)* | |
| H1N3 | 0.3627 (14) | 0.495 (3) | 0.543 (4) | 0.019 (6)* | |
| H2N3 | 0.4366 (14) | 0.496 (3) | 0.469 (4) | 0.020 (6)* |
| O1 | 0.0110 (7) | 0.0241 (8) | 0.0143 (8) | −0.0017 (6) | 0.0015 (6) | −0.0005 (6) |
| N1 | 0.0088 (8) | 0.0142 (8) | 0.0159 (9) | 0.0007 (6) | 0.0010 (6) | −0.0003 (7) |
| N2 | 0.0094 (8) | 0.0207 (9) | 0.0121 (9) | −0.0008 (7) | −0.0002 (7) | 0.0002 (8) |
| N3 | 0.0102 (9) | 0.0303 (11) | 0.0118 (9) | −0.0010 (8) | 0.0020 (7) | 0.0001 (8) |
| C3 | 0.0101 (9) | 0.0172 (10) | 0.0227 (12) | 0.0015 (8) | −0.0007 (8) | 0.0033 (9) |
| C6 | 0.0110 (9) | 0.0101 (9) | 0.0131 (10) | 0.0001 (7) | 0.0008 (7) | 0.0028 (8) |
| C7 | 0.0131 (9) | 0.0088 (9) | 0.0135 (10) | 0.0005 (7) | 0.0006 (8) | 0.0005 (8) |
| C8 | 0.0121 (9) | 0.0133 (9) | 0.0152 (10) | 0.0000 (7) | 0.0024 (7) | −0.0005 (8) |
| C9 | 0.0118 (9) | 0.0243 (11) | 0.0086 (10) | −0.0009 (8) | 0.0016 (7) | −0.0015 (8) |
| C1A | 0.0135 (10) | 0.0140 (11) | 0.0155 (12) | 0.0018 (8) | 0.0015 (9) | −0.0016 (9) |
| C2A | 0.0158 (11) | 0.0169 (11) | 0.0189 (12) | −0.0007 (9) | −0.0028 (9) | −0.0009 (9) |
| C4A | 0.0127 (11) | 0.0186 (12) | 0.0185 (12) | 0.0018 (9) | 0.0045 (9) | −0.0008 (9) |
| C5A | 0.0160 (11) | 0.0143 (11) | 0.0120 (11) | 0.0012 (9) | 0.0011 (8) | −0.0008 (9) |
| O1—C8 | 1.240 (2) | C6—C7 | 1.487 (3) |
| N1—C7 | 1.290 (3) | C7—C9 | 1.500 (3) |
| N1—N2 | 1.375 (2) | C9—H9A | 0.9600 |
| N2—C8 | 1.380 (3) | C9—H9B | 0.9600 |
| N2—H1N2 | 0.88 (3) | C9—H9C | 0.9600 |
| N3—C8 | 1.336 (3) | C1A—C2A | 1.383 (3) |
| N3—H1N3 | 0.87 (3) | C1A—H1AA | 0.9300 |
| N3—H2N3 | 0.85 (3) | C2A—H2AA | 0.9300 |
| C3—C4B | 1.39 (3) | C4A—C5A | 1.388 (3) |
| C3—C4A | 1.387 (3) | C4A—H4AA | 0.9300 |
| C3—C2A | 1.394 (3) | C5A—H5AA | 0.9300 |
| C3—C2B | 1.46 (3) | C1B—C2B | 1.35 (4) |
| C3—H3A | 0.9300 | C1B—H1BA | 0.9300 |
| C6—C1A | 1.392 (3) | C2B—H2BA | 0.9300 |
| C6—C5A | 1.402 (3) | C4B—C5B | 1.38 (4) |
| C6—C1B | 1.41 (3) | C4B—H4BA | 0.9300 |
| C6—C5B | 1.42 (3) | C5B—H5BA | 0.9300 |
| C7—N1—N2 | 118.86 (18) | N3—C8—N2 | 116.34 (18) |
| N1—N2—C8 | 117.31 (18) | C7—C9—H9A | 109.5 |
| N1—N2—H1N2 | 128.1 (18) | C7—C9—H9B | 109.5 |
| C8—N2—H1N2 | 114.6 (18) | H9A—C9—H9B | 109.5 |
| C8—N3—H1N3 | 119.0 (17) | C7—C9—H9C | 109.5 |
| C8—N3—H2N3 | 117.3 (18) | H9A—C9—H9C | 109.5 |
| H1N3—N3—H2N3 | 124 (2) | H9B—C9—H9C | 109.5 |
| C4B—C3—C4A | 88.6 (14) | C2A—C1A—C6 | 121.3 (2) |
| C4B—C3—C2A | 61.1 (13) | C2A—C1A—H1AA | 119.4 |
| C4A—C3—C2A | 119.32 (19) | C6—C1A—H1AA | 119.4 |
| C4B—C3—C2B | 120.7 (19) | C1A—C2A—C3 | 120.0 (2) |
| C4A—C3—C2B | 62.5 (13) | C1A—C2A—H2AA | 120.0 |
| C2A—C3—C2B | 88.3 (13) | C3—C2A—H2AA | 120.0 |
| C4B—C3—H3A | 120.2 | C3—C4A—C5A | 120.6 (2) |
| C4A—C3—H3A | 120.3 | C3—C4A—H4AA | 119.7 |
| C2A—C3—H3A | 120.3 | C5A—C4A—H4AA | 119.7 |
| C2B—C3—H3A | 119.1 | C4A—C5A—C6 | 120.4 (2) |
| C1A—C6—C5A | 118.32 (18) | C4A—C5A—H5AA | 119.8 |
| C1A—C6—C1B | 87.4 (12) | C6—C5A—H5AA | 119.8 |
| C5A—C6—C1B | 60.4 (11) | C2B—C1B—C6 | 125 (3) |
| C1A—C6—C5B | 61.3 (12) | C2B—C1B—H1BA | 117.4 |
| C5A—C6—C5B | 87.2 (12) | C6—C1B—H1BA | 117.4 |
| C1B—C6—C5B | 117.2 (17) | C1B—C2B—C3 | 116 (3) |
| C1A—C6—C7 | 120.39 (17) | C1B—C2B—H2BA | 122.1 |
| C5A—C6—C7 | 121.27 (19) | C3—C2B—H2BA | 122.1 |
| C1B—C6—C7 | 123.1 (12) | C5B—C4B—C3 | 121 (3) |
| C5B—C6—C7 | 119.7 (12) | C5B—C4B—H4BA | 119.6 |
| N1—C7—C6 | 114.93 (18) | C3—C4B—H4BA | 119.6 |
| N1—C7—C9 | 123.85 (18) | C4B—C5B—C6 | 120 (3) |
| C6—C7—C9 | 121.22 (17) | C4B—C5B—H5BA | 119.9 |
| O1—C8—N3 | 124.04 (19) | C6—C5B—H5BA | 119.9 |
| O1—C8—N2 | 119.63 (19) | ||
| C7—N1—N2—C8 | −175.79 (18) | C2B—C3—C4A—C5A | 70.3 (14) |
| N2—N1—C7—C6 | −179.91 (16) | C3—C4A—C5A—C6 | 0.5 (3) |
| N2—N1—C7—C9 | −0.2 (3) | C1A—C6—C5A—C4A | −0.1 (3) |
| C1A—C6—C7—N1 | 30.7 (3) | C1B—C6—C5A—C4A | −68.7 (14) |
| C5A—C6—C7—N1 | −147.66 (19) | C5B—C6—C5A—C4A | 54.9 (12) |
| C1B—C6—C7—N1 | 139.4 (14) | C7—C6—C5A—C4A | 178.31 (19) |
| C5B—C6—C7—N1 | −41.4 (14) | C1A—C6—C1B—C2B | −54 (3) |
| C1A—C6—C7—C9 | −149.0 (2) | C5A—C6—C1B—C2B | 71 (3) |
| C5A—C6—C7—C9 | 32.6 (3) | C5B—C6—C1B—C2B | 2(4) |
| C1B—C6—C7—C9 | −40.4 (14) | C7—C6—C1B—C2B | −179 (2) |
| C5B—C6—C7—C9 | 138.9 (14) | C6—C1B—C2B—C3 | −2(4) |
| N1—N2—C8—O1 | 179.65 (17) | C4B—C3—C2B—C1B | 2(4) |
| N1—N2—C8—N3 | −0.5 (3) | C4A—C3—C2B—C1B | −68 (2) |
| C5A—C6—C1A—C2A | −0.3 (3) | C2A—C3—C2B—C1B | 57 (3) |
| C1B—C6—C1A—C2A | 53.8 (12) | C4A—C3—C4B—C5B | 54 (3) |
| C5B—C6—C1A—C2A | −69.3 (13) | C2A—C3—C4B—C5B | −71 (3) |
| C7—C6—C1A—C2A | −178.78 (19) | C2B—C3—C4B—C5B | −2(4) |
| C6—C1A—C2A—C3 | 0.4 (3) | C3—C4B—C5B—C6 | 2(4) |
| C4B—C3—C2A—C1A | 69.9 (17) | C1A—C6—C5B—C4B | 68 (3) |
| C4A—C3—C2A—C1A | −0.1 (3) | C5A—C6—C5B—C4B | −57 (3) |
| C2B—C3—C2A—C1A | −57.0 (13) | C1B—C6—C5B—C4B | −2(3) |
| C4B—C3—C4A—C5A | −55.7 (14) | C7—C6—C5B—C4B | 179 (2) |
| C2A—C3—C4A—C5A | −0.4 (3) |
| H··· | ||||
| N2—H1N2···O1i | 0.88 (3) | 2.02 (3) | 2.901 (3) | 177.2 (19) |
| N3—H2N3···O1ii | 0.86 (3) | 2.04 (3) | 2.894 (3) | 173 (3) |
| C2A—H2AA···Cgiii | 0.93 | 2.93 | 3.707 (2) | 142 |
| C5A—H5AA···Cgiv | 0.93 | 2.90 | 3.678 (2) | 142 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.88 (3) | 2.02 (3) | 2.901 (3) | 177.2 (19) |
| N3—H2 | 0.86 (3) | 2.04 (3) | 2.894 (3) | 173 (3) |
| C2 | 0.93 | 2.93 | 3.707 (2) | 142 |
| C5 | 0.93 | 2.90 | 3.678 (2) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg is the centroid of the C1A,C2A,C3,C4A,C5A,C6 benzene ring.