| Literature DB >> 21582900 |
Hoong-Kun Fun, Ching Kheng Quah, Mahesh Padaki, Shridhar Malladi, Arun M Isloor.
Abstract
In the title compound, C(9)H(10)ClN(3)O, the semicarbazone group is approximately planar, with an r.m.s. deviation from the mean plane of 0.054 (1) Å. The dihedral angle between the least-squares planes through the semicarbazone group and the benzene ring is 30.46 (5)°. In the solid state, mol-ecules are linked via inter-molecular N-H⋯O and N-H⋯N hydrogen bonds, generating R(2) (2)(9) ring motifs which, together with R(2) (2)(8) ring motifs formed by pairs of inter-molecular N-H⋯O hydrogen bonds, lead to the formation of a seldom-observed mol-ecular trimer. Furthermore, N-H⋯O hydrogen bonds form R(2) (1)(7) ring motifs with C-H⋯O hydrogen bonds, further consolidating the crystal structure. Mol-ecules are linked by these inter-molecular inter-actions, forming two-dimensional networks parallel to (100).Entities:
Year: 2009 PMID: 21582900 PMCID: PMC2969321 DOI: 10.1107/S160053680902279X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H10ClN3O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 6351 reflections |
| θ = 3.1–32.1° | |
| µ = 0.35 mm−1 | |
| β = 109.633 (1)° | Plate, colourless |
| 0.41 × 0.20 × 0.03 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3539 independent reflections |
| Radiation source: fine-focus sealed tube | 2912 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.3°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 28636 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3539 reflections | (Δ/σ)max = 0.001 |
| 167 parameters | Δρmax = 0.45 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.023375 (16) | −0.37949 (4) | 0.13113 (2) | 0.02330 (9) | |
| O1 | 0.28038 (4) | 0.80096 (12) | 0.13075 (6) | 0.01675 (17) | |
| N1 | 0.18652 (5) | 0.38677 (13) | 0.08164 (7) | 0.01332 (18) | |
| N2 | 0.22047 (5) | 0.53956 (13) | 0.06342 (7) | 0.01416 (18) | |
| N3 | 0.24395 (6) | 0.61942 (14) | 0.23627 (8) | 0.0176 (2) | |
| C1 | 0.11370 (6) | −0.05633 (16) | −0.01844 (9) | 0.0167 (2) | |
| C2 | 0.08397 (6) | −0.21004 (16) | 0.01146 (10) | 0.0178 (2) | |
| C3 | 0.06045 (6) | −0.18847 (16) | 0.09274 (9) | 0.0172 (2) | |
| C4 | 0.06590 (6) | −0.01713 (17) | 0.14505 (9) | 0.0184 (2) | |
| C5 | 0.09612 (6) | 0.13476 (16) | 0.11541 (9) | 0.0167 (2) | |
| C6 | 0.12052 (6) | 0.11705 (15) | 0.03359 (9) | 0.0136 (2) | |
| C7 | 0.15469 (6) | 0.27915 (15) | 0.00516 (9) | 0.0137 (2) | |
| C8 | 0.24965 (6) | 0.65995 (15) | 0.14448 (8) | 0.0136 (2) | |
| C9 | 0.15172 (7) | 0.30648 (18) | −0.10430 (9) | 0.0189 (2) | |
| H1 | 0.1299 (8) | −0.071 (2) | −0.0751 (13) | 0.022 (4)* | |
| H2 | 0.0807 (8) | −0.332 (3) | −0.0235 (13) | 0.029 (4)* | |
| H4 | 0.0472 (8) | −0.007 (2) | 0.2047 (13) | 0.026 (4)* | |
| H5 | 0.0998 (8) | 0.254 (2) | 0.1502 (13) | 0.024 (4)* | |
| H9A | 0.1211 (11) | 0.237 (3) | −0.1478 (18) | 0.053 (6)* | |
| H9B | 0.1901 (12) | 0.271 (3) | −0.1107 (18) | 0.064 (7)* | |
| H9C | 0.1416 (9) | 0.433 (3) | −0.1261 (15) | 0.036 (5)* | |
| H1N2 | 0.2197 (8) | 0.579 (3) | 0.0019 (14) | 0.028 (4)* | |
| H1N3 | 0.2668 (8) | 0.684 (2) | 0.2863 (13) | 0.022 (4)* | |
| H2N3 | 0.2271 (8) | 0.522 (2) | 0.2487 (12) | 0.020 (4)* |
| Cl1 | 0.02608 (17) | 0.01993 (15) | 0.02367 (16) | −0.00699 (11) | 0.00806 (12) | 0.00422 (10) |
| O1 | 0.0227 (4) | 0.0154 (4) | 0.0128 (4) | −0.0054 (3) | 0.0067 (3) | −0.0010 (3) |
| N1 | 0.0157 (4) | 0.0121 (4) | 0.0120 (4) | −0.0013 (3) | 0.0044 (3) | 0.0007 (3) |
| N2 | 0.0202 (5) | 0.0127 (4) | 0.0100 (4) | −0.0042 (3) | 0.0056 (4) | −0.0007 (3) |
| N3 | 0.0272 (6) | 0.0163 (4) | 0.0102 (4) | −0.0065 (4) | 0.0076 (4) | −0.0015 (3) |
| C1 | 0.0176 (5) | 0.0165 (5) | 0.0163 (5) | −0.0024 (4) | 0.0064 (4) | −0.0024 (4) |
| C2 | 0.0183 (6) | 0.0141 (5) | 0.0204 (6) | −0.0024 (4) | 0.0055 (4) | −0.0019 (4) |
| C3 | 0.0165 (5) | 0.0148 (5) | 0.0188 (5) | −0.0024 (4) | 0.0039 (4) | 0.0037 (4) |
| C4 | 0.0200 (6) | 0.0194 (5) | 0.0166 (5) | −0.0019 (4) | 0.0074 (4) | 0.0013 (4) |
| C5 | 0.0200 (6) | 0.0151 (5) | 0.0158 (5) | −0.0013 (4) | 0.0073 (4) | −0.0010 (4) |
| C6 | 0.0138 (5) | 0.0142 (5) | 0.0121 (5) | −0.0004 (4) | 0.0034 (4) | 0.0013 (4) |
| C7 | 0.0158 (5) | 0.0127 (4) | 0.0121 (5) | −0.0006 (4) | 0.0040 (4) | 0.0003 (4) |
| C8 | 0.0164 (5) | 0.0129 (4) | 0.0109 (5) | −0.0002 (4) | 0.0040 (4) | −0.0005 (4) |
| C9 | 0.0266 (7) | 0.0185 (5) | 0.0124 (5) | −0.0052 (5) | 0.0077 (5) | −0.0008 (4) |
| Cl1—C3 | 1.7410 (12) | C2—C3 | 1.3842 (18) |
| O1—C8 | 1.2481 (13) | C2—H2 | 0.977 (18) |
| N1—C7 | 1.2922 (14) | C3—C4 | 1.3895 (17) |
| N1—N2 | 1.3768 (13) | C4—C5 | 1.3882 (16) |
| N2—C8 | 1.3737 (14) | C4—H4 | 1.033 (17) |
| N2—H1N2 | 0.883 (18) | C5—C6 | 1.4006 (16) |
| N3—C8 | 1.3378 (14) | C5—H5 | 0.958 (17) |
| N3—H1N3 | 0.835 (18) | C6—C7 | 1.4863 (15) |
| N3—H2N3 | 0.826 (17) | C7—C9 | 1.4943 (16) |
| C1—C2 | 1.3935 (16) | C9—H9A | 0.88 (2) |
| C1—C6 | 1.3979 (15) | C9—H9B | 0.91 (2) |
| C1—H1 | 0.963 (16) | C9—H9C | 0.94 (2) |
| C7—N1—N2 | 119.12 (9) | C4—C5—C6 | 120.81 (11) |
| C8—N2—N1 | 117.86 (9) | C4—C5—H5 | 120.0 (10) |
| C8—N2—H1N2 | 115.9 (12) | C6—C5—H5 | 119.1 (10) |
| N1—N2—H1N2 | 125.4 (12) | C1—C6—C5 | 118.92 (10) |
| C8—N3—H1N3 | 116.1 (12) | C1—C6—C7 | 120.97 (10) |
| C8—N3—H2N3 | 124.2 (11) | C5—C6—C7 | 120.08 (10) |
| H1N3—N3—H2N3 | 118.0 (16) | N1—C7—C6 | 114.71 (10) |
| C2—C1—C6 | 120.63 (11) | N1—C7—C9 | 124.82 (10) |
| C2—C1—H1 | 119.1 (10) | C6—C7—C9 | 120.46 (10) |
| C6—C1—H1 | 120.3 (10) | O1—C8—N3 | 122.47 (10) |
| C3—C2—C1 | 119.16 (11) | O1—C8—N2 | 119.73 (10) |
| C3—C2—H2 | 120.4 (10) | N3—C8—N2 | 117.80 (10) |
| C1—C2—H2 | 120.4 (10) | C7—C9—H9A | 112.1 (14) |
| C2—C3—C4 | 121.43 (11) | C7—C9—H9B | 109.4 (15) |
| C2—C3—Cl1 | 119.65 (9) | H9A—C9—H9B | 107 (2) |
| C4—C3—Cl1 | 118.92 (9) | C7—C9—H9C | 111.6 (11) |
| C5—C4—C3 | 119.04 (11) | H9A—C9—H9C | 105.6 (19) |
| C5—C4—H4 | 122.2 (10) | H9B—C9—H9C | 110.9 (19) |
| C3—C4—H4 | 118.7 (10) | ||
| C7—N1—N2—C8 | 175.03 (10) | C4—C5—C6—C7 | −177.97 (11) |
| C6—C1—C2—C3 | 0.79 (18) | N2—N1—C7—C6 | 179.22 (9) |
| C1—C2—C3—C4 | −0.05 (18) | N2—N1—C7—C9 | 0.30 (17) |
| C1—C2—C3—Cl1 | −179.84 (9) | C1—C6—C7—N1 | −146.43 (11) |
| C2—C3—C4—C5 | −0.55 (19) | C5—C6—C7—N1 | 31.82 (15) |
| Cl1—C3—C4—C5 | 179.24 (9) | C1—C6—C7—C9 | 32.55 (16) |
| C3—C4—C5—C6 | 0.41 (18) | C5—C6—C7—C9 | −149.20 (12) |
| C2—C1—C6—C5 | −0.92 (18) | N1—N2—C8—O1 | −179.37 (10) |
| C2—C1—C6—C7 | 177.35 (11) | N1—N2—C8—N3 | 0.92 (16) |
| C4—C5—C6—C1 | 0.32 (17) |
| H··· | ||||
| N2—H1N2···O1i | 0.884 (19) | 2.007 (19) | 2.8866 (12) | 173.3 (19) |
| N3—H1N3···N1ii | 0.835 (18) | 2.264 (18) | 3.0904 (14) | 170.5 (16) |
| N3—H2N3···O1iii | 0.826 (17) | 2.316 (17) | 3.0499 (13) | 148.4 (15) |
| C9—H9C···O1i | 0.94 (2) | 2.55 (2) | 3.2162 (16) | 128.1 (16) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1 | 0.884 (19) | 2.007 (19) | 2.8866 (12) | 173.3 (19) |
| N3—H1 | 0.835 (18) | 2.264 (18) | 3.0904 (14) | 170.5 (16) |
| N3—H2 | 0.826 (17) | 2.316 (17) | 3.0499 (13) | 148.4 (15) |
| C9—H9 | 0.94 (2) | 2.55 (2) | 3.2162 (16) | 128.1 (16) |
Symmetry codes: (i) ; (ii) ; (iii) .