| Literature DB >> 22969569 |
Hoong-Kun Fun, Wan-Sin Loh, Mahesh Padaki, Arun M Isloor, Nishitha A Isloor.
Abstract
The asymmetric unit of the title compound, C(6)H(11)N(3)O, consists of two independent mol-ecules in which the cyclo-pentane rings adopt envelope conformations with CH(2) grouping as the flap and the semicarbazone groups are essentially planar, with maximums deviation of 0.0311 (12) and 0.0285 (12) Å. In the crystal, N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules to form sheets lying parallel to the ab plane.Entities:
Year: 2012 PMID: 22969569 PMCID: PMC3435698 DOI: 10.1107/S1600536812034599
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H11N3O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3109 reflections |
| θ = 2.7–29.3° | |
| µ = 0.09 mm−1 | |
| β = 95.126 (1)° | Plate, colourless |
| 0.40 × 0.20 × 0.05 mm | |
| Bruker SMART APEXII CCD diffractometer | 4231 independent reflections |
| Radiation source: fine-focus sealed tube | 3120 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.1°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 14322 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4231 reflections | (Δ/σ)max < 0.001 |
| 205 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1B | 0.14864 (10) | 0.11961 (9) | 0.00969 (7) | 0.0163 (2) | |
| N1B | −0.03324 (12) | 0.35060 (10) | 0.12404 (8) | 0.0142 (2) | |
| N2B | 0.07174 (12) | 0.29357 (11) | 0.07505 (8) | 0.0148 (2) | |
| N3B | −0.07584 (13) | 0.11717 (12) | 0.06934 (9) | 0.0180 (3) | |
| C1B | −0.11403 (15) | 0.53548 (13) | 0.19876 (10) | 0.0179 (3) | |
| H1BA | −0.0892 | 0.5196 | 0.2633 | 0.021* | |
| H1BB | −0.2200 | 0.5125 | 0.1824 | 0.021* | |
| C2B | −0.08570 (15) | 0.67107 (13) | 0.17588 (10) | 0.0196 (3) | |
| H2BA | −0.1079 | 0.7264 | 0.2256 | 0.024* | |
| H2BB | −0.1479 | 0.6964 | 0.1211 | 0.024* | |
| C3B | 0.08159 (15) | 0.67431 (13) | 0.16132 (10) | 0.0187 (3) | |
| H3BA | 0.1436 | 0.6815 | 0.2190 | 0.022* | |
| H3BB | 0.1043 | 0.7450 | 0.1227 | 0.022* | |
| C4B | 0.11103 (14) | 0.55001 (12) | 0.11528 (9) | 0.0154 (3) | |
| H4BA | 0.1036 | 0.5597 | 0.0495 | 0.018* | |
| H4BB | 0.2117 | 0.5175 | 0.1357 | 0.018* | |
| C5B | −0.01062 (14) | 0.46502 (12) | 0.14338 (9) | 0.0140 (3) | |
| C6B | 0.05040 (14) | 0.17321 (12) | 0.04950 (9) | 0.0132 (3) | |
| O1A | 0.35640 (10) | 0.37841 (9) | 0.00812 (7) | 0.0169 (2) | |
| N1A | 0.57800 (12) | 0.13301 (11) | 0.09989 (8) | 0.0145 (2) | |
| N2A | 0.45488 (12) | 0.19836 (11) | 0.06156 (8) | 0.0153 (3) | |
| N3A | 0.60763 (13) | 0.36934 (12) | 0.04762 (9) | 0.0194 (3) | |
| C1A | 0.67282 (15) | −0.05543 (13) | 0.17484 (10) | 0.0173 (3) | |
| H1AA | 0.7522 | −0.0047 | 0.2072 | 0.021* | |
| H1AB | 0.7184 | −0.1093 | 0.1313 | 0.021* | |
| C2A | 0.58742 (15) | −0.13169 (14) | 0.23954 (10) | 0.0202 (3) | |
| H2AA | 0.5718 | −0.0837 | 0.2941 | 0.024* | |
| H2AB | 0.6417 | −0.2091 | 0.2569 | 0.024* | |
| C3A | 0.43811 (16) | −0.15927 (14) | 0.18545 (10) | 0.0208 (3) | |
| H3AA | 0.3591 | −0.1788 | 0.2254 | 0.025* | |
| H3AB | 0.4482 | −0.2299 | 0.1444 | 0.025* | |
| C4A | 0.40070 (15) | −0.03906 (13) | 0.13277 (10) | 0.0176 (3) | |
| H4AA | 0.3551 | −0.0577 | 0.0718 | 0.021* | |
| H4AB | 0.3307 | 0.0133 | 0.1637 | 0.021* | |
| C5A | 0.55099 (14) | 0.02476 (12) | 0.12953 (9) | 0.0137 (3) | |
| C6A | 0.47038 (14) | 0.31899 (12) | 0.03773 (9) | 0.0138 (3) | |
| H1N2 | 0.3656 (19) | 0.1655 (16) | 0.0516 (12) | 0.028 (5)* | |
| H1N3 | 0.682 (2) | 0.3267 (17) | 0.0710 (12) | 0.030 (5)* | |
| H2N3 | 0.6182 (19) | 0.4510 (18) | 0.0303 (12) | 0.028 (5)* | |
| H2N2 | 0.1582 (19) | 0.3309 (16) | 0.0600 (12) | 0.027 (5)* | |
| H3N3 | −0.0968 (19) | 0.0420 (18) | 0.0474 (12) | 0.028 (5)* | |
| H4N3 | −0.1441 (19) | 0.1587 (16) | 0.0927 (12) | 0.026 (5)* |
| O1B | 0.0139 (4) | 0.0136 (5) | 0.0217 (5) | 0.0001 (3) | 0.0040 (4) | −0.0029 (4) |
| N1B | 0.0147 (5) | 0.0156 (6) | 0.0128 (5) | 0.0013 (4) | 0.0032 (4) | −0.0006 (4) |
| N2B | 0.0128 (5) | 0.0126 (6) | 0.0197 (6) | −0.0009 (4) | 0.0059 (4) | −0.0018 (5) |
| N3B | 0.0165 (5) | 0.0131 (6) | 0.0255 (7) | −0.0022 (5) | 0.0082 (5) | −0.0039 (5) |
| C1B | 0.0174 (6) | 0.0177 (7) | 0.0189 (7) | −0.0005 (5) | 0.0038 (5) | −0.0045 (6) |
| C2B | 0.0204 (6) | 0.0168 (7) | 0.0214 (7) | 0.0043 (5) | 0.0000 (5) | −0.0050 (6) |
| C3B | 0.0205 (6) | 0.0138 (7) | 0.0216 (7) | −0.0006 (5) | −0.0001 (6) | −0.0026 (6) |
| C4B | 0.0153 (6) | 0.0150 (6) | 0.0158 (7) | 0.0005 (5) | 0.0015 (5) | −0.0005 (5) |
| C5B | 0.0141 (6) | 0.0143 (6) | 0.0136 (6) | 0.0001 (5) | 0.0002 (5) | 0.0007 (5) |
| C6B | 0.0138 (6) | 0.0127 (6) | 0.0128 (6) | 0.0006 (5) | −0.0006 (5) | 0.0009 (5) |
| O1A | 0.0136 (4) | 0.0144 (5) | 0.0226 (5) | 0.0005 (4) | 0.0006 (4) | 0.0020 (4) |
| N1A | 0.0127 (5) | 0.0149 (6) | 0.0161 (6) | 0.0025 (4) | 0.0026 (4) | 0.0001 (5) |
| N2A | 0.0113 (5) | 0.0129 (6) | 0.0216 (6) | −0.0004 (4) | 0.0007 (4) | 0.0031 (5) |
| N3A | 0.0132 (5) | 0.0153 (6) | 0.0293 (7) | −0.0007 (4) | 0.0001 (5) | 0.0057 (5) |
| C1A | 0.0156 (6) | 0.0190 (7) | 0.0175 (7) | 0.0021 (5) | 0.0034 (5) | 0.0042 (6) |
| C2A | 0.0193 (7) | 0.0233 (8) | 0.0181 (7) | −0.0014 (6) | 0.0032 (5) | 0.0063 (6) |
| C3A | 0.0213 (7) | 0.0185 (7) | 0.0225 (7) | −0.0054 (5) | 0.0013 (6) | 0.0064 (6) |
| C4A | 0.0159 (6) | 0.0174 (7) | 0.0195 (7) | −0.0022 (5) | 0.0019 (5) | 0.0022 (6) |
| C5A | 0.0149 (6) | 0.0149 (7) | 0.0118 (6) | 0.0005 (5) | 0.0036 (5) | −0.0012 (5) |
| C6A | 0.0145 (6) | 0.0143 (7) | 0.0131 (6) | 0.0001 (5) | 0.0039 (5) | −0.0019 (5) |
| O1B—C6B | 1.2488 (16) | O1A—C6A | 1.2526 (15) |
| N1B—C5B | 1.2806 (17) | N1A—C5A | 1.2811 (18) |
| N1B—N2B | 1.3882 (16) | N1A—N2A | 1.3892 (14) |
| N2B—C6B | 1.3631 (17) | N2A—C6A | 1.3605 (17) |
| N2B—H2N2 | 0.919 (17) | N2A—H1N2 | 0.875 (17) |
| N3B—C6B | 1.3385 (17) | N3A—C6A | 1.3394 (17) |
| N3B—H3N3 | 0.889 (19) | N3A—H1N3 | 0.860 (18) |
| N3B—H4N3 | 0.858 (18) | N3A—H2N3 | 0.926 (19) |
| C1B—C5B | 1.5049 (19) | C1A—C5A | 1.5062 (17) |
| C1B—C2B | 1.530 (2) | C1A—C2A | 1.529 (2) |
| C1B—H1BA | 0.9900 | C1A—H1AA | 0.9900 |
| C1B—H1BB | 0.9900 | C1A—H1AB | 0.9900 |
| C2B—C3B | 1.533 (2) | C2A—C3A | 1.5300 (18) |
| C2B—H2BA | 0.9900 | C2A—H2AA | 0.9900 |
| C2B—H2BB | 0.9900 | C2A—H2AB | 0.9900 |
| C3B—C4B | 1.5427 (19) | C3A—C4A | 1.541 (2) |
| C3B—H3BA | 0.9900 | C3A—H3AA | 0.9900 |
| C3B—H3BB | 0.9900 | C3A—H3AB | 0.9900 |
| C4B—C5B | 1.5124 (19) | C4A—C5A | 1.5159 (18) |
| C4B—H4BA | 0.9900 | C4A—H4AA | 0.9900 |
| C4B—H4BB | 0.9900 | C4A—H4AB | 0.9900 |
| C5B—N1B—N2B | 116.56 (11) | C5A—N1A—N2A | 116.09 (11) |
| C6B—N2B—N1B | 119.17 (11) | C6A—N2A—N1A | 119.94 (11) |
| C6B—N2B—H2N2 | 116.7 (11) | C6A—N2A—H1N2 | 117.2 (12) |
| N1B—N2B—H2N2 | 124.1 (11) | N1A—N2A—H1N2 | 122.9 (12) |
| C6B—N3B—H3N3 | 118.9 (12) | C6A—N3A—H1N3 | 119.9 (12) |
| C6B—N3B—H4N3 | 120.1 (12) | C6A—N3A—H2N3 | 118.1 (10) |
| H3N3—N3B—H4N3 | 119.6 (16) | H1N3—N3A—H2N3 | 121.9 (16) |
| C5B—C1B—C2B | 103.70 (12) | C5A—C1A—C2A | 102.33 (11) |
| C5B—C1B—H1BA | 111.0 | C5A—C1A—H1AA | 111.3 |
| C2B—C1B—H1BA | 111.0 | C2A—C1A—H1AA | 111.3 |
| C5B—C1B—H1BB | 111.0 | C5A—C1A—H1AB | 111.3 |
| C2B—C1B—H1BB | 111.0 | C2A—C1A—H1AB | 111.3 |
| H1BA—C1B—H1BB | 109.0 | H1AA—C1A—H1AB | 109.2 |
| C1B—C2B—C3B | 103.74 (11) | C1A—C2A—C3A | 103.28 (11) |
| C1B—C2B—H2BA | 111.0 | C1A—C2A—H2AA | 111.1 |
| C3B—C2B—H2BA | 111.0 | C3A—C2A—H2AA | 111.1 |
| C1B—C2B—H2BB | 111.0 | C1A—C2A—H2AB | 111.1 |
| C3B—C2B—H2BB | 111.0 | C3A—C2A—H2AB | 111.1 |
| H2BA—C2B—H2BB | 109.0 | H2AA—C2A—H2AB | 109.1 |
| C2B—C3B—C4B | 104.61 (11) | C2A—C3A—C4A | 104.38 (11) |
| C2B—C3B—H3BA | 110.8 | C2A—C3A—H3AA | 110.9 |
| C4B—C3B—H3BA | 110.8 | C4A—C3A—H3AA | 110.9 |
| C2B—C3B—H3BB | 110.8 | C2A—C3A—H3AB | 110.9 |
| C4B—C3B—H3BB | 110.8 | C4A—C3A—H3AB | 110.9 |
| H3BA—C3B—H3BB | 108.9 | H3AA—C3A—H3AB | 108.9 |
| C5B—C4B—C3B | 104.26 (11) | C5A—C4A—C3A | 104.26 (10) |
| C5B—C4B—H4BA | 110.9 | C5A—C4A—H4AA | 110.9 |
| C3B—C4B—H4BA | 110.9 | C3A—C4A—H4AA | 110.9 |
| C5B—C4B—H4BB | 110.9 | C5A—C4A—H4AB | 110.9 |
| C3B—C4B—H4BB | 110.9 | C3A—C4A—H4AB | 110.9 |
| H4BA—C4B—H4BB | 108.9 | H4AA—C4A—H4AB | 108.9 |
| N1B—C5B—C1B | 121.34 (12) | N1A—C5A—C1A | 121.98 (11) |
| N1B—C5B—C4B | 128.67 (13) | N1A—C5A—C4A | 128.40 (12) |
| C1B—C5B—C4B | 109.97 (11) | C1A—C5A—C4A | 109.46 (11) |
| O1B—C6B—N3B | 122.81 (12) | O1A—C6A—N3A | 122.79 (13) |
| O1B—C6B—N2B | 119.30 (12) | O1A—C6A—N2A | 118.98 (11) |
| N3B—C6B—N2B | 117.89 (12) | N3A—C6A—N2A | 118.24 (12) |
| C5B—N1B—N2B—C6B | −177.45 (11) | C5A—N1A—N2A—C6A | 172.46 (13) |
| C5B—C1B—C2B—C3B | −34.21 (13) | C5A—C1A—C2A—C3A | 38.89 (14) |
| C1B—C2B—C3B—C4B | 36.78 (14) | C1A—C2A—C3A—C4A | −38.43 (15) |
| C2B—C3B—C4B—C5B | −24.62 (14) | C2A—C3A—C4A—C5A | 22.39 (15) |
| N2B—N1B—C5B—C1B | −177.98 (11) | N2A—N1A—C5A—C1A | −178.43 (12) |
| N2B—N1B—C5B—C4B | 4.09 (19) | N2A—N1A—C5A—C4A | −3.6 (2) |
| C2B—C1B—C5B—N1B | −158.97 (12) | C2A—C1A—C5A—N1A | 150.21 (13) |
| C2B—C1B—C5B—C4B | 19.31 (13) | C2A—C1A—C5A—C4A | −25.50 (15) |
| C3B—C4B—C5B—N1B | −178.62 (13) | C3A—C4A—C5A—N1A | −173.30 (14) |
| C3B—C4B—C5B—C1B | 3.26 (13) | C3A—C4A—C5A—C1A | 2.06 (15) |
| N1B—N2B—C6B—O1B | −176.11 (11) | N1A—N2A—C6A—O1A | −175.88 (12) |
| N1B—N2B—C6B—N3B | 3.25 (18) | N1A—N2A—C6A—N3A | 3.7 (2) |
| H··· | ||||
| N2 | 0.875 (17) | 2.048 (17) | 2.9088 (14) | 167.7 (17) |
| N3 | 0.858 (18) | 2.614 (18) | 3.3214 (16) | 140.5 (16) |
| N3 | 0.926 (19) | 1.949 (19) | 2.8749 (16) | 178.7 (15) |
| N2 | 0.919 (17) | 2.065 (17) | 2.9663 (14) | 166.6 (16) |
| N3 | 0.889 (19) | 1.980 (19) | 2.8682 (16) | 175.9 (18) |
| N3 | 0.858 (17) | 2.515 (17) | 3.1771 (16) | 134.7 (15) |
| C1 | 0.99 | 2.52 | 3.3923 (18) | 146 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2 | 0.875 (17) | 2.048 (17) | 2.9088 (14) | 167.7 (17) |
| N3 | 0.858 (18) | 2.614 (18) | 3.3214 (16) | 140.5 (16) |
| N3 | 0.926 (19) | 1.949 (19) | 2.8749 (16) | 178.7 (15) |
| N2 | 0.919 (17) | 2.065 (17) | 2.9663 (14) | 166.6 (16) |
| N3 | 0.889 (19) | 1.980 (19) | 2.8682 (16) | 175.9 (18) |
| N3 | 0.858 (17) | 2.515 (17) | 3.1771 (16) | 134.7 (15) |
| C1 | 0.99 | 2.52 | 3.3923 (18) | 146 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .