Literature DB >> 24098239

12-(2-Hy-droxy-6-oxo-cyclo-hex-1-en-yl)-9,10-di-hydro-8H-benzo[a]xanthen-11(12H)-one.

Mehmet Akkurt1, Shaaban K Mohamed, Alan R Kennedy, Antar A Abdelhamid, Gary J Miller, Mustafa R Albayati.   

Abstract

In the xanthenone system of the title compound, C23H20O4, the pyran ring has a maximum deviation of 0.111 (1) Å from planarity and the outer cyclo-hexene ring exhibits a puckered conformation. The three methyl-ene C atoms of the cyclo-hexene ring bonded to the pyran unit are disordered over two sets of sites [occupancies = 0.570 (3) and 0.430 (3)]. In the crystal, mol-ecules are linked by C-H⋯O and O-H⋯O hydrogen bonds, forming a two-dimensional network parallel to (110). A C-H⋯π inter-action occurs between these networks.

Entities:  

Year:  2013        PMID: 24098239      PMCID: PMC3790420          DOI: 10.1107/S1600536813025324

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related xanthenone structures, see: Li et al. (2004 ▶); Abdelhamid et al. (2011 ▶); Mohamed et al. (2011 ▶, 2012 ▶). Reddy et al. (2009 ▶); Çelik et al. (2009 ▶). For the industrial and pharmaceutical significance of xanthenes, see: Zare et al. (2012 ▶); Menchen et al. (2003a ▶,b ▶); Sarma & Baruah, (2005 ▶). For ring conformations, see: Cremer & Pople (1975 ▶) and for standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C23H20O4 M = 360.41 Orthorhombic, a = 14.2855 (15) Å b = 13.7461 (12) Å c = 18.400 (2) Å V = 3613.2 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 123 K 0.20 × 0.18 × 0.16 mm

Data collection

Oxford Diffraction Xcalibur, Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.994, T max = 1.000 17944 measured reflections 4541 independent reflections 3366 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.114 S = 1.04 4541 reflections 258 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813025324/sj5351sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025324/sj5351Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025324/sj5351Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20O4F(000) = 1520
Mr = 360.41Dx = 1.325 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ac 2abCell parameters from 3838 reflections
a = 14.2855 (15) Åθ = 3.0–29.5°
b = 13.7461 (12) ŵ = 0.09 mm1
c = 18.400 (2) ÅT = 123 K
V = 3613.2 (6) Å3Block, colourless
Z = 80.20 × 0.18 × 0.16 mm
Oxford Diffraction Xcalibur, Eos diffractometer4541 independent reflections
Radiation source: Enhance (Mo) X-ray Source3366 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
Detector resolution: 16.0727 pixels mm-1θmax = 29.5°, θmin = 3.0°
ω scansh = −18→18
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −17→17
Tmin = 0.994, Tmax = 1.000l = −16→25
17944 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.037P)2 + 1.8151P] where P = (Fo2 + 2Fc2)/3
4541 reflections(Δ/σ)max = 0.001
258 parametersΔρmax = 0.40 e Å3
8 restraintsΔρmin = −0.25 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
xyzUiso*/UeqOcc. (<1)
O10.03562 (8)0.89828 (7)0.24583 (6)0.0232 (3)
O20.02801 (9)0.61517 (8)0.38998 (6)0.0269 (4)
O30.18481 (8)0.51704 (7)0.29379 (7)0.0245 (3)
O40.22989 (8)0.85224 (7)0.30414 (6)0.0206 (3)
C10.11053 (11)0.75665 (10)0.19287 (8)0.0170 (4)
C20.14830 (11)0.71387 (10)0.12835 (8)0.0190 (4)
C30.18506 (11)0.61770 (11)0.12698 (9)0.0208 (4)
C40.21973 (12)0.57841 (12)0.06413 (9)0.0259 (5)
C50.21989 (12)0.63171 (13)−0.00100 (9)0.0289 (5)
C60.18492 (12)0.72413 (12)−0.00158 (9)0.0279 (5)
C70.14894 (12)0.76802 (11)0.06208 (9)0.0233 (5)
C80.11215 (13)0.86400 (11)0.06150 (9)0.0275 (5)
C90.07720 (12)0.90419 (11)0.12294 (9)0.0264 (5)
C100.07683 (11)0.84974 (11)0.18784 (9)0.0206 (4)
C110.10633 (10)0.70142 (9)0.26465 (8)0.0150 (4)
C120.04078 (10)0.75335 (10)0.31646 (8)0.0173 (4)
C130.00454 (11)0.69966 (11)0.37919 (9)0.0212 (5)
C14−0.06429 (13)0.75053 (13)0.42855 (10)0.0330 (6)
C15−0.04989 (15)0.86009 (13)0.43098 (11)0.0370 (6)
C16−0.05019 (13)0.90186 (12)0.35487 (10)0.0288 (5)
C170.01241 (11)0.84547 (11)0.30557 (9)0.0205 (4)
C180.20297 (10)0.68519 (10)0.29769 (8)0.0145 (4)
C190.23694 (11)0.59364 (10)0.31102 (8)0.0180 (4)
C20B0.3353 (4)0.5759 (6)0.3367 (5)0.0207 (11)0.570 (3)
C21B0.3740 (2)0.66151 (19)0.37967 (17)0.0236 (7)0.570 (3)
C22B0.3603 (5)0.7555 (5)0.3376 (5)0.0214 (11)0.570 (3)
C230.26030 (11)0.76828 (10)0.31416 (8)0.0160 (4)
C22A0.3539 (7)0.7519 (7)0.3496 (7)0.0214 (11)0.430 (3)
C20A0.3268 (6)0.5728 (8)0.3504 (7)0.0207 (11)0.430 (3)
C21A0.3963 (3)0.6529 (3)0.3323 (2)0.0236 (7)0.430 (3)
H3A0.185600.580200.170300.0250*
H60.184700.75980−0.045800.0330*
H40.244100.514100.064600.0310*
H50.244100.60370−0.044300.0350*
H30.2178 (17)0.4587 (17)0.3029 (12)0.060 (7)*
H14A−0.058000.724000.478300.0400*
H14B−0.128700.736600.411600.0400*
H15A−0.100500.890500.459900.0440*
H15B0.010500.874900.454900.0440*
H16A−0.114800.900800.335400.0350*
H16B−0.029100.970400.356500.0350*
H20C0.376000.563600.294200.0250*0.570 (3)
H20D0.336300.517000.367700.0250*0.570 (3)
H21C0.341600.666000.427100.0280*0.570 (3)
H21D0.441600.651300.389100.0280*0.570 (3)
H22C0.379000.811200.368400.0260*0.570 (3)
H22D0.401200.755100.294100.0260*0.570 (3)
H80.112100.900300.017600.0330*
H90.053100.968600.122300.0320*
H110.078800.636000.254400.0180*
H20A0.352000.509000.335000.0250*0.430 (3)
H20B0.315600.570800.403500.0250*0.430 (3)
H21A0.412700.649800.280100.0280*0.430 (3)
H21B0.454200.643600.361000.0280*0.430 (3)
H22A0.346700.758000.402900.0260*0.430 (3)
H22B0.397700.803300.333400.0260*0.430 (3)
U11U22U33U12U13U23
O10.0271 (6)0.0151 (5)0.0274 (6)0.0044 (4)−0.0008 (5)0.0007 (4)
O20.0325 (7)0.0199 (6)0.0284 (6)−0.0053 (5)0.0035 (5)0.0024 (5)
O30.0248 (6)0.0096 (5)0.0392 (7)0.0003 (4)−0.0094 (5)−0.0003 (4)
O40.0222 (6)0.0106 (5)0.0290 (6)−0.0015 (4)0.0001 (5)0.0000 (4)
C10.0156 (7)0.0143 (7)0.0212 (8)−0.0028 (6)−0.0029 (6)0.0018 (6)
C20.0161 (7)0.0197 (7)0.0213 (8)−0.0045 (6)−0.0029 (6)0.0004 (6)
C30.0208 (8)0.0196 (7)0.0220 (8)−0.0029 (6)−0.0009 (7)−0.0006 (6)
C40.0242 (9)0.0240 (8)0.0295 (9)−0.0024 (7)0.0017 (7)−0.0052 (7)
C50.0264 (9)0.0385 (10)0.0219 (8)−0.0062 (7)0.0028 (7)−0.0075 (7)
C60.0267 (9)0.0370 (9)0.0201 (8)−0.0090 (7)−0.0026 (7)0.0037 (7)
C70.0213 (8)0.0263 (8)0.0222 (8)−0.0070 (6)−0.0033 (7)0.0027 (7)
C80.0309 (10)0.0265 (8)0.0251 (9)−0.0054 (7)−0.0053 (8)0.0098 (7)
C90.0290 (9)0.0170 (7)0.0333 (10)−0.0004 (6)−0.0064 (8)0.0069 (7)
C100.0197 (8)0.0173 (7)0.0249 (8)−0.0014 (6)−0.0026 (7)0.0000 (6)
C110.0158 (7)0.0105 (6)0.0186 (7)−0.0009 (5)−0.0010 (6)−0.0002 (5)
C120.0129 (7)0.0171 (7)0.0220 (8)−0.0009 (6)−0.0013 (6)−0.0028 (6)
C130.0168 (8)0.0231 (8)0.0236 (8)−0.0040 (6)−0.0013 (7)−0.0018 (6)
C140.0263 (10)0.0400 (10)0.0326 (10)0.0039 (8)0.0110 (8)0.0010 (8)
C150.0332 (11)0.0389 (10)0.0390 (11)0.0124 (8)0.0068 (9)−0.0085 (8)
C160.0237 (9)0.0242 (8)0.0386 (10)0.0067 (7)0.0018 (8)−0.0061 (7)
C170.0161 (8)0.0192 (7)0.0261 (8)0.0008 (6)−0.0027 (7)−0.0023 (6)
C180.0147 (7)0.0138 (6)0.0150 (7)0.0005 (5)0.0004 (6)−0.0003 (5)
C190.0189 (8)0.0137 (7)0.0213 (8)0.0003 (6)−0.0010 (6)−0.0011 (6)
C20B0.0199 (13)0.0172 (8)0.025 (3)0.0027 (9)−0.0037 (16)0.0015 (15)
C21B0.0171 (12)0.0240 (11)0.0297 (13)0.0017 (9)−0.0052 (11)−0.0040 (12)
C22B0.0152 (11)0.0190 (9)0.030 (3)−0.0042 (9)0.0005 (15)−0.0012 (14)
C230.0166 (7)0.0153 (7)0.0161 (7)−0.0005 (5)0.0026 (6)−0.0006 (6)
C22A0.0152 (11)0.0190 (9)0.030 (3)−0.0042 (9)0.0005 (15)−0.0012 (14)
C20A0.0199 (13)0.0172 (8)0.025 (3)0.0027 (9)−0.0037 (16)0.0015 (15)
C21A0.0171 (12)0.0240 (11)0.0297 (13)0.0017 (9)−0.0052 (11)−0.0040 (12)
O1—C101.3894 (19)C20B—C21B1.522 (9)
O1—C171.3584 (19)C21A—C22A1.523 (11)
O2—C131.2250 (19)C21B—C22B1.519 (8)
O3—C191.3281 (18)C22A—C231.505 (11)
O4—C231.2469 (17)C22B—C231.503 (8)
O3—H30.95 (2)C3—H3A0.9500
C1—C101.370 (2)C4—H40.9500
C1—C111.525 (2)C5—H50.9500
C1—C21.431 (2)C6—H60.9500
C2—C31.423 (2)C8—H80.9500
C2—C71.429 (2)C9—H90.9500
C3—C41.369 (2)C11—H111.0000
C4—C51.405 (2)C14—H14A0.9900
C5—C61.365 (2)C14—H14B0.9900
C6—C71.414 (2)C15—H15A0.9900
C7—C81.420 (2)C15—H15B0.9900
C8—C91.354 (2)C16—H16A0.9900
C9—C101.409 (2)C16—H16B0.9900
C11—C181.525 (2)C20A—H20B0.9900
C11—C121.515 (2)C20A—H20A0.9900
C12—C131.465 (2)C20B—H20D0.9900
C12—C171.345 (2)C20B—H20C0.9900
C13—C141.510 (2)C21A—H21B0.9900
C14—C151.521 (3)C21A—H21A0.9900
C15—C161.514 (3)C21B—H21D0.9900
C16—C171.491 (2)C21B—H21C0.9900
C18—C231.438 (2)C22A—H22B0.9900
C18—C191.371 (2)C22A—H22A0.9900
C19—C20B1.502 (6)C22B—H22D0.9900
C19—C20A1.502 (10)C22B—H22C0.9900
C20A—C21A1.520 (11)
C10—O1—C17117.92 (11)C5—C4—H4120.00
C19—O3—H3110.5 (14)C4—C5—H5120.00
C2—C1—C11121.94 (12)C6—C5—H5120.00
C10—C1—C11120.64 (13)C5—C6—H6119.00
C2—C1—C10117.41 (13)C7—C6—H6119.00
C1—C2—C7119.77 (13)C7—C8—H8120.00
C3—C2—C7117.82 (14)C9—C8—H8120.00
C1—C2—C3122.41 (13)C8—C9—H9120.00
C2—C3—C4121.00 (15)C10—C9—H9120.00
C3—C4—C5121.03 (15)C1—C11—H11107.00
C4—C5—C6119.44 (15)C12—C11—H11107.00
C5—C6—C7121.57 (15)C18—C11—H11107.00
C2—C7—C6119.14 (14)C13—C14—H14A109.00
C6—C7—C8121.64 (15)C13—C14—H14B109.00
C2—C7—C8119.21 (14)C15—C14—H14A109.00
C7—C8—C9120.62 (15)C15—C14—H14B109.00
C8—C9—C10119.49 (14)H14A—C14—H14B108.00
O1—C10—C9113.41 (13)C14—C15—H15A110.00
C1—C10—C9123.49 (15)C14—C15—H15B110.00
O1—C10—C1123.06 (14)C16—C15—H15A110.00
C1—C11—C18112.50 (12)C16—C15—H15B110.00
C12—C11—C18112.19 (12)H15A—C15—H15B108.00
C1—C11—C12109.56 (11)C15—C16—H16A109.00
C11—C12—C17122.43 (13)C15—C16—H16B109.00
C13—C12—C17119.04 (14)C17—C16—H16A109.00
C11—C12—C13118.49 (12)C17—C16—H16B109.00
O2—C13—C14121.31 (15)H16A—C16—H16B108.00
C12—C13—C14118.09 (13)C19—C20A—H20A110.00
O2—C13—C12120.58 (14)C19—C20A—H20B110.00
C13—C14—C15112.84 (15)C21A—C20A—H20A110.00
C14—C15—C16110.37 (15)C21A—C20A—H20B110.00
C15—C16—C17111.34 (15)H20A—C20A—H20B108.00
O1—C17—C16111.15 (13)H20C—C20B—H20D108.00
C12—C17—C16125.43 (15)C19—C20B—H20D109.00
O1—C17—C12123.39 (14)C21B—C20B—H20C109.00
C11—C18—C19121.74 (13)C19—C20B—H20C109.00
C19—C18—C23119.33 (13)C21B—C20B—H20D109.00
C11—C18—C23118.92 (12)C20A—C21A—H21B110.00
O3—C19—C18119.12 (14)C22A—C21A—H21A110.00
O3—C19—C20A116.3 (4)C20A—C21A—H21A110.00
C18—C19—C20B122.4 (3)H21A—C21A—H21B108.00
C18—C19—C20A124.3 (4)C22A—C21A—H21B110.00
O3—C19—C20B118.1 (3)C20B—C21B—H21D110.00
C19—C20A—C21A108.3 (7)C20B—C21B—H21C110.00
C19—C20B—C21B112.2 (5)H21C—C21B—H21D108.00
C20A—C21A—C22A110.0 (6)C22B—C21B—H21C110.00
C20B—C21B—C22B110.3 (5)C22B—C21B—H21D110.00
C21A—C22A—C23113.4 (7)C23—C22A—H22B109.00
C21B—C22B—C23111.6 (5)H22A—C22A—H22B108.00
C18—C23—C22A118.6 (4)C21A—C22A—H22A109.00
O4—C23—C22A120.8 (4)C21A—C22A—H22B109.00
C18—C23—C22B120.6 (3)C23—C22A—H22A109.00
O4—C23—C18120.38 (14)C21B—C22B—H22C109.00
O4—C23—C22B118.8 (3)C21B—C22B—H22D109.00
C2—C3—H3A120.00C23—C22B—H22C109.00
C4—C3—H3A119.00C23—C22B—H22D109.00
C3—C4—H4119.00H22C—C22B—H22D108.00
C17—O1—C10—C1−12.4 (2)C18—C11—C12—C13−72.26 (16)
C17—O1—C10—C9165.31 (14)C18—C11—C12—C17110.02 (16)
C10—O1—C17—C1211.4 (2)C1—C11—C18—C19−120.34 (15)
C10—O1—C17—C16−166.72 (13)C1—C11—C18—C2358.68 (17)
C10—C1—C2—C3−179.85 (14)C12—C11—C18—C19115.59 (15)
C10—C1—C2—C7−0.5 (2)C12—C11—C18—C23−65.40 (17)
C11—C1—C2—C3−0.6 (2)C11—C12—C13—O21.1 (2)
C11—C1—C2—C7178.76 (14)C11—C12—C13—C14−177.18 (14)
C2—C1—C10—O1177.82 (14)C17—C12—C13—O2178.93 (15)
C2—C1—C10—C90.4 (2)C17—C12—C13—C140.6 (2)
C11—C1—C10—O1−1.5 (2)C11—C12—C17—O13.6 (2)
C11—C1—C10—C9−178.93 (15)C11—C12—C17—C16−178.61 (15)
C2—C1—C11—C12−164.88 (14)C13—C12—C17—O1−174.15 (14)
C2—C1—C11—C1869.61 (17)C13—C12—C17—C163.7 (2)
C10—C1—C11—C1214.38 (19)O2—C13—C14—C15152.03 (16)
C10—C1—C11—C18−111.14 (16)C12—C13—C14—C15−29.7 (2)
C1—C2—C3—C4179.23 (15)C13—C14—C15—C1653.5 (2)
C7—C2—C3—C4−0.1 (2)C14—C15—C16—C17−48.5 (2)
C1—C2—C7—C6−178.84 (15)C15—C16—C17—O1−160.62 (14)
C1—C2—C7—C80.2 (2)C15—C16—C17—C1221.3 (2)
C3—C2—C7—C60.5 (2)C11—C18—C19—O30.9 (2)
C3—C2—C7—C8179.57 (15)C11—C18—C19—C20B173.9 (4)
C2—C3—C4—C5−0.2 (2)C23—C18—C19—O3−178.09 (14)
C3—C4—C5—C60.0 (3)C23—C18—C19—C20B−5.1 (5)
C4—C5—C6—C70.4 (3)C11—C18—C23—O42.7 (2)
C5—C6—C7—C2−0.7 (3)C11—C18—C23—C22B−172.0 (4)
C5—C6—C7—C8−179.71 (17)C19—C18—C23—O4−178.22 (14)
C2—C7—C8—C90.3 (3)C19—C18—C23—C22B7.0 (4)
C6—C7—C8—C9179.32 (17)O3—C19—C20B—C21B−159.1 (4)
C7—C8—C9—C10−0.5 (3)C18—C19—C20B—C21B27.9 (7)
C8—C9—C10—O1−177.54 (15)C19—C20B—C21B—C22B−50.8 (7)
C8—C9—C10—C10.1 (3)C20B—C21B—C22B—C2352.4 (6)
C1—C11—C12—C13162.05 (13)C21B—C22B—C23—O4153.7 (4)
C1—C11—C12—C17−15.67 (19)C21B—C22B—C23—C18−31.5 (7)
D—H···AD—HH···AD···AD—H···A
O3—H3···O4i0.95 (2)1.64 (2)2.5793 (15)170 (2)
C3—H3A···O30.952.433.367 (2)168
C9—H9···O2ii0.952.343.275 (2)170
C11—H11···O31.002.342.8228 (17)108
C14—H14B···Cg3iii0.992.853.750 (2)152
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C2–C7 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O4i 0.95 (2)1.64 (2)2.5793 (15)170 (2)
C3—H3A⋯O30.952.433.367 (2)168
C9—H9⋯O2ii 0.952.343.275 (2)170
C14—H14BCg3iii 0.992.853.750 (2)152

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  George M Sheldrick
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Authors:  Shaaban K Mohamed; Antar A Abdelhamid; Ali N Khalilov; Atash V Gurbanov; Seik Weng Ng
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Authors:  Antar A Abdelhamid; Shaaban Kamel Mohamed; Mirze A Allahverdiyev; Atash V Gurbanov; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  12-(3,4,5-Tri-meth-oxy-phen-yl)-2,3,4,12-tetra-hydro-1H-5-oxa-tetra-phen-1-one: crystal structure and Hirshfeld surface analysis.

Authors:  Mukesh M Jotani; P Iniyavan; V Vijayakumar; S Sarveswari; Yee Seng Tan; Edward R T Tiekink
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