Literature DB >> 21522746

4a-Hy-droxy-9-(2-meth-oxy-phen-yl)-4,4a,5,6,7,8,9,9a-octa-hydro-3H-xanthene-1,8(2H)-dione.

Wan-Sin Loh, Hoong-Kun Fun, B Palakshi Reddy, V Vijayakumar, S Sarveswari.   

Abstract

In the title compound, C(20)H(22)O(5), an S(6) ring motif is formed by an intra-molecular C-H⋯O hydrogen bond, which contributes to the stabilization of the mol-ecule. In the xanthene system, the cyclo-hexane ring adopts a chair conformation, the cyclo-hexene ring adopts a half-boat conformation and the tetra-hydro-pyran ring adopts a half-chair conformation. The mean plane of the four essentially planar atoms of the tetra-hydro-pyran ring [r.m.s deviation = 0.092 (1) Å] forms a dihedral angle of 64.13 (6)° with the mean plane of the meth-oxy-phenyl group. In the crystal, inter-molecular O-H⋯O and weak C-H⋯O hydrogen bonds link mol-ecules into chains along the a axis, which are further stabilized by C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21522746      PMCID: PMC3050262          DOI: 10.1107/S1600536810050191

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and the biological activity of xanthenes and their derivatives, see: Menchen et al. (2003 ▶); Saint-Ruf et al. (1972 ▶); Ion et al. (1998 ▶); Knight & Stephens (1989 ▶); Jonathan et al. (1988 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For a related structure, see: Reddy et al. (2009 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H22O5 M = 342.38 Triclinic, a = 7.1060 (1) Å b = 7.8897 (1) Å c = 15.1001 (2) Å α = 91.285 (1)° β = 101.251 (1)° γ = 101.129 (1)° V = 813.10 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.44 × 0.23 × 0.10 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009) ▶ T min = 0.957, T max = 0.990 21213 measured reflections 4715 independent reflections 4132 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.110 S = 1.05 4715 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.46 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008) ▶; program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810050191/lh5179sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050191/lh5179Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22O5Z = 2
Mr = 342.38F(000) = 364
Triclinic, P1Dx = 1.398 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1060 (1) ÅCell parameters from 9956 reflections
b = 7.8897 (1) Åθ = 2.6–37.2°
c = 15.1001 (2) ŵ = 0.10 mm1
α = 91.285 (1)°T = 100 K
β = 101.251 (1)°Block, colourless
γ = 101.129 (1)°0.44 × 0.23 × 0.10 mm
V = 813.10 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer4715 independent reflections
Radiation source: fine-focus sealed tube4132 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 30.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.957, Tmax = 0.990k = −11→11
21213 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.057P)2 + 0.3385P] where P = (Fo2 + 2Fc2)/3
4715 reflections(Δ/σ)max < 0.001
231 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.25 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.99328 (11)0.05712 (9)0.14023 (5)0.01184 (15)
O20.70333 (12)0.35590 (10)0.19525 (6)0.01849 (17)
O30.34225 (11)−0.15228 (10)0.17249 (5)0.01475 (16)
O40.74431 (12)0.15152 (9)0.43898 (5)0.01407 (16)
O51.11520 (11)−0.03057 (9)0.28104 (5)0.01311 (15)
C11.06767 (15)0.11229 (12)0.23546 (6)0.01072 (18)
C21.24660 (15)0.25412 (13)0.23649 (7)0.01350 (19)
H2A1.33400.21040.20390.016*
H2B1.31580.28350.29860.016*
C31.19583 (16)0.41749 (13)0.19413 (7)0.0163 (2)
H3A1.14380.39270.12980.020*
H3B1.31370.50660.20150.020*
C41.04414 (17)0.48393 (13)0.23831 (8)0.0172 (2)
H4A1.10050.52080.30120.021*
H4B1.00640.58250.20750.021*
C50.86650 (16)0.34065 (13)0.23232 (7)0.01310 (19)
C60.90683 (15)0.17311 (12)0.27485 (6)0.01074 (18)
H6A0.95700.20010.33980.013*
C70.71877 (15)0.03250 (12)0.26338 (6)0.01037 (18)
H7A0.61120.09330.26440.012*
C80.67731 (15)−0.05984 (12)0.17062 (6)0.01066 (18)
C90.47820 (15)−0.15295 (12)0.13264 (6)0.01103 (18)
C100.43704 (15)−0.24679 (13)0.04013 (7)0.01356 (19)
H10A0.3871−0.1725−0.00520.016*
H10B0.3363−0.34990.03830.016*
C110.61838 (16)−0.29864 (13)0.01678 (7)0.01432 (19)
H11A0.6579−0.38630.05630.017*
H11B0.5882−0.3473−0.04510.017*
C120.78507 (16)−0.14125 (13)0.02780 (7)0.01329 (19)
H12A0.9051−0.17810.02240.016*
H12B0.7561−0.0643−0.02000.016*
C130.81329 (15)−0.04614 (12)0.11791 (6)0.01064 (18)
C140.71718 (14)−0.09100 (12)0.33983 (6)0.01062 (18)
C150.72872 (15)−0.02412 (12)0.42848 (7)0.01140 (18)
C160.72200 (16)−0.13289 (13)0.49996 (7)0.01399 (19)
H16A0.7337−0.08690.55850.017*
C170.69757 (16)−0.31127 (13)0.48290 (7)0.0150 (2)
H17A0.6903−0.38440.53010.018*
C180.68398 (16)−0.38035 (13)0.39597 (7)0.0146 (2)
H18A0.6674−0.49920.38470.018*
C190.69553 (15)−0.26938 (13)0.32551 (7)0.01285 (19)
H19A0.6886−0.31580.26750.015*
C200.79471 (17)0.22709 (13)0.52994 (7)0.0154 (2)
H20A0.82510.35090.52890.023*
H20B0.90660.18750.56250.023*
H20C0.68610.19340.55930.023*
H1O51.201 (3)−0.067 (2)0.2552 (12)0.027 (4)*
U11U22U33U12U13U23
O10.0112 (3)0.0143 (3)0.0096 (3)−0.0001 (3)0.0038 (3)−0.0002 (2)
O20.0168 (4)0.0169 (4)0.0226 (4)0.0053 (3)0.0039 (3)0.0048 (3)
O30.0130 (4)0.0158 (3)0.0160 (3)0.0021 (3)0.0054 (3)−0.0011 (3)
O40.0207 (4)0.0119 (3)0.0100 (3)0.0039 (3)0.0036 (3)−0.0005 (2)
O50.0144 (4)0.0141 (3)0.0132 (3)0.0058 (3)0.0053 (3)0.0034 (3)
C10.0112 (4)0.0117 (4)0.0091 (4)0.0014 (3)0.0027 (3)0.0007 (3)
C20.0111 (4)0.0148 (4)0.0141 (4)−0.0001 (4)0.0041 (3)0.0004 (3)
C30.0160 (5)0.0134 (4)0.0194 (5)−0.0004 (4)0.0065 (4)0.0020 (3)
C40.0175 (5)0.0116 (4)0.0229 (5)0.0006 (4)0.0076 (4)0.0002 (4)
C50.0158 (5)0.0115 (4)0.0129 (4)0.0022 (4)0.0058 (4)0.0000 (3)
C60.0114 (4)0.0110 (4)0.0098 (4)0.0015 (3)0.0030 (3)0.0000 (3)
C70.0110 (4)0.0109 (4)0.0093 (4)0.0018 (3)0.0026 (3)0.0003 (3)
C80.0119 (4)0.0099 (4)0.0099 (4)0.0019 (3)0.0021 (3)0.0003 (3)
C90.0125 (4)0.0097 (4)0.0112 (4)0.0026 (3)0.0029 (3)0.0014 (3)
C100.0132 (5)0.0143 (4)0.0122 (4)0.0009 (4)0.0025 (4)−0.0024 (3)
C110.0161 (5)0.0126 (4)0.0140 (4)0.0012 (4)0.0044 (4)−0.0025 (3)
C120.0156 (5)0.0137 (4)0.0108 (4)0.0014 (4)0.0052 (4)−0.0016 (3)
C130.0119 (4)0.0098 (4)0.0099 (4)0.0016 (3)0.0021 (3)0.0010 (3)
C140.0098 (4)0.0121 (4)0.0100 (4)0.0017 (3)0.0027 (3)0.0014 (3)
C150.0106 (4)0.0121 (4)0.0118 (4)0.0021 (3)0.0032 (3)0.0004 (3)
C160.0155 (5)0.0157 (4)0.0109 (4)0.0028 (4)0.0035 (4)0.0014 (3)
C170.0162 (5)0.0153 (4)0.0139 (4)0.0025 (4)0.0039 (4)0.0046 (3)
C180.0159 (5)0.0119 (4)0.0155 (4)0.0020 (4)0.0026 (4)0.0017 (3)
C190.0130 (5)0.0130 (4)0.0122 (4)0.0022 (4)0.0022 (3)−0.0003 (3)
C200.0189 (5)0.0158 (4)0.0112 (4)0.0043 (4)0.0020 (4)−0.0025 (3)
O1—C131.3529 (12)C8—C131.3574 (14)
O1—C11.4570 (11)C8—C91.4607 (14)
O2—C51.2148 (13)C9—C101.5151 (13)
O3—C91.2345 (12)C10—C111.5253 (15)
O4—C151.3718 (12)C10—H10A0.9700
O4—C201.4350 (12)C10—H10B0.9700
O5—C11.3962 (11)C11—C121.5227 (14)
O5—H1O50.874 (18)C11—H11A0.9700
C1—C21.5203 (14)C11—H11B0.9700
C1—C61.5345 (14)C12—C131.4982 (13)
C2—C31.5255 (14)C12—H12A0.9700
C2—H2A0.9700C12—H12B0.9700
C2—H2B0.9700C14—C191.3931 (13)
C3—C41.5378 (16)C14—C151.4091 (13)
C3—H3A0.9700C15—C161.3964 (13)
C3—H3B0.9700C16—C171.3961 (14)
C4—C51.5098 (15)C16—H16A0.9300
C4—H4A0.9700C17—C181.3884 (14)
C4—H4B0.9700C17—H17A0.9300
C5—C61.5344 (13)C18—C191.3976 (14)
C6—C71.5412 (14)C18—H18A0.9300
C6—H6A0.9800C19—H19A0.9300
C7—C81.5133 (13)C20—H20A0.9600
C7—C141.5276 (13)C20—H20B0.9600
C7—H7A0.9800C20—H20C0.9600
C13—O1—C1117.22 (7)C8—C9—C10118.74 (9)
C15—O4—C20116.87 (8)C9—C10—C11112.70 (8)
C1—O5—H1O5106.7 (11)C9—C10—H10A109.1
O5—C1—O1107.99 (7)C11—C10—H10A109.1
O5—C1—C2112.32 (8)C9—C10—H10B109.1
O1—C1—C2104.81 (7)C11—C10—H10B109.1
O5—C1—C6108.38 (8)H10A—C10—H10B107.8
O1—C1—C6109.47 (8)C12—C11—C10110.02 (8)
C2—C1—C6113.68 (8)C12—C11—H11A109.7
C1—C2—C3113.12 (9)C10—C11—H11A109.7
C1—C2—H2A109.0C12—C11—H11B109.7
C3—C2—H2A109.0C10—C11—H11B109.7
C1—C2—H2B109.0H11A—C11—H11B108.2
C3—C2—H2B109.0C13—C12—C11110.92 (8)
H2A—C2—H2B107.8C13—C12—H12A109.5
C2—C3—C4111.06 (9)C11—C12—H12A109.5
C2—C3—H3A109.4C13—C12—H12B109.5
C4—C3—H3A109.4C11—C12—H12B109.5
C2—C3—H3B109.4H12A—C12—H12B108.0
C4—C3—H3B109.4O1—C13—C8123.96 (9)
H3A—C3—H3B108.0O1—C13—C12111.00 (8)
C5—C4—C3109.20 (8)C8—C13—C12125.03 (9)
C5—C4—H4A109.8C19—C14—C15117.89 (9)
C3—C4—H4A109.8C19—C14—C7122.94 (8)
C5—C4—H4B109.8C15—C14—C7119.10 (8)
C3—C4—H4B109.8O4—C15—C16123.04 (9)
H4A—C4—H4B108.3O4—C15—C14115.90 (8)
O2—C5—C4122.38 (9)C16—C15—C14121.05 (9)
O2—C5—C6122.26 (9)C17—C16—C15119.48 (9)
C4—C5—C6115.35 (9)C17—C16—H16A120.3
C5—C6—C1109.28 (8)C15—C16—H16A120.3
C5—C6—C7111.86 (8)C18—C17—C16120.50 (9)
C1—C6—C7112.48 (8)C18—C17—H17A119.8
C5—C6—H6A107.7C16—C17—H17A119.8
C1—C6—H6A107.7C17—C18—C19119.31 (9)
C7—C6—H6A107.7C17—C18—H18A120.3
C8—C7—C14113.17 (8)C19—C18—H18A120.3
C8—C7—C6109.55 (8)C14—C19—C18121.74 (9)
C14—C7—C6114.28 (8)C14—C19—H19A119.1
C8—C7—H7A106.4C18—C19—H19A119.1
C14—C7—H7A106.4O4—C20—H20A109.5
C6—C7—H7A106.4O4—C20—H20B109.5
C13—C8—C9118.53 (9)H20A—C20—H20B109.5
C13—C8—C7122.45 (9)O4—C20—H20C109.5
C9—C8—C7118.73 (8)H20A—C20—H20C109.5
O3—C9—C8121.80 (9)H20B—C20—H20C109.5
O3—C9—C10119.41 (9)
C13—O1—C1—O571.99 (10)C7—C8—C9—C10−179.45 (8)
C13—O1—C1—C2−168.09 (8)O3—C9—C10—C11−156.92 (9)
C13—O1—C1—C6−45.81 (10)C8—C9—C10—C1125.45 (12)
O5—C1—C2—C3−175.06 (8)C9—C10—C11—C12−53.49 (11)
O1—C1—C2—C367.95 (10)C10—C11—C12—C1350.03 (11)
C6—C1—C2—C3−51.54 (11)C1—O1—C13—C820.22 (13)
C1—C2—C3—C454.04 (11)C1—O1—C13—C12−160.09 (8)
C2—C3—C4—C5−55.21 (12)C9—C8—C13—O1169.98 (8)
C3—C4—C5—O2−122.06 (11)C7—C8—C13—O1−3.74 (15)
C3—C4—C5—C656.91 (11)C9—C8—C13—C12−9.66 (14)
O2—C5—C6—C1125.76 (10)C7—C8—C13—C12176.62 (9)
C4—C5—C6—C1−53.20 (11)C11—C12—C13—O1160.59 (8)
O2—C5—C6—C70.54 (13)C11—C12—C13—C8−19.73 (13)
C4—C5—C6—C7−178.43 (8)C8—C7—C14—C194.92 (14)
O5—C1—C6—C5174.47 (8)C6—C7—C14—C19−121.40 (10)
O1—C1—C6—C5−67.98 (10)C8—C7—C14—C15−171.98 (9)
C2—C1—C6—C548.83 (11)C6—C7—C14—C1561.70 (12)
O5—C1—C6—C7−60.66 (10)C20—O4—C15—C1612.66 (14)
O1—C1—C6—C756.89 (10)C20—O4—C15—C14−168.10 (9)
C2—C1—C6—C7173.70 (8)C19—C14—C15—O4−178.20 (9)
C5—C6—C7—C882.61 (9)C7—C14—C15—O4−1.14 (14)
C1—C6—C7—C8−40.82 (10)C19—C14—C15—C161.06 (15)
C5—C6—C7—C14−149.21 (8)C7—C14—C15—C16178.12 (9)
C1—C6—C7—C1487.36 (10)O4—C15—C16—C17177.27 (10)
C14—C7—C8—C13−114.03 (10)C14—C15—C16—C17−1.94 (16)
C6—C7—C8—C1314.77 (12)C15—C16—C17—C181.30 (16)
C14—C7—C8—C972.27 (11)C16—C17—C18—C190.17 (16)
C6—C7—C8—C9−158.94 (8)C15—C14—C19—C180.46 (15)
C13—C8—C9—O3−170.97 (9)C7—C14—C19—C18−176.48 (9)
C7—C8—C9—O32.98 (14)C17—C18—C19—C14−1.07 (16)
C13—C8—C9—C106.60 (13)
Cg1 is the centroid of the C14–C19 ring.
D—H···AD—HH···AD···AD—H···A
O5—H1O5···O3i0.87 (2)1.93 (2)2.7877 (11)166.3 (18)
C6—H6A···O40.982.322.9266 (12)120
C16—H16A···O5ii0.932.533.4172 (13)160
C20—H20B···Cg1ii0.962.673.5206 (13)147
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C14–C19 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H1O5⋯O3i0.87 (2)1.93 (2)2.7877 (11)166.3 (18)
C6—H6A⋯O40.982.322.9266 (12)120
C16—H16A⋯O5ii0.932.533.4172 (13)160
C20—H20BCg1ii0.962.673.5206 (13)147

Symmetry codes: (i) ; (ii) .

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2.  10a-Hy-droxy-9-(4-meth-oxy-phen-yl)-3,4,5,6,7,8a,9,10a-octa-hydro-1H-xanthene-1,8(2H)-dione.

Authors:  Hoong-Kun Fun; Chin Wei Ooi; B Palakshi Reddy; V Vijayakumar; S Sarveswari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-07
  2 in total

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