Literature DB >> 21523026

[(E)-(1-Phenyl-ethyl-idene)amino]-urea methanol monosolvate.

Guang-Bin Liu, Peng-Sheng Chen, Chang-Xiang Liu, Ling Fu, Xu-Liang Nie.   

Abstract

In the title compound, C(9)H(11)N(3)O·CH(4)O, the semicarbazone moiety is nearly planar [maximum deviation = 0.017 (2) Å] and is twisted by a dihedral angle of 29.40 (13)° with respect to the phenyl ring. The semicarbazone moiety and phenyl ring are located on opposite sides of the C=N bond, showing the E configuration. An inter-molecular O-H⋯O and N-H⋯O hydrogen-bonding network occurs in the crystal structure.

Entities:  

Year:  2011        PMID: 21523026      PMCID: PMC3051788          DOI: 10.1107/S1600536811000225

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of semicarbazone derivatives, see: Chandra & Gupta (2005 ▶). For related structures, see: Fun et al. (2009a ▶,b ▶).

Experimental

Crystal data

C9H11N3O·CH4O M = 209.25 Monoclinic, a = 6.629 (3) Å b = 8.371 (4) Å c = 20.329 (9) Å β = 99.181 (5)° V = 1113.6 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.24 × 0.22 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer 8148 measured reflections 2057 independent reflections 1617 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.128 S = 1.07 2057 reflections 140 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811000225/xu5132sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000225/xu5132Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3O·CH4OF(000) = 448
Mr = 209.25Dx = 1.248 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2808 reflections
a = 6.629 (3) Åθ = 2.6–28.2°
b = 8.371 (4) ŵ = 0.09 mm1
c = 20.329 (9) ÅT = 296 K
β = 99.181 (5)°Block, colourless
V = 1113.6 (8) Å30.24 × 0.22 × 0.18 mm
Z = 4
Bruker APEXII CCD diffractometer1617 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 25.5°, θmin = 2.6°
φ and ω scansh = −8→8
8148 measured reflectionsk = −9→10
2057 independent reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0583P)2 + 0.3389P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2057 reflectionsΔρmax = 0.26 e Å3
140 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.020 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0487 (3)0.6825 (3)0.73837 (11)0.0636 (6)
H10.02330.74790.70100.076*
C2−0.0980 (3)0.5772 (3)0.75182 (11)0.0630 (6)
H2−0.22330.57170.72380.076*
C3−0.0590 (3)0.4793 (3)0.80720 (10)0.0550 (6)
H3−0.15820.40760.81630.066*
C40.1262 (3)0.4875 (2)0.84901 (9)0.0438 (5)
H40.15040.42160.88630.053*
C50.2773 (2)0.5931 (2)0.83614 (8)0.0371 (4)
C60.2342 (3)0.6916 (2)0.78033 (10)0.0521 (5)
H60.33190.76450.77120.063*
C70.6059 (3)0.7470 (2)0.88452 (10)0.0509 (5)
H7A0.64570.77520.93050.076*
H7B0.52680.83220.86170.076*
H7C0.72570.72940.86450.076*
C80.4800 (2)0.5973 (2)0.87964 (8)0.0362 (4)
C90.7858 (2)0.3143 (2)0.97715 (8)0.0361 (4)
C100.0959 (4)0.0359 (3)0.89062 (11)0.0673 (6)
H10A−0.02770.09670.87980.101*
H10B0.0627−0.07460.89570.101*
H10C0.17620.04660.85550.101*
N10.5332 (2)0.46585 (17)0.91022 (7)0.0362 (4)
N20.7209 (2)0.45770 (17)0.95027 (7)0.0398 (4)
H80.79570.54160.95820.048*
O10.96431 (17)0.30074 (14)1.00688 (6)0.0458 (4)
N30.6552 (2)0.19317 (18)0.96944 (9)0.0526 (5)
H3A0.69270.10070.98530.063*
H3B0.53300.20710.94860.063*
O20.20857 (19)0.09309 (17)0.95077 (7)0.0544 (4)
H2A0.13700.15380.96880.082*
U11U22U33U12U13U23
C10.0641 (14)0.0727 (15)0.0482 (12)0.0140 (12)−0.0092 (10)0.0110 (11)
C20.0449 (11)0.0791 (16)0.0569 (13)0.0150 (11)−0.0162 (10)−0.0122 (12)
C30.0361 (10)0.0651 (13)0.0613 (13)−0.0020 (9)0.0001 (9)−0.0118 (11)
C40.0392 (9)0.0484 (11)0.0427 (10)0.0015 (8)0.0032 (8)0.0004 (8)
C50.0372 (9)0.0385 (9)0.0344 (9)0.0060 (7)0.0021 (7)−0.0030 (7)
C60.0502 (11)0.0547 (12)0.0484 (11)0.0029 (9)−0.0009 (9)0.0092 (9)
C70.0467 (10)0.0442 (11)0.0569 (12)−0.0038 (8)−0.0063 (9)0.0047 (9)
C80.0360 (9)0.0400 (10)0.0319 (9)0.0005 (7)0.0030 (7)0.0003 (7)
C90.0318 (8)0.0383 (9)0.0365 (9)−0.0005 (7)0.0008 (7)0.0000 (7)
C100.0706 (14)0.0675 (15)0.0605 (14)−0.0034 (12)0.0005 (12)−0.0025 (11)
N10.0310 (7)0.0409 (8)0.0346 (8)−0.0004 (6)−0.0012 (6)0.0024 (6)
N20.0334 (7)0.0370 (8)0.0450 (9)−0.0043 (6)−0.0058 (6)0.0042 (6)
O10.0337 (7)0.0422 (7)0.0562 (8)0.0000 (5)−0.0085 (6)0.0011 (6)
N30.0356 (8)0.0401 (9)0.0758 (12)−0.0042 (7)−0.0096 (8)0.0125 (8)
O20.0420 (7)0.0510 (9)0.0658 (9)0.0044 (6)−0.0047 (6)−0.0037 (7)
C1—C21.372 (3)C7—H7C0.9600
C1—C61.382 (3)C8—N11.285 (2)
C1—H10.9300C9—O11.2453 (19)
C2—C31.383 (3)C9—N31.326 (2)
C2—H20.9300C9—N21.360 (2)
C3—C41.379 (2)C10—O21.411 (2)
C3—H30.9300C10—H10A0.9600
C4—C51.391 (3)C10—H10B0.9600
C4—H40.9300C10—H10C0.9600
C5—C61.395 (3)N1—N21.3757 (18)
C5—C81.486 (2)N2—H80.8600
C6—H60.9300N3—H3A0.8600
C7—C81.500 (3)N3—H3B0.8600
C7—H7A0.9600O2—H2A0.8200
C7—H7B0.9600
C2—C1—C6120.1 (2)H7A—C7—H7C109.5
C2—C1—H1120.0H7B—C7—H7C109.5
C6—C1—H1120.0N1—C8—C5114.83 (15)
C1—C2—C3119.75 (18)N1—C8—C7125.18 (15)
C1—C2—H2120.1C5—C8—C7119.98 (15)
C3—C2—H2120.1O1—C9—N3122.64 (15)
C4—C3—C2120.3 (2)O1—C9—N2119.38 (15)
C4—C3—H3119.8N3—C9—N2117.96 (14)
C2—C3—H3119.8O2—C10—H10A109.5
C3—C4—C5120.83 (18)O2—C10—H10B109.5
C3—C4—H4119.6H10A—C10—H10B109.5
C5—C4—H4119.6O2—C10—H10C109.5
C4—C5—C6117.92 (16)H10A—C10—H10C109.5
C4—C5—C8120.83 (15)H10B—C10—H10C109.5
C6—C5—C8121.22 (16)C8—N1—N2118.77 (14)
C1—C6—C5121.1 (2)C9—N2—N1118.67 (13)
C1—C6—H6119.5C9—N2—H8120.7
C5—C6—H6119.5N1—N2—H8120.7
C8—C7—H7A109.5C9—N3—H3A120.0
C8—C7—H7B109.5C9—N3—H3B120.0
H7A—C7—H7B109.5H3A—N3—H3B120.0
C8—C7—H7C109.5C10—O2—H2A109.5
C6—C1—C2—C3−0.5 (3)C6—C5—C8—N1−152.23 (17)
C1—C2—C3—C40.2 (3)C4—C5—C8—C7−154.55 (18)
C2—C3—C4—C5−0.4 (3)C6—C5—C8—C727.1 (3)
C3—C4—C5—C60.9 (3)C5—C8—N1—N2178.39 (14)
C3—C4—C5—C8−177.47 (17)C7—C8—N1—N2−0.9 (3)
C2—C1—C6—C51.0 (3)O1—C9—N2—N1171.57 (15)
C4—C5—C6—C1−1.2 (3)N3—C9—N2—N1−7.4 (2)
C8—C5—C6—C1177.18 (18)C8—N1—N2—C9−173.38 (16)
C4—C5—C8—N126.1 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2A···O1i0.821.932.745 (2)177
N2—H8···O1ii0.862.102.936 (2)164
N3—H3A···O2iii0.862.122.953 (2)164
N3—H3B···O20.862.363.042 (2)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O1i0.821.932.745 (2)177
N2—H8⋯O1ii0.862.102.936 (2)164
N3—H3A⋯O2iii0.862.122.953 (2)164
N3—H3B⋯O20.862.363.042 (2)137

Symmetry codes: (i) ; (ii) ; (iii) .

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