Literature DB >> 21583511

(E)-1-Phenyl-ethanone semicarbazone.

Hoong-Kun Fun, Chin Sing Yeap, Mahesh Padaki, Shridhar Malladi, Arun M Isloor.   

Abstract

In the title compound, C(9)H(11)N(3)O, the benzene ring is disordered over two positions with refined occupancies of 0.922 (5) and 0.078 (5). The program PLATON [Spek (2009 ▶). Acta Cryst. D65, 148-155] recommends the solution in the space group C2/m with a = 7.3050 (3), b = 6.6745 (2), c = 18.3853 (6) Å and β = 96.986 (2)°. However, the large number of non-extinct reflections needed to be ignored if C2/m is chosen suggested that the space group is incorrect, even though the R values are lower than that for P2(1)/c. The semicarbazone group is essentially planar, with a maximum deviation of 0.046 (1) Å for one of the N atoms. The mean plane of the semicarbazone group forms dihedral angles of 33.61 (8) and 39.1 (9)° with the benzene ring of the major and minor components, respectively. In the crystal structure, mol-ecules are linked by inter-molecular N-H⋯O hydrogen bonds into extended chains along the c axis. The crystal structure is further stabilized by weak inter-molucular C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583511      PMCID: PMC2977181          DOI: 10.1107/S1600536809025847

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For applications of semicarbazone derivatives, see: Chandra & Gupta (2005 ▶); Jain et al. (2002 ▶); Pilgram (1978 ▶); Warren et al. (1977 ▶); Yogeeswari et al. (2004 ▶). For the preparation of the title compound, see: Furniss et al. (1978 ▶). For related structures, see: Fun et al. (2009a ▶,b ▶,c ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C9H11N3O M = 177.21 Monoclinic, a = 18.3853 (6) Å b = 6.6745 (2) Å c = 7.3050 (3) Å β = 96.986 (2)° V = 889.76 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.32 × 0.13 × 0.03 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.881, T max = 0.997 9294 measured reflections 2034 independent reflections 1449 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.181 S = 1.08 2034 reflections 148 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809025847/lh2857sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809025847/lh2857Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3OF(000) = 376
Mr = 177.21Dx = 1.323 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2113 reflections
a = 18.3853 (6) Åθ = 3.4–29.6°
b = 6.6745 (2) ŵ = 0.09 mm1
c = 7.3050 (3) ÅT = 100 K
β = 96.986 (2)°Plate, colourless
V = 889.76 (5) Å30.32 × 0.13 × 0.03 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2034 independent reflections
Radiation source: fine-focus sealed tube1449 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 27.5°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −23→23
Tmin = 0.881, Tmax = 0.997k = −8→8
9294 measured reflectionsl = −5→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.181H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0993P)2 + 0.2822P] where P = (Fo2 + 2Fc2)/3
2034 reflections(Δ/σ)max < 0.001
148 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.46 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.51345 (7)0.4963 (2)0.7657 (2)0.0165 (4)
N10.32789 (9)0.4925 (2)0.8239 (3)0.0130 (4)
N20.40259 (9)0.4938 (2)0.8715 (3)0.0142 (4)
N30.41052 (10)0.4917 (3)0.5585 (3)0.0174 (5)
C30.05611 (11)0.5011 (3)0.7581 (3)0.0169 (5)
H3A0.00640.50070.71510.020*
C60.20605 (10)0.5016 (3)0.8879 (3)0.0114 (4)
C70.28592 (11)0.5045 (3)0.9528 (3)0.0119 (5)
C80.44581 (11)0.4942 (3)0.7296 (3)0.0135 (5)
C90.31370 (11)0.5196 (3)1.1541 (3)0.0149 (5)
H9A0.34440.63571.17500.022*
H9B0.34150.40181.19200.022*
H9C0.27300.53111.22420.022*
C1A0.17941 (11)0.3969 (3)0.7290 (3)0.0144 (5)0.922 (5)
H1AA0.21200.32670.66490.017*0.922 (5)
C2A0.10550 (12)0.3954 (3)0.6644 (3)0.0176 (5)0.922 (5)
H2AA0.08880.32380.55840.021*0.922 (5)
C4A0.08190 (11)0.6070 (3)0.9162 (3)0.0164 (5)0.922 (5)
H4AA0.04920.67840.97890.020*0.922 (5)
C5A0.15600 (11)0.6073 (3)0.9816 (3)0.0142 (5)0.922 (5)
H5AA0.17260.67811.08830.017*0.922 (5)
C1B0.1548 (15)0.395 (4)0.979 (4)0.022 (7)*0.078 (5)
H1BA0.17250.32681.08610.026*0.078 (5)
C2B0.0822 (18)0.385 (5)0.923 (5)0.032 (8)*0.078 (5)
H2BA0.05060.30960.98610.039*0.078 (5)
C4B0.1048 (17)0.607 (5)0.664 (5)0.032 (8)*0.078 (5)
H4BA0.08760.67560.55700.038*0.078 (5)
C5B0.1785 (16)0.612 (5)0.728 (4)0.025 (7)*0.078 (5)
H5BA0.21030.68710.66620.030*0.078 (5)
H1N20.4271 (15)0.500 (3)0.983 (4)0.025 (7)*
H1N30.3627 (14)0.495 (3)0.543 (4)0.019 (6)*
H2N30.4366 (14)0.496 (3)0.469 (4)0.020 (6)*
U11U22U33U12U13U23
O10.0110 (7)0.0241 (8)0.0143 (8)−0.0017 (6)0.0015 (6)−0.0005 (6)
N10.0088 (8)0.0142 (8)0.0159 (9)0.0007 (6)0.0010 (6)−0.0003 (7)
N20.0094 (8)0.0207 (9)0.0121 (9)−0.0008 (7)−0.0002 (7)0.0002 (8)
N30.0102 (9)0.0303 (11)0.0118 (9)−0.0010 (8)0.0020 (7)0.0001 (8)
C30.0101 (9)0.0172 (10)0.0227 (12)0.0015 (8)−0.0007 (8)0.0033 (9)
C60.0110 (9)0.0101 (9)0.0131 (10)0.0001 (7)0.0008 (7)0.0028 (8)
C70.0131 (9)0.0088 (9)0.0135 (10)0.0005 (7)0.0006 (8)0.0005 (8)
C80.0121 (9)0.0133 (9)0.0152 (10)0.0000 (7)0.0024 (7)−0.0005 (8)
C90.0118 (9)0.0243 (11)0.0086 (10)−0.0009 (8)0.0016 (7)−0.0015 (8)
C1A0.0135 (10)0.0140 (11)0.0155 (12)0.0018 (8)0.0015 (9)−0.0016 (9)
C2A0.0158 (11)0.0169 (11)0.0189 (12)−0.0007 (9)−0.0028 (9)−0.0009 (9)
C4A0.0127 (11)0.0186 (12)0.0185 (12)0.0018 (9)0.0045 (9)−0.0008 (9)
C5A0.0160 (11)0.0143 (11)0.0120 (11)0.0012 (9)0.0011 (8)−0.0008 (9)
O1—C81.240 (2)C6—C71.487 (3)
N1—C71.290 (3)C7—C91.500 (3)
N1—N21.375 (2)C9—H9A0.9600
N2—C81.380 (3)C9—H9B0.9600
N2—H1N20.88 (3)C9—H9C0.9600
N3—C81.336 (3)C1A—C2A1.383 (3)
N3—H1N30.87 (3)C1A—H1AA0.9300
N3—H2N30.85 (3)C2A—H2AA0.9300
C3—C4B1.39 (3)C4A—C5A1.388 (3)
C3—C4A1.387 (3)C4A—H4AA0.9300
C3—C2A1.394 (3)C5A—H5AA0.9300
C3—C2B1.46 (3)C1B—C2B1.35 (4)
C3—H3A0.9300C1B—H1BA0.9300
C6—C1A1.392 (3)C2B—H2BA0.9300
C6—C5A1.402 (3)C4B—C5B1.38 (4)
C6—C1B1.41 (3)C4B—H4BA0.9300
C6—C5B1.42 (3)C5B—H5BA0.9300
C7—N1—N2118.86 (18)N3—C8—N2116.34 (18)
N1—N2—C8117.31 (18)C7—C9—H9A109.5
N1—N2—H1N2128.1 (18)C7—C9—H9B109.5
C8—N2—H1N2114.6 (18)H9A—C9—H9B109.5
C8—N3—H1N3119.0 (17)C7—C9—H9C109.5
C8—N3—H2N3117.3 (18)H9A—C9—H9C109.5
H1N3—N3—H2N3124 (2)H9B—C9—H9C109.5
C4B—C3—C4A88.6 (14)C2A—C1A—C6121.3 (2)
C4B—C3—C2A61.1 (13)C2A—C1A—H1AA119.4
C4A—C3—C2A119.32 (19)C6—C1A—H1AA119.4
C4B—C3—C2B120.7 (19)C1A—C2A—C3120.0 (2)
C4A—C3—C2B62.5 (13)C1A—C2A—H2AA120.0
C2A—C3—C2B88.3 (13)C3—C2A—H2AA120.0
C4B—C3—H3A120.2C3—C4A—C5A120.6 (2)
C4A—C3—H3A120.3C3—C4A—H4AA119.7
C2A—C3—H3A120.3C5A—C4A—H4AA119.7
C2B—C3—H3A119.1C4A—C5A—C6120.4 (2)
C1A—C6—C5A118.32 (18)C4A—C5A—H5AA119.8
C1A—C6—C1B87.4 (12)C6—C5A—H5AA119.8
C5A—C6—C1B60.4 (11)C2B—C1B—C6125 (3)
C1A—C6—C5B61.3 (12)C2B—C1B—H1BA117.4
C5A—C6—C5B87.2 (12)C6—C1B—H1BA117.4
C1B—C6—C5B117.2 (17)C1B—C2B—C3116 (3)
C1A—C6—C7120.39 (17)C1B—C2B—H2BA122.1
C5A—C6—C7121.27 (19)C3—C2B—H2BA122.1
C1B—C6—C7123.1 (12)C5B—C4B—C3121 (3)
C5B—C6—C7119.7 (12)C5B—C4B—H4BA119.6
N1—C7—C6114.93 (18)C3—C4B—H4BA119.6
N1—C7—C9123.85 (18)C4B—C5B—C6120 (3)
C6—C7—C9121.22 (17)C4B—C5B—H5BA119.9
O1—C8—N3124.04 (19)C6—C5B—H5BA119.9
O1—C8—N2119.63 (19)
C7—N1—N2—C8−175.79 (18)C2B—C3—C4A—C5A70.3 (14)
N2—N1—C7—C6−179.91 (16)C3—C4A—C5A—C60.5 (3)
N2—N1—C7—C9−0.2 (3)C1A—C6—C5A—C4A−0.1 (3)
C1A—C6—C7—N130.7 (3)C1B—C6—C5A—C4A−68.7 (14)
C5A—C6—C7—N1−147.66 (19)C5B—C6—C5A—C4A54.9 (12)
C1B—C6—C7—N1139.4 (14)C7—C6—C5A—C4A178.31 (19)
C5B—C6—C7—N1−41.4 (14)C1A—C6—C1B—C2B−54 (3)
C1A—C6—C7—C9−149.0 (2)C5A—C6—C1B—C2B71 (3)
C5A—C6—C7—C932.6 (3)C5B—C6—C1B—C2B2(4)
C1B—C6—C7—C9−40.4 (14)C7—C6—C1B—C2B−179 (2)
C5B—C6—C7—C9138.9 (14)C6—C1B—C2B—C3−2(4)
N1—N2—C8—O1179.65 (17)C4B—C3—C2B—C1B2(4)
N1—N2—C8—N3−0.5 (3)C4A—C3—C2B—C1B−68 (2)
C5A—C6—C1A—C2A−0.3 (3)C2A—C3—C2B—C1B57 (3)
C1B—C6—C1A—C2A53.8 (12)C4A—C3—C4B—C5B54 (3)
C5B—C6—C1A—C2A−69.3 (13)C2A—C3—C4B—C5B−71 (3)
C7—C6—C1A—C2A−178.78 (19)C2B—C3—C4B—C5B−2(4)
C6—C1A—C2A—C30.4 (3)C3—C4B—C5B—C62(4)
C4B—C3—C2A—C1A69.9 (17)C1A—C6—C5B—C4B68 (3)
C4A—C3—C2A—C1A−0.1 (3)C5A—C6—C5B—C4B−57 (3)
C2B—C3—C2A—C1A−57.0 (13)C1B—C6—C5B—C4B−2(3)
C4B—C3—C4A—C5A−55.7 (14)C7—C6—C5B—C4B179 (2)
C2A—C3—C4A—C5A−0.4 (3)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1i0.88 (3)2.02 (3)2.901 (3)177.2 (19)
N3—H2N3···O1ii0.86 (3)2.04 (3)2.894 (3)173 (3)
C2A—H2AA···Cgiii0.932.933.707 (2)142
C5A—H5AA···Cgiv0.932.903.678 (2)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1i0.88 (3)2.02 (3)2.901 (3)177.2 (19)
N3—H2N3⋯O1ii0.86 (3)2.04 (3)2.894 (3)173 (3)
C2A—H2AACgiii0.932.933.707 (2)142
C5A—H5AACgiv0.932.903.678 (2)142

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg is the centroid of the C1A,C2A,C3,C4A,C5A,C6 benzene ring.

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