Literature DB >> 22969569

2-Cyclo-pentyl-idenehydrazine-carboxamide.

Hoong-Kun Fun, Wan-Sin Loh, Mahesh Padaki, Arun M Isloor, Nishitha A Isloor.   

Abstract

The asymmetric unit of the title compound, C(6)H(11)N(3)O, consists of two independent mol-ecules in which the cyclo-pentane rings adopt envelope conformations with CH(2) grouping as the flap and the semicarbazone groups are essentially planar, with maximums deviation of 0.0311 (12) and 0.0285 (12) Å. In the crystal, N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds link the mol-ecules to form sheets lying parallel to the ab plane.

Entities:  

Year:  2012        PMID: 22969569      PMCID: PMC3435698          DOI: 10.1107/S1600536812034599

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of semicarbazones, see: Dogan et al. (1999 ▶); Pandeya & Dimmock (1993 ▶); Pandeya et al. (1998 ▶); Yogeeswari et al. (2004 ▶); Sriram et al. (2004 ▶); Fun et al. (2011 ▶). For related structures, see: Fun et al. (2009a ▶,b ▶). For further synthetic details, see: Furniss et al. (1978 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H11N3O M = 141.18 Monoclinic, a = 8.9507 (1) Å b = 10.7929 (2) Å c = 15.0204 (2) Å β = 95.126 (1)° V = 1445.23 (4) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.40 × 0.20 × 0.05 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.964, T max = 0.995 14322 measured reflections 4231 independent reflections 3120 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.114 S = 1.00 4231 reflections 205 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812034599/hb6915sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034599/hb6915Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812034599/hb6915Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H11N3OF(000) = 608
Mr = 141.18Dx = 1.298 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3109 reflections
a = 8.9507 (1) Åθ = 2.7–29.3°
b = 10.7929 (2) ŵ = 0.09 mm1
c = 15.0204 (2) ÅT = 100 K
β = 95.126 (1)°Plate, colourless
V = 1445.23 (4) Å30.40 × 0.20 × 0.05 mm
Z = 8
Bruker SMART APEXII CCD diffractometer4231 independent reflections
Radiation source: fine-focus sealed tube3120 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
φ and ω scansθmax = 30.1°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→12
Tmin = 0.964, Tmax = 0.995k = −12→15
14322 measured reflectionsl = −18→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0422P)2 + 0.6439P] where P = (Fo2 + 2Fc2)/3
4231 reflections(Δ/σ)max < 0.001
205 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1B0.14864 (10)0.11961 (9)0.00969 (7)0.0163 (2)
N1B−0.03324 (12)0.35060 (10)0.12404 (8)0.0142 (2)
N2B0.07174 (12)0.29357 (11)0.07505 (8)0.0148 (2)
N3B−0.07584 (13)0.11717 (12)0.06934 (9)0.0180 (3)
C1B−0.11403 (15)0.53548 (13)0.19876 (10)0.0179 (3)
H1BA−0.08920.51960.26330.021*
H1BB−0.22000.51250.18240.021*
C2B−0.08570 (15)0.67107 (13)0.17588 (10)0.0196 (3)
H2BA−0.10790.72640.22560.024*
H2BB−0.14790.69640.12110.024*
C3B0.08159 (15)0.67431 (13)0.16132 (10)0.0187 (3)
H3BA0.14360.68150.21900.022*
H3BB0.10430.74500.12270.022*
C4B0.11103 (14)0.55001 (12)0.11528 (9)0.0154 (3)
H4BA0.10360.55970.04950.018*
H4BB0.21170.51750.13570.018*
C5B−0.01062 (14)0.46502 (12)0.14338 (9)0.0140 (3)
C6B0.05040 (14)0.17321 (12)0.04950 (9)0.0132 (3)
O1A0.35640 (10)0.37841 (9)0.00812 (7)0.0169 (2)
N1A0.57800 (12)0.13301 (11)0.09989 (8)0.0145 (2)
N2A0.45488 (12)0.19836 (11)0.06156 (8)0.0153 (3)
N3A0.60763 (13)0.36934 (12)0.04762 (9)0.0194 (3)
C1A0.67282 (15)−0.05543 (13)0.17484 (10)0.0173 (3)
H1AA0.7522−0.00470.20720.021*
H1AB0.7184−0.10930.13130.021*
C2A0.58742 (15)−0.13169 (14)0.23954 (10)0.0202 (3)
H2AA0.5718−0.08370.29410.024*
H2AB0.6417−0.20910.25690.024*
C3A0.43811 (16)−0.15927 (14)0.18545 (10)0.0208 (3)
H3AA0.3591−0.17880.22540.025*
H3AB0.4482−0.22990.14440.025*
C4A0.40070 (15)−0.03906 (13)0.13277 (10)0.0176 (3)
H4AA0.3551−0.05770.07180.021*
H4AB0.33070.01330.16370.021*
C5A0.55099 (14)0.02476 (12)0.12953 (9)0.0137 (3)
C6A0.47038 (14)0.31899 (12)0.03773 (9)0.0138 (3)
H1N20.3656 (19)0.1655 (16)0.0516 (12)0.028 (5)*
H1N30.682 (2)0.3267 (17)0.0710 (12)0.030 (5)*
H2N30.6182 (19)0.4510 (18)0.0303 (12)0.028 (5)*
H2N20.1582 (19)0.3309 (16)0.0600 (12)0.027 (5)*
H3N3−0.0968 (19)0.0420 (18)0.0474 (12)0.028 (5)*
H4N3−0.1441 (19)0.1587 (16)0.0927 (12)0.026 (5)*
U11U22U33U12U13U23
O1B0.0139 (4)0.0136 (5)0.0217 (5)0.0001 (3)0.0040 (4)−0.0029 (4)
N1B0.0147 (5)0.0156 (6)0.0128 (5)0.0013 (4)0.0032 (4)−0.0006 (4)
N2B0.0128 (5)0.0126 (6)0.0197 (6)−0.0009 (4)0.0059 (4)−0.0018 (5)
N3B0.0165 (5)0.0131 (6)0.0255 (7)−0.0022 (5)0.0082 (5)−0.0039 (5)
C1B0.0174 (6)0.0177 (7)0.0189 (7)−0.0005 (5)0.0038 (5)−0.0045 (6)
C2B0.0204 (6)0.0168 (7)0.0214 (7)0.0043 (5)0.0000 (5)−0.0050 (6)
C3B0.0205 (6)0.0138 (7)0.0216 (7)−0.0006 (5)−0.0001 (6)−0.0026 (6)
C4B0.0153 (6)0.0150 (6)0.0158 (7)0.0005 (5)0.0015 (5)−0.0005 (5)
C5B0.0141 (6)0.0143 (6)0.0136 (6)0.0001 (5)0.0002 (5)0.0007 (5)
C6B0.0138 (6)0.0127 (6)0.0128 (6)0.0006 (5)−0.0006 (5)0.0009 (5)
O1A0.0136 (4)0.0144 (5)0.0226 (5)0.0005 (4)0.0006 (4)0.0020 (4)
N1A0.0127 (5)0.0149 (6)0.0161 (6)0.0025 (4)0.0026 (4)0.0001 (5)
N2A0.0113 (5)0.0129 (6)0.0216 (6)−0.0004 (4)0.0007 (4)0.0031 (5)
N3A0.0132 (5)0.0153 (6)0.0293 (7)−0.0007 (4)0.0001 (5)0.0057 (5)
C1A0.0156 (6)0.0190 (7)0.0175 (7)0.0021 (5)0.0034 (5)0.0042 (6)
C2A0.0193 (7)0.0233 (8)0.0181 (7)−0.0014 (6)0.0032 (5)0.0063 (6)
C3A0.0213 (7)0.0185 (7)0.0225 (7)−0.0054 (5)0.0013 (6)0.0064 (6)
C4A0.0159 (6)0.0174 (7)0.0195 (7)−0.0022 (5)0.0019 (5)0.0022 (6)
C5A0.0149 (6)0.0149 (7)0.0118 (6)0.0005 (5)0.0036 (5)−0.0012 (5)
C6A0.0145 (6)0.0143 (7)0.0131 (6)0.0001 (5)0.0039 (5)−0.0019 (5)
O1B—C6B1.2488 (16)O1A—C6A1.2526 (15)
N1B—C5B1.2806 (17)N1A—C5A1.2811 (18)
N1B—N2B1.3882 (16)N1A—N2A1.3892 (14)
N2B—C6B1.3631 (17)N2A—C6A1.3605 (17)
N2B—H2N20.919 (17)N2A—H1N20.875 (17)
N3B—C6B1.3385 (17)N3A—C6A1.3394 (17)
N3B—H3N30.889 (19)N3A—H1N30.860 (18)
N3B—H4N30.858 (18)N3A—H2N30.926 (19)
C1B—C5B1.5049 (19)C1A—C5A1.5062 (17)
C1B—C2B1.530 (2)C1A—C2A1.529 (2)
C1B—H1BA0.9900C1A—H1AA0.9900
C1B—H1BB0.9900C1A—H1AB0.9900
C2B—C3B1.533 (2)C2A—C3A1.5300 (18)
C2B—H2BA0.9900C2A—H2AA0.9900
C2B—H2BB0.9900C2A—H2AB0.9900
C3B—C4B1.5427 (19)C3A—C4A1.541 (2)
C3B—H3BA0.9900C3A—H3AA0.9900
C3B—H3BB0.9900C3A—H3AB0.9900
C4B—C5B1.5124 (19)C4A—C5A1.5159 (18)
C4B—H4BA0.9900C4A—H4AA0.9900
C4B—H4BB0.9900C4A—H4AB0.9900
C5B—N1B—N2B116.56 (11)C5A—N1A—N2A116.09 (11)
C6B—N2B—N1B119.17 (11)C6A—N2A—N1A119.94 (11)
C6B—N2B—H2N2116.7 (11)C6A—N2A—H1N2117.2 (12)
N1B—N2B—H2N2124.1 (11)N1A—N2A—H1N2122.9 (12)
C6B—N3B—H3N3118.9 (12)C6A—N3A—H1N3119.9 (12)
C6B—N3B—H4N3120.1 (12)C6A—N3A—H2N3118.1 (10)
H3N3—N3B—H4N3119.6 (16)H1N3—N3A—H2N3121.9 (16)
C5B—C1B—C2B103.70 (12)C5A—C1A—C2A102.33 (11)
C5B—C1B—H1BA111.0C5A—C1A—H1AA111.3
C2B—C1B—H1BA111.0C2A—C1A—H1AA111.3
C5B—C1B—H1BB111.0C5A—C1A—H1AB111.3
C2B—C1B—H1BB111.0C2A—C1A—H1AB111.3
H1BA—C1B—H1BB109.0H1AA—C1A—H1AB109.2
C1B—C2B—C3B103.74 (11)C1A—C2A—C3A103.28 (11)
C1B—C2B—H2BA111.0C1A—C2A—H2AA111.1
C3B—C2B—H2BA111.0C3A—C2A—H2AA111.1
C1B—C2B—H2BB111.0C1A—C2A—H2AB111.1
C3B—C2B—H2BB111.0C3A—C2A—H2AB111.1
H2BA—C2B—H2BB109.0H2AA—C2A—H2AB109.1
C2B—C3B—C4B104.61 (11)C2A—C3A—C4A104.38 (11)
C2B—C3B—H3BA110.8C2A—C3A—H3AA110.9
C4B—C3B—H3BA110.8C4A—C3A—H3AA110.9
C2B—C3B—H3BB110.8C2A—C3A—H3AB110.9
C4B—C3B—H3BB110.8C4A—C3A—H3AB110.9
H3BA—C3B—H3BB108.9H3AA—C3A—H3AB108.9
C5B—C4B—C3B104.26 (11)C5A—C4A—C3A104.26 (10)
C5B—C4B—H4BA110.9C5A—C4A—H4AA110.9
C3B—C4B—H4BA110.9C3A—C4A—H4AA110.9
C5B—C4B—H4BB110.9C5A—C4A—H4AB110.9
C3B—C4B—H4BB110.9C3A—C4A—H4AB110.9
H4BA—C4B—H4BB108.9H4AA—C4A—H4AB108.9
N1B—C5B—C1B121.34 (12)N1A—C5A—C1A121.98 (11)
N1B—C5B—C4B128.67 (13)N1A—C5A—C4A128.40 (12)
C1B—C5B—C4B109.97 (11)C1A—C5A—C4A109.46 (11)
O1B—C6B—N3B122.81 (12)O1A—C6A—N3A122.79 (13)
O1B—C6B—N2B119.30 (12)O1A—C6A—N2A118.98 (11)
N3B—C6B—N2B117.89 (12)N3A—C6A—N2A118.24 (12)
C5B—N1B—N2B—C6B−177.45 (11)C5A—N1A—N2A—C6A172.46 (13)
C5B—C1B—C2B—C3B−34.21 (13)C5A—C1A—C2A—C3A38.89 (14)
C1B—C2B—C3B—C4B36.78 (14)C1A—C2A—C3A—C4A−38.43 (15)
C2B—C3B—C4B—C5B−24.62 (14)C2A—C3A—C4A—C5A22.39 (15)
N2B—N1B—C5B—C1B−177.98 (11)N2A—N1A—C5A—C1A−178.43 (12)
N2B—N1B—C5B—C4B4.09 (19)N2A—N1A—C5A—C4A−3.6 (2)
C2B—C1B—C5B—N1B−158.97 (12)C2A—C1A—C5A—N1A150.21 (13)
C2B—C1B—C5B—C4B19.31 (13)C2A—C1A—C5A—C4A−25.50 (15)
C3B—C4B—C5B—N1B−178.62 (13)C3A—C4A—C5A—N1A−173.30 (14)
C3B—C4B—C5B—C1B3.26 (13)C3A—C4A—C5A—C1A2.06 (15)
N1B—N2B—C6B—O1B−176.11 (11)N1A—N2A—C6A—O1A−175.88 (12)
N1B—N2B—C6B—N3B3.25 (18)N1A—N2A—C6A—N3A3.7 (2)
D—H···AD—HH···AD···AD—H···A
N2A—H1N2···O1B0.875 (17)2.048 (17)2.9088 (14)167.7 (17)
N3A—H1N3···N1Bi0.858 (18)2.614 (18)3.3214 (16)140.5 (16)
N3A—H2N3···O1Aii0.926 (19)1.949 (19)2.8749 (16)178.7 (15)
N2B—H2N2···O1A0.919 (17)2.065 (17)2.9663 (14)166.6 (16)
N3B—H3N3···O1Biii0.889 (19)1.980 (19)2.8682 (16)175.9 (18)
N3B—H4N3···N1Aiv0.858 (17)2.515 (17)3.1771 (16)134.7 (15)
C1A—H1AB···O1Bv0.992.523.3923 (18)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2A—H1N2⋯O1B 0.875 (17)2.048 (17)2.9088 (14)167.7 (17)
N3A—H1N3⋯N1B i 0.858 (18)2.614 (18)3.3214 (16)140.5 (16)
N3A—H2N3⋯O1A ii 0.926 (19)1.949 (19)2.8749 (16)178.7 (15)
N2B—H2N2⋯O1A 0.919 (17)2.065 (17)2.9663 (14)166.6 (16)
N3B—H3N3⋯O1B iii 0.889 (19)1.980 (19)2.8682 (16)175.9 (18)
N3B—H4N3⋯N1A iv 0.858 (17)2.515 (17)3.1771 (16)134.7 (15)
C1A—H1AB⋯O1B v 0.992.523.3923 (18)146

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  9 in total

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Authors:  Hoong-Kun Fun; Tze Shyang Chia; Shridhar Malladi; Arun M Isloor; Kammasandra N Shivananda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08

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