Literature DB >> 24826146

9-(2-Chloro-phen-yl)-4a-hy-droxy-3,4,4a,5,6,7,9,9a-octa-hydro-2H-xanthene-1,8-dione.

Qiu-Ling Liu1, Xin-Yan Wu1, Feng Gao1, Dan Bao1, Fang-Ming Wang1.   

Abstract

In the title compound, C19H19ClO4, the di-hydro-pyran ring and the cyclo-hexane ring adopt a half-chair conformation and a chair conformation, respectively. The cyclo-hexene ring has an envelope conformation with the central CH2 C atom as the flap. This atom is disordered over two positions [site-occupancy ratio = 0.744 (12):0.256 (12)] above and below the mean plane formed by the other five atoms. In the crystal, O-H⋯O hydrogen bonds between hy-droxy and carbonyl groups link mol-ecules into chains propagating along [001].

Entities:  

Year:  2014        PMID: 24826146      PMCID: PMC3998631          DOI: 10.1107/S1600536814005297

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the background, synthesis and activities of xanthenes, see: Knight & Stephens (1989 ▶); Srividya et al. (1996 ▶); Menchen et al. (2003 ▶); Reddy et al. (2009 ▶); Mehdi et al. (2011 ▶); Altieri et al.(2013 ▶). For related structures, see: Hua et al. (2006 ▶); Yang et al. (2011 ▶).

Experimental

Crystal data

C19H19ClO4 M = 346.79 Monoclinic, a = 15.3099 (13) Å b = 9.2815 (8) Å c = 12.3216 (11) Å β = 110.716 (1)° V = 1637.7 (2) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 291 K 0.25 × 0.23 × 0.18 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.94, T max = 0.96 12319 measured reflections 3207 independent reflections 2208 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.137 S = 1.00 3207 reflections 227 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814005297/xu5775sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814005297/xu5775Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814005297/xu5775Isup3.cml CCDC reference: 990638 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H19ClO4F(000) = 728
Mr = 346.79Dx = 1.406 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2557 reflections
a = 15.3099 (13) Åθ = 2.6–22.6°
b = 9.2815 (8) ŵ = 0.25 mm1
c = 12.3216 (11) ÅT = 291 K
β = 110.716 (1)°Block, colorless
V = 1637.7 (2) Å30.25 × 0.23 × 0.18 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3207 independent reflections
Radiation source: sealed tube2208 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.037
φ and ω scansθmax = 26.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −18→18
Tmin = 0.94, Tmax = 0.96k = −11→11
12319 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0852P)2] where P = (Fo2 + 2Fc2)/3
3207 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.36292 (16)0.6212 (3)0.22858 (19)0.0374 (5)
C20.4586 (2)0.5704 (3)0.3045 (3)0.0679 (9)
H2A0.45190.50380.36180.082*
H2B0.48650.51780.25690.082*
C30.5220 (3)0.6854 (6)0.3646 (6)0.0557 (18)0.744 (12)
H3A0.54050.73630.30750.067*0.744 (12)
H3B0.57780.64410.42110.067*0.744 (12)
C3'0.4986 (10)0.6331 (16)0.4163 (11)0.048 (4)0.256 (12)
H3'A0.56490.62400.43620.058*0.256 (12)
H3'B0.48200.58080.47330.058*0.256 (12)
C40.48086 (16)0.7929 (3)0.4227 (2)0.0474 (7)
H4A0.51850.87980.43800.057*
H4B0.48260.75430.49660.057*
C50.38240 (15)0.8304 (2)0.35106 (17)0.0325 (5)
C60.32588 (14)0.7506 (2)0.26163 (17)0.0304 (5)
C70.22743 (14)0.7965 (2)0.19183 (17)0.0294 (5)
H7A0.22240.79500.11030.035*
C80.21218 (14)0.9542 (2)0.21988 (16)0.0287 (5)
H8A0.14470.96770.19860.034*
C90.24489 (16)1.0626 (3)0.14999 (18)0.0368 (5)
C100.2394 (2)1.2177 (3)0.1799 (2)0.0475 (6)
H10A0.17451.24560.15910.057*
H10B0.26711.27690.13570.057*
C110.29051 (17)1.2435 (3)0.3093 (2)0.0408 (6)
H11A0.35681.22650.32840.049*
H11B0.28221.34290.32780.049*
C120.25337 (16)1.1442 (3)0.38055 (19)0.0374 (6)
H12A0.28981.15780.46210.045*
H12B0.18931.17050.36850.045*
C130.25672 (14)0.9869 (2)0.35002 (17)0.0296 (5)
C140.15332 (15)0.6935 (2)0.20126 (18)0.0308 (5)
C150.06507 (16)0.6870 (2)0.11488 (19)0.0364 (5)
C16−0.00219 (17)0.5888 (3)0.1178 (2)0.0461 (6)
H16A−0.06010.58660.05820.055*
C170.01752 (18)0.4942 (3)0.2097 (2)0.0491 (7)
H17A−0.02680.42680.21190.059*
C180.10288 (18)0.5000 (3)0.2982 (2)0.0450 (6)
H18A0.11570.43780.36110.054*
C190.17003 (16)0.5983 (2)0.29409 (19)0.0364 (5)
H19A0.22750.60070.35450.044*
Cl10.03711 (4)0.80536 (8)−0.00262 (5)0.0547 (2)
O10.35645 (10)0.95441 (16)0.38789 (12)0.0361 (4)
O20.31864 (12)0.55190 (18)0.14146 (13)0.0472 (5)
O30.27329 (14)1.0251 (2)0.07442 (15)0.0588 (5)
O40.21588 (11)0.89704 (16)0.40837 (12)0.0387 (4)
H4O0.24960.89200.47690.058*
U11U22U33U12U13U23
C10.0396 (13)0.0346 (13)0.0383 (12)0.0004 (10)0.0139 (10)−0.0021 (10)
C20.0515 (18)0.0584 (19)0.078 (2)0.0237 (15)0.0032 (15)−0.0164 (16)
C30.028 (2)0.049 (3)0.082 (4)0.0068 (18)0.009 (2)−0.012 (3)
C3'0.036 (7)0.058 (8)0.040 (6)0.010 (6)0.001 (5)0.010 (5)
C40.0312 (13)0.0437 (16)0.0537 (14)0.0042 (11)−0.0020 (11)−0.0068 (12)
C50.0302 (12)0.0337 (13)0.0322 (11)0.0010 (10)0.0093 (9)−0.0022 (9)
C60.0281 (11)0.0311 (12)0.0308 (10)−0.0014 (9)0.0089 (9)−0.0009 (9)
C70.0275 (11)0.0328 (12)0.0254 (10)−0.0014 (9)0.0064 (8)−0.0030 (8)
C80.0258 (11)0.0289 (11)0.0292 (10)−0.0023 (9)0.0070 (8)−0.0001 (9)
C90.0373 (13)0.0400 (14)0.0280 (11)−0.0077 (10)0.0052 (9)0.0007 (9)
C100.0578 (16)0.0362 (14)0.0457 (14)−0.0037 (12)0.0149 (12)0.0069 (11)
C110.0434 (14)0.0301 (13)0.0463 (13)−0.0036 (11)0.0129 (11)−0.0038 (10)
C120.0381 (13)0.0355 (13)0.0388 (12)0.0011 (10)0.0138 (10)−0.0054 (10)
C130.0281 (11)0.0308 (12)0.0298 (10)−0.0006 (9)0.0101 (9)−0.0010 (9)
C140.0290 (11)0.0291 (12)0.0334 (10)−0.0005 (9)0.0098 (9)−0.0080 (9)
C150.0334 (12)0.0380 (14)0.0353 (11)−0.0004 (10)0.0092 (9)−0.0054 (10)
C160.0298 (13)0.0542 (17)0.0524 (14)−0.0094 (12)0.0123 (11)−0.0158 (13)
C170.0439 (15)0.0463 (16)0.0654 (17)−0.0161 (12)0.0298 (13)−0.0139 (13)
C180.0543 (16)0.0380 (15)0.0505 (14)−0.0036 (12)0.0281 (12)−0.0005 (11)
C190.0358 (12)0.0347 (13)0.0381 (12)−0.0038 (10)0.0122 (10)−0.0025 (10)
Cl10.0444 (4)0.0587 (5)0.0442 (4)−0.0027 (3)−0.0052 (3)0.0053 (3)
O10.0286 (8)0.0362 (9)0.0366 (8)0.0016 (7)0.0031 (6)−0.0094 (7)
O20.0585 (11)0.0397 (10)0.0387 (9)0.0032 (8)0.0114 (8)−0.0113 (8)
O30.0818 (14)0.0590 (12)0.0456 (10)−0.0228 (11)0.0348 (10)−0.0083 (9)
O40.0442 (9)0.0397 (10)0.0322 (8)−0.0043 (8)0.0136 (7)0.0019 (7)
C1—O21.229 (3)C8—H8A0.9800
C1—C61.447 (3)C9—O31.210 (3)
C1—C21.509 (3)C9—C101.495 (3)
C2—C3'1.419 (11)C10—C111.526 (3)
C2—C31.456 (5)C10—H10A0.9700
C2—H2A0.9700C10—H10B0.9700
C2—H2B0.9700C11—C121.515 (3)
C3—C41.490 (5)C11—H11A0.9700
C3—H3A0.9700C11—H11B0.9700
C3—H3B0.9700C12—C131.513 (3)
C3—H3'A1.0608C12—H12A0.9700
C3'—C41.514 (13)C12—H12B0.9700
C3'—H3B1.1976C13—O41.386 (2)
C3'—H3'A0.9601C13—O11.461 (2)
C3'—H3'B0.9599C14—C151.395 (3)
C4—C51.494 (3)C14—C191.396 (3)
C4—H4A0.9700C15—C161.385 (3)
C4—H4B0.9700C15—Cl11.746 (2)
C5—O11.348 (3)C16—C171.380 (4)
C5—C61.355 (3)C16—H16A0.9300
C6—C71.509 (3)C17—C181.375 (4)
C7—C141.519 (3)C17—H17A0.9300
C7—C81.541 (3)C18—C191.389 (3)
C7—H7A0.9800C18—H18A0.9300
C8—C91.520 (3)C19—H19A0.9300
C8—C131.535 (3)O4—H4O0.8200
O2—C1—C6122.0 (2)C8—C7—H7A106.3
O2—C1—C2119.5 (2)C9—C8—C13110.33 (17)
C6—C1—C2118.4 (2)C9—C8—C7113.29 (17)
C3'—C2—C339.2 (6)C13—C8—C7112.07 (17)
C3'—C2—C1117.7 (5)C9—C8—H8A106.9
C3—C2—C1114.3 (3)C13—C8—H8A106.9
C3'—C2—H2A71.1C7—C8—H8A106.9
C3—C2—H2A108.7O3—C9—C10122.2 (2)
C1—C2—H2A108.7O3—C9—C8121.7 (2)
C3'—C2—H2B131.5C10—C9—C8116.0 (2)
C3—C2—H2B108.7C9—C10—C11110.9 (2)
C1—C2—H2B108.7C9—C10—H10A109.5
H2A—C2—H2B107.6C11—C10—H10A109.5
C2—C3—C4114.6 (4)C9—C10—H10B109.5
C2—C3—H3A107.5C11—C10—H10B109.5
C4—C3—H3A107.7H10A—C10—H10B108.1
C2—C3—H3B109.5C12—C11—C10110.56 (19)
C4—C3—H3B109.6C12—C11—H11A109.5
H3A—C3—H3B107.6C10—C11—H11A109.5
C2—C3—H3'A97.7C12—C11—H11B109.5
C4—C3—H3'A101.8C10—C11—H11B109.5
H3A—C3—H3'A127.7H11A—C11—H11B108.1
H3B—C3—H3'A20.2C13—C12—C11112.95 (18)
C2—C3'—C4115.4 (8)C13—C12—H12A109.0
C2—C3'—H3B99.5C11—C12—H12A109.0
C4—C3'—H3B96.4C13—C12—H12B109.0
C2—C3'—H3'A105.4C11—C12—H12B109.0
C4—C3'—H3'A105.5H12A—C12—H12B107.8
H3B—C3'—H3'A15.0O4—C13—O1108.80 (16)
C2—C3'—H3'B111.6O4—C13—C12112.99 (17)
C4—C3'—H3'B111.0O1—C13—C12104.07 (16)
H3B—C3'—H3'B122.2O4—C13—C8107.92 (16)
H3'A—C3'—H3'B107.3O1—C13—C8108.71 (16)
C3—C4—C5112.5 (2)C12—C13—C8114.14 (18)
C3—C4—C3'37.4 (5)C15—C14—C19116.4 (2)
C5—C4—C3'111.1 (5)C15—C14—C7121.16 (19)
C3—C4—H4A109.1C19—C14—C7122.39 (19)
C5—C4—H4A109.1C16—C15—C14122.5 (2)
C3'—C4—H4A136.0C16—C15—Cl1117.97 (18)
C3—C4—H4B109.1C14—C15—Cl1119.50 (17)
C5—C4—H4B109.1C17—C16—C15119.4 (2)
C3'—C4—H4B75.0C17—C16—H16A120.3
H4A—C4—H4B107.8C15—C16—H16A120.3
O1—C5—C6124.11 (19)C18—C17—C16119.8 (2)
O1—C5—C4110.88 (18)C18—C17—H17A120.1
C6—C5—C4125.0 (2)C16—C17—H17A120.1
C5—C6—C1118.8 (2)C17—C18—C19120.3 (2)
C5—C6—C7122.1 (2)C17—C18—H18A119.9
C1—C6—C7119.07 (18)C19—C18—H18A119.9
C6—C7—C14113.68 (17)C18—C19—C14121.5 (2)
C6—C7—C8109.90 (16)C18—C19—H19A119.2
C14—C7—C8113.82 (17)C14—C19—H19A119.2
C6—C7—H7A106.3C5—O1—C13117.90 (16)
C14—C7—H7A106.3C13—O4—H4O109.5
O2—C1—C2—C3'−166.3 (10)C7—C8—C9—C10−175.13 (18)
C6—C1—C2—C3'13.3 (10)O3—C9—C10—C11−126.3 (2)
O2—C1—C2—C3150.0 (4)C8—C9—C10—C1153.9 (3)
C6—C1—C2—C3−30.3 (5)C9—C10—C11—C12−55.0 (3)
C3'—C2—C3—C4−57.7 (7)C10—C11—C12—C1354.7 (3)
C1—C2—C3—C446.9 (7)C11—C12—C13—O4−175.08 (17)
C3—C2—C3'—C456.8 (10)C11—C12—C13—O167.1 (2)
C1—C2—C3'—C4−38.5 (17)C11—C12—C13—C8−51.3 (2)
C2—C3—C4—C5−40.4 (7)C9—C8—C13—O4172.60 (17)
C2—C3—C4—C3'55.3 (7)C7—C8—C13—O4−60.2 (2)
C2—C3'—C4—C3−58.2 (10)C9—C8—C13—O1−69.5 (2)
C2—C3'—C4—C541.6 (15)C7—C8—C13—O157.7 (2)
C3—C4—C5—O1−162.2 (4)C9—C8—C13—C1246.1 (2)
C3'—C4—C5—O1157.5 (8)C7—C8—C13—C12173.36 (17)
C3—C4—C5—C618.4 (5)C6—C7—C14—C15−156.35 (19)
C3'—C4—C5—C6−22.0 (9)C8—C7—C14—C1576.8 (2)
O1—C5—C6—C1178.4 (2)C6—C7—C14—C1921.9 (3)
C4—C5—C6—C1−2.2 (3)C8—C7—C14—C19−105.0 (2)
O1—C5—C6—C71.6 (3)C19—C14—C15—C16−2.0 (3)
C4—C5—C6—C7−179.0 (2)C7—C14—C15—C16176.3 (2)
O2—C1—C6—C5−172.6 (2)C19—C14—C15—Cl1178.38 (16)
C2—C1—C6—C57.7 (3)C7—C14—C15—Cl1−3.3 (3)
O2—C1—C6—C74.3 (3)C14—C15—C16—C170.7 (3)
C2—C1—C6—C7−175.3 (2)Cl1—C15—C16—C17−179.66 (19)
C5—C6—C7—C14−116.6 (2)C15—C16—C17—C181.1 (4)
C1—C6—C7—C1466.6 (2)C16—C17—C18—C19−1.5 (4)
C5—C6—C7—C812.3 (3)C17—C18—C19—C140.1 (3)
C1—C6—C7—C8−164.54 (18)C15—C14—C19—C181.6 (3)
C6—C7—C8—C984.2 (2)C7—C14—C19—C18−176.7 (2)
C14—C7—C8—C9−147.02 (17)C6—C5—O1—C1315.9 (3)
C6—C7—C8—C13−41.5 (2)C4—C5—O1—C13−163.57 (18)
C14—C7—C8—C1387.3 (2)O4—C13—O1—C572.7 (2)
C13—C8—C9—O3131.7 (2)C12—C13—O1—C5−166.63 (17)
C7—C8—C9—O35.1 (3)C8—C13—O1—C5−44.6 (2)
C13—C8—C9—C10−48.6 (3)
D—H···AD—HH···AD···AD—H···A
O4—H4O···O2i0.822.002.784 (2)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H4O⋯O2i 0.822.002.784 (2)161

Symmetry code: (i) .

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1.  Crystal structure of 10a-hy-droxy-9-(3-nitro-phen-yl)-3,6-diphenyl-3,4,5,6,7,8a,9,10a-octa-hydro-1H-xanthene-1,8(2H)-dione.

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Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-11-21
  1 in total

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