Literature DB >> 21582618

3,3,6,6-Tetra-methyl-9-phenyl-3,4,5,6-tetra-hydro-9H-xanthene-1,8(2H,7H)-dione.

B Palakshi Reddy, V Vijayakumar, T Narasimhamurthy, J Suresh, P L Nilantha Lakshman.   

Abstract

In the title compound, C(23)H(26)O(3), the three six-membered rings of the xanthene system are non-planar, having total puckering amplitudes, Q(T), of 0.443 (2), 0.202 (2) and 0.449 (2) Å. The central ring adopts a boat conformation and the outer rings adopt sofa conformations. The crystal structure is stabilized by van der Waals inter-actions.

Entities:  

Year:  2009        PMID: 21582618      PMCID: PMC2969019          DOI: 10.1107/S1600536809010526

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmaceutical properties of xanthenes, see: Hideo (1981 ▶); Lambert et al. (1997 ▶); Poupelin et al. (1978 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C23H26O3 M = 350.44 Monoclinic, a = 6.0562 (5) Å b = 19.7680 (18) Å c = 16.4325 (13) Å β = 97.924 (3)° V = 1948.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.17 × 0.15 × 0.11 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.987, T max = 0.992 11861 measured reflections 4284 independent reflections 2825 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.138 S = 1.03 4284 reflections 239 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809010526/at2748sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010526/at2748Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H26O3F(000) = 752
Mr = 350.44Dx = 1.195 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2500 reflections
a = 6.0562 (5) Åθ = 2–27°
b = 19.7680 (18) ŵ = 0.08 mm1
c = 16.4325 (13) ÅT = 293 K
β = 97.924 (3)°Needle, colourless
V = 1948.5 (3) Å30.17 × 0.15 × 0.11 mm
Z = 4
Bruker SMART APEX CCD diffractometer4284 independent reflections
Radiation source: fine-focus sealed tube2825 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 27.1°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −5→7
Tmin = 0.987, Tmax = 0.992k = −25→25
11861 measured reflectionsl = −21→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0661P)2 + 0.1411P] where P = (Fo2 + 2Fc2)/3
4284 reflections(Δ/σ)max < 0.001
239 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.2342 (3)0.26716 (7)0.39187 (9)0.0364 (4)
C30.0380 (2)0.27207 (7)0.34340 (9)0.0353 (3)
C4−0.0306 (3)0.22377 (7)0.27309 (9)0.0363 (4)
H4−0.18660.21100.27410.044*
C50.1110 (3)0.16067 (8)0.28674 (9)0.0379 (4)
C60.3004 (3)0.15872 (7)0.33973 (9)0.0390 (4)
C70.3232 (3)0.31533 (8)0.45793 (9)0.0424 (4)
H7A0.48110.32200.45620.051*
H7B0.30680.29560.51080.051*
C80.2064 (3)0.38413 (8)0.45065 (10)0.0450 (4)
C9−0.0457 (3)0.37197 (10)0.43150 (11)0.0544 (5)
H9A−0.09700.35160.47920.065*
H9B−0.11990.41530.42210.065*
C10−0.1139 (3)0.32744 (9)0.35821 (10)0.0447 (4)
C110.0384 (3)0.09875 (8)0.24133 (10)0.0479 (4)
C120.1983 (4)0.03983 (9)0.24839 (11)0.0607 (5)
H12A0.29870.04520.20770.073*
H12B0.1141−0.00140.23550.073*
C130.3369 (3)0.03208 (8)0.33293 (10)0.0497 (4)
C140.4530 (3)0.09951 (8)0.35552 (11)0.0504 (4)
H14A0.51420.09880.41330.060*
H14B0.57610.10480.32400.060*
C15−0.0128 (3)0.25771 (7)0.19070 (9)0.0360 (4)
C160.1833 (3)0.28868 (9)0.17640 (10)0.0457 (4)
H160.30730.28740.21670.055*
C170.1970 (3)0.32159 (9)0.10281 (11)0.0534 (5)
H170.32970.34210.09390.064*
C180.0143 (4)0.32390 (9)0.04283 (11)0.0562 (5)
H180.02280.3465−0.00630.067*
C19−0.1807 (3)0.29273 (10)0.05584 (11)0.0601 (5)
H19−0.30390.29390.01530.072*
C20−0.1939 (3)0.25964 (9)0.12930 (10)0.0495 (4)
H20−0.32610.23840.13750.059*
C210.2861 (3)0.42570 (9)0.38171 (13)0.0613 (5)
H21A0.21370.46900.37830.092*
H21B0.25020.40220.33050.092*
H21C0.44460.43190.39310.092*
C220.2621 (4)0.42158 (12)0.53235 (13)0.0775 (7)
H22A0.42100.42410.54670.116*
H22B0.19900.39770.57450.116*
H22C0.20120.46650.52710.116*
C230.5131 (4)−0.02346 (10)0.32996 (14)0.0785 (7)
H23A0.4405−0.06540.31360.118*
H23B0.5982−0.02850.38340.118*
H23C0.6106−0.01110.29100.118*
C240.1837 (4)0.01311 (11)0.39644 (13)0.0756 (6)
H24A0.1096−0.02880.38080.113*
H24B0.07480.04810.39870.113*
H24C0.27100.00820.44950.113*
O10.37769 (18)0.21342 (5)0.38742 (7)0.0448 (3)
O2−0.2918 (2)0.33452 (7)0.31414 (8)0.0672 (4)
O3−0.1434 (2)0.09604 (6)0.19873 (9)0.0699 (4)
U11U22U33U12U13U23
C20.0412 (9)0.0298 (8)0.0381 (8)0.0020 (7)0.0052 (7)0.0017 (6)
C30.0360 (8)0.0329 (8)0.0367 (8)0.0003 (7)0.0043 (6)−0.0007 (6)
C40.0323 (8)0.0352 (8)0.0397 (8)−0.0005 (7)−0.0007 (6)−0.0004 (6)
C50.0453 (9)0.0316 (8)0.0358 (8)0.0009 (7)0.0018 (7)0.0005 (6)
C60.0431 (9)0.0298 (8)0.0428 (8)0.0002 (7)0.0018 (7)−0.0019 (7)
C70.0490 (10)0.0378 (9)0.0388 (8)−0.0017 (8)−0.0003 (7)−0.0023 (7)
C80.0460 (10)0.0368 (9)0.0524 (10)0.0014 (8)0.0074 (8)−0.0094 (7)
C90.0492 (11)0.0530 (11)0.0636 (11)0.0044 (9)0.0172 (9)−0.0163 (9)
C100.0398 (9)0.0451 (10)0.0501 (9)0.0030 (8)0.0096 (8)−0.0026 (8)
C110.0638 (12)0.0382 (9)0.0386 (9)−0.0004 (8)−0.0042 (8)−0.0007 (7)
C120.0880 (15)0.0391 (10)0.0497 (10)0.0125 (10)−0.0097 (10)−0.0101 (8)
C130.0689 (12)0.0319 (9)0.0455 (9)0.0069 (8)−0.0020 (8)−0.0009 (7)
C140.0518 (10)0.0384 (9)0.0579 (10)0.0084 (8)−0.0028 (8)−0.0019 (8)
C150.0395 (8)0.0305 (8)0.0363 (8)0.0027 (7)−0.0006 (6)−0.0030 (6)
C160.0452 (10)0.0467 (10)0.0440 (9)−0.0038 (8)0.0018 (7)−0.0049 (8)
C170.0653 (12)0.0435 (10)0.0540 (10)−0.0106 (9)0.0178 (9)−0.0038 (8)
C180.0869 (15)0.0412 (10)0.0406 (9)0.0031 (10)0.0093 (9)0.0046 (8)
C190.0665 (13)0.0629 (12)0.0457 (10)0.0049 (11)−0.0113 (9)0.0072 (9)
C200.0447 (10)0.0511 (11)0.0491 (10)−0.0035 (8)−0.0065 (8)0.0037 (8)
C210.0562 (12)0.0397 (10)0.0881 (14)0.0017 (9)0.0101 (10)0.0126 (10)
C220.0799 (16)0.0678 (14)0.0827 (15)0.0012 (12)0.0036 (12)−0.0377 (12)
C230.1014 (17)0.0442 (11)0.0823 (15)0.0268 (12)−0.0138 (13)−0.0109 (10)
C240.0986 (17)0.0577 (13)0.0692 (13)−0.0073 (12)0.0070 (12)0.0173 (10)
O10.0426 (6)0.0322 (6)0.0551 (7)0.0053 (5)−0.0092 (5)−0.0062 (5)
O20.0462 (8)0.0734 (10)0.0784 (9)0.0206 (7)−0.0042 (7)−0.0149 (7)
O30.0744 (10)0.0486 (8)0.0766 (9)−0.0028 (7)−0.0251 (8)−0.0129 (7)
C2—C31.340 (2)C13—C241.536 (3)
C2—O11.3809 (17)C13—C231.536 (3)
C2—C71.488 (2)C14—H14A0.9700
C3—C101.471 (2)C14—H14B0.9700
C3—C41.512 (2)C15—C201.384 (2)
C4—C51.513 (2)C15—C161.385 (2)
C4—C151.528 (2)C16—C171.386 (2)
C4—H40.9800C16—H160.9300
C5—C61.341 (2)C17—C181.377 (3)
C5—C111.469 (2)C17—H170.9300
C6—O11.3788 (18)C18—C191.375 (3)
C6—C141.492 (2)C18—H180.9300
C7—C81.530 (2)C19—C201.385 (2)
C7—H7A0.9700C19—H190.9300
C7—H7B0.9700C20—H200.9300
C8—C221.529 (2)C21—H21A0.9600
C8—C211.531 (2)C21—H21B0.9600
C8—C91.534 (2)C21—H21C0.9600
C9—C101.503 (2)C22—H22A0.9600
C9—H9A0.9700C22—H22B0.9600
C9—H9B0.9700C22—H22C0.9600
C10—O21.221 (2)C23—H23A0.9600
C11—O31.222 (2)C23—H23B0.9600
C11—C121.509 (2)C23—H23C0.9600
C12—C131.529 (2)C24—H24A0.9600
C12—H12A0.9700C24—H24B0.9600
C12—H12B0.9700C24—H24C0.9600
C13—C141.529 (2)
C3—C2—O1122.50 (13)C14—C13—C23109.43 (16)
C3—C2—C7126.13 (14)C24—C13—C23109.54 (17)
O1—C2—C7111.33 (13)C6—C14—C13112.88 (14)
C2—C3—C10118.61 (14)C6—C14—H14A109.0
C2—C3—C4122.44 (13)C13—C14—H14A109.0
C10—C3—C4118.94 (13)C6—C14—H14B109.0
C3—C4—C5108.46 (12)C13—C14—H14B109.0
C3—C4—C15110.74 (12)H14A—C14—H14B107.8
C5—C4—C15112.66 (12)C20—C15—C16118.41 (14)
C3—C4—H4108.3C20—C15—C4120.80 (14)
C5—C4—H4108.3C16—C15—C4120.77 (13)
C15—C4—H4108.3C15—C16—C17120.76 (16)
C6—C5—C11118.38 (14)C15—C16—H16119.6
C6—C5—C4122.44 (13)C17—C16—H16119.6
C11—C5—C4119.17 (14)C18—C17—C16120.09 (17)
C5—C6—O1122.64 (13)C18—C17—H17120.0
C5—C6—C14126.09 (14)C16—C17—H17120.0
O1—C6—C14111.27 (13)C19—C18—C17119.77 (16)
C2—C7—C8113.26 (13)C19—C18—H18120.1
C2—C7—H7A108.9C17—C18—H18120.1
C8—C7—H7A108.9C18—C19—C20120.08 (17)
C2—C7—H7B108.9C18—C19—H19120.0
C8—C7—H7B108.9C20—C19—H19120.0
H7A—C7—H7B107.7C15—C20—C19120.88 (17)
C22—C8—C7108.54 (15)C15—C20—H20119.6
C22—C8—C21109.63 (16)C19—C20—H20119.6
C7—C8—C21110.20 (14)C8—C21—H21A109.5
C22—C8—C9110.41 (15)C8—C21—H21B109.5
C7—C8—C9108.23 (14)H21A—C21—H21B109.5
C21—C8—C9109.80 (15)C8—C21—H21C109.5
C10—C9—C8114.33 (14)H21A—C21—H21C109.5
C10—C9—H9A108.7H21B—C21—H21C109.5
C8—C9—H9A108.7C8—C22—H22A109.5
C10—C9—H9B108.7C8—C22—H22B109.5
C8—C9—H9B108.7H22A—C22—H22B109.5
H9A—C9—H9B107.6C8—C22—H22C109.5
O2—C10—C3120.52 (15)H22A—C22—H22C109.5
O2—C10—C9122.07 (15)H22B—C22—H22C109.5
C3—C10—C9117.34 (15)C13—C23—H23A109.5
O3—C11—C5120.72 (16)C13—C23—H23B109.5
O3—C11—C12121.90 (15)H23A—C23—H23B109.5
C5—C11—C12117.37 (15)C13—C23—H23C109.5
C11—C12—C13114.43 (14)H23A—C23—H23C109.5
C11—C12—H12A108.7H23B—C23—H23C109.5
C13—C12—H12A108.7C13—C24—H24A109.5
C11—C12—H12B108.7C13—C24—H24B109.5
C13—C12—H12B108.7H24A—C24—H24B109.5
H12A—C12—H12B107.6C13—C24—H24C109.5
C12—C13—C14108.04 (14)H24A—C24—H24C109.5
C12—C13—C24109.55 (17)H24B—C24—H24C109.5
C14—C13—C24110.41 (15)C6—O1—C2117.81 (11)
C12—C13—C23109.85 (14)
O1—C2—C3—C10173.83 (13)C6—C5—C11—O3172.63 (16)
C7—C2—C3—C10−3.8 (2)C4—C5—C11—O3−6.6 (2)
O1—C2—C3—C4−7.5 (2)C6—C5—C11—C12−8.5 (2)
C7—C2—C3—C4174.82 (14)C4—C5—C11—C12172.31 (15)
C2—C3—C4—C519.19 (19)O3—C11—C12—C13−145.42 (19)
C10—C3—C4—C5−162.15 (13)C5—C11—C12—C1335.7 (2)
C2—C3—C4—C15−104.92 (16)C11—C12—C13—C14−53.6 (2)
C10—C3—C4—C1573.74 (17)C11—C12—C13—C2466.7 (2)
C3—C4—C5—C6−16.4 (2)C11—C12—C13—C23−172.93 (18)
C15—C4—C5—C6106.60 (16)C5—C6—C14—C13−23.1 (2)
C3—C4—C5—C11162.83 (13)O1—C6—C14—C13156.85 (14)
C15—C4—C5—C11−74.21 (18)C12—C13—C14—C646.2 (2)
C11—C5—C6—O1−177.46 (14)C24—C13—C14—C6−73.61 (19)
C4—C5—C6—O11.7 (2)C23—C13—C14—C6165.75 (16)
C11—C5—C6—C142.4 (2)C3—C4—C15—C20−125.34 (15)
C4—C5—C6—C14−178.36 (15)C5—C4—C15—C20112.98 (16)
C3—C2—C7—C8−17.9 (2)C3—C4—C15—C1653.10 (19)
O1—C2—C7—C8164.25 (13)C5—C4—C15—C16−68.58 (18)
C2—C7—C8—C22164.25 (16)C20—C15—C16—C170.9 (2)
C2—C7—C8—C21−75.68 (18)C4—C15—C16—C17−177.63 (15)
C2—C7—C8—C944.40 (18)C15—C16—C17—C180.1 (3)
C22—C8—C9—C10−172.24 (16)C16—C17—C18—C19−0.8 (3)
C7—C8—C9—C10−53.6 (2)C17—C18—C19—C200.6 (3)
C21—C8—C9—C1066.8 (2)C16—C15—C20—C19−1.1 (2)
C2—C3—C10—O2178.27 (16)C4—C15—C20—C19177.38 (16)
C4—C3—C10—O2−0.4 (2)C18—C19—C20—C150.4 (3)
C2—C3—C10—C9−4.7 (2)C5—C6—O1—C212.5 (2)
C4—C3—C10—C9176.63 (14)C14—C6—O1—C2−167.45 (13)
C8—C9—C10—O2−148.28 (17)C3—C2—O1—C6−9.5 (2)
C8—C9—C10—C334.7 (2)C7—C2—O1—C6168.44 (13)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  10 in total

1.  4a-Hy-droxy-9-(2-meth-oxy-phen-yl)-4,4a,5,6,7,8,9,9a-octa-hydro-3H-xanthene-1,8(2H)-dione.

Authors:  Wan-Sin Loh; Hoong-Kun Fun; B Palakshi Reddy; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04

2.  4a-Hy-droxy-3,3,6,6-tetra-methyl-9-[6-(3,3,6,6-tetra-methyl-1,8-dioxo-2,3,4,5,6,7,8,9-octa-hydro-1H-xanthen-9-yl)pyridin-2-yl]-2,3,4,4a,5,6,7,8,9,9a-deca-hydro-1H-xanthene-1,8-dione ethanol hemisolvate hemihydrate.

Authors:  Shaaban K Mohamed; Antar A Abdelhamid; Ali N Khalilov; Atash V Gurbanov; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12

3.  4a-Hydroxy-9-(4-hydroxyphenyl)-4,4a,5,6,9,9a-hexahydro-3H-xanthene-1,8(2H,7H)-dione.

Authors:  Liying Wang; Weicheng Lu; Yan Yang; Yulin Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

4.  9-(4-Chloro-phen-yl)-4a-hy-droxy-4,4a,5,6,9,9a-hexa-hydro-3H-xanthene-1,8(2H,7H)-dione.

Authors:  Yan Yang; Weicheng Lu; Chaomei Lian; Yulin Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

5.  7-Bromo-9-(2-hy-droxy-4,4-dimethyl-6-oxocyclo-hex-1-en-1-yl)-3,3-dimethyl-2,3,4,9-tetra-hydro-1H-xanthen-1-one.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Antar A Abdelhamid; Phillip E Fanwick; Herman Potgeiter
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-12

6.  10a-Hy-droxy-9-(4-meth-oxy-phen-yl)-3,4,5,6,7,8a,9,10a-octa-hydro-1H-xanthene-1,8(2H)-dione.

Authors:  Hoong-Kun Fun; Chin Wei Ooi; B Palakshi Reddy; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07

7.  9-(2,4-Dinitro-phen-yl)-3,3,6,6-tetra-methyl-3,4,5,6,7,9-hexa-hydro-1H-xanthene-1,8(2H)-dione.

Authors:  N Sureshbabu; V Sughanya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-23

8.  9-(2-Hy-droxy-6-oxocyclo-hex-1-en-1-yl)-2,3,4,9-tetra-hydro-1H-xanthen-1-one.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Antar A Abdelhamid; Aamer Saeed; Ulrich Flörke
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-28

9.  12-(2-Hy-droxy-6-oxo-cyclo-hex-1-en-yl)-9,10-di-hydro-8H-benzo[a]xanthen-11(12H)-one.

Authors:  Mehmet Akkurt; Shaaban K Mohamed; Alan R Kennedy; Antar A Abdelhamid; Gary J Miller; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-09-18

10.  9-(2-Chloro-phen-yl)-4a-hy-droxy-3,4,4a,5,6,7,9,9a-octa-hydro-2H-xanthene-1,8-dione.

Authors:  Qiu-Ling Liu; Xin-Yan Wu; Feng Gao; Dan Bao; Fang-Ming Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-15
  10 in total

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