Literature DB >> 22058985

9-(4-Chloro-phen-yl)-4a-hy-droxy-4,4a,5,6,9,9a-hexa-hydro-3H-xanthene-1,8(2H,7H)-dione.

Yan Yang1, Weicheng Lu, Chaomei Lian, Yulin Zhu.   

Abstract

In the title compound, C(19)H(19)ClO(4), the central fused ring and the attached cyclo-hexene ring adopt envelope conformations, while the cyclo-hexane ring adopts a chair conformation. The crystal packing is stabilized by O-H⋯O hydrogen bonds, which link the mol-ecules into a chain along the b axis. Weak C-H⋯O bonds also occur.

Entities:  

Year:  2011        PMID: 22058985      PMCID: PMC3200887          DOI: 10.1107/S1600536811031977

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bilogical activity of xanthenes, see: Srividya et al. (1996 ▶); Wang et al., (2006 ▶); Kantevari et al. (2006 ▶); Reddy et al. (2009 ▶); Mehdi et al. (2011 ▶); Mo et al. (2010 ▶). For the synthesis of related compounds, see: Karade et al. (2007 ▶); Luna et al. (2009 ▶).

Experimental

Crystal data

C19H19ClO4 M = 346.79 Monoclinic, a = 25.076 (3) Å b = 12.7715 (13) Å c = 11.3825 (11) Å β = 110.307 (1)° V = 3418.7 (6) Å3 Z = 8 Mo Kα radiation μ = 0.24 mm−1 T = 298 K 0.30 × 0.15 × 0.15 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.931, T max = 0.965 8674 measured reflections 3095 independent reflections 1984 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.111 S = 1.02 3095 reflections 219 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811031977/aa2018sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811031977/aa2018Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811031977/aa2018Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19ClO4F(000) = 1456
Mr = 346.79Dx = 1.348 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1769 reflections
a = 25.076 (3) Åθ = 2.4–20.3°
b = 12.7715 (13) ŵ = 0.24 mm1
c = 11.3825 (11) ÅT = 298 K
β = 110.307 (1)°Block, colourless
V = 3418.7 (6) Å30.30 × 0.15 × 0.15 mm
Z = 8
Bruker APEXII area-detector diffractometer3095 independent reflections
Radiation source: fine-focus sealed tube1984 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 25.3°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −30→30
Tmin = 0.931, Tmax = 0.965k = −10→15
8674 measured reflectionsl = −13→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H-atom parameters constrained
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0479P)2 + 0.6651P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3095 reflectionsΔρmax = 0.17 e Å3
219 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0007 (2)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.44721 (4)0.02958 (6)0.34171 (8)0.1002 (3)
O40.31880 (6)0.64755 (11)0.14155 (12)0.0466 (4)
C90.34321 (8)0.45993 (15)0.29866 (18)0.0396 (5)
H70.32920.46760.36860.048*
C10.42884 (9)0.56223 (17)0.4411 (2)0.0497 (6)
C8A0.29282 (8)0.47462 (17)0.17790 (19)0.0423 (5)
C100.36998 (8)0.35209 (16)0.30869 (18)0.0396 (5)
C9A0.38633 (8)0.54699 (15)0.30970 (18)0.0406 (5)
H80.40750.52980.25430.049*
C4B0.28472 (8)0.56314 (18)0.10889 (19)0.0428 (5)
C150.39198 (10)0.31582 (18)0.2212 (2)0.0536 (6)
H40.39030.35830.15370.064*
C40.39848 (10)0.73910 (18)0.2721 (2)0.0558 (6)
H12A0.37770.80400.24560.067*
H12B0.41800.72330.21410.067*
C130.41858 (10)0.15508 (18)0.3296 (2)0.0576 (7)
C50.23679 (9)0.58061 (19)−0.0116 (2)0.0554 (6)
H17A0.25040.6202−0.06830.066*
H17B0.20730.62130.00410.066*
C80.24755 (9)0.39807 (19)0.1437 (2)0.0517 (6)
C110.37342 (10)0.28731 (19)0.4084 (2)0.0541 (6)
H60.35930.31040.46950.065*
C120.39749 (10)0.1886 (2)0.4188 (2)0.0616 (7)
H10.39930.14550.48600.074*
C20.47120 (10)0.64849 (19)0.4547 (3)0.0695 (8)
H10A0.49640.62970.40990.083*
H10B0.49410.65680.54250.083*
C30.44180 (10)0.75218 (19)0.4037 (2)0.0687 (8)
H11A0.42280.77830.45890.082*
H11B0.47010.80340.40200.082*
C140.41648 (11)0.2179 (2)0.2313 (2)0.0613 (7)
H30.43140.19500.17150.074*
C70.19886 (10)0.4081 (2)0.0210 (2)0.0743 (8)
H15A0.18900.3390−0.01550.089*
H15B0.16600.43580.03700.089*
C60.21224 (11)0.4780 (2)−0.0717 (2)0.0720 (8)
H16A0.17780.4910−0.14260.086*
H16B0.23930.4433−0.10240.086*
O10.42757 (7)0.50975 (13)0.52877 (15)0.0629 (5)
O20.32669 (7)0.66998 (12)0.34916 (14)0.0557 (4)
H20.30490.71930.32250.084*
O30.24715 (7)0.32685 (13)0.21722 (14)0.0634 (5)
C4A0.35751 (9)0.65211 (16)0.26941 (19)0.0426 (5)
U11U22U33U12U13U23
Cl10.1129 (7)0.0477 (4)0.1184 (7)0.0259 (4)0.0126 (5)0.0036 (4)
O40.0448 (8)0.0439 (9)0.0435 (8)−0.0013 (8)0.0059 (7)0.0069 (7)
C90.0383 (11)0.0396 (12)0.0388 (11)−0.0018 (10)0.0107 (9)0.0008 (9)
C10.0461 (13)0.0374 (13)0.0534 (14)0.0104 (11)0.0018 (11)−0.0065 (11)
C8A0.0355 (11)0.0448 (13)0.0442 (12)−0.0033 (10)0.0106 (10)0.0000 (11)
C100.0373 (11)0.0370 (12)0.0387 (11)−0.0051 (10)0.0057 (9)−0.0002 (10)
C9A0.0378 (11)0.0357 (12)0.0445 (12)0.0006 (10)0.0095 (10)−0.0020 (10)
C4B0.0361 (11)0.0472 (14)0.0434 (12)−0.0042 (11)0.0116 (10)−0.0004 (10)
C150.0692 (15)0.0434 (14)0.0449 (13)0.0043 (13)0.0155 (12)0.0025 (11)
C40.0543 (14)0.0386 (13)0.0649 (15)−0.0021 (12)0.0085 (12)0.0008 (12)
C130.0535 (14)0.0392 (14)0.0655 (16)0.0009 (12)0.0020 (13)−0.0013 (13)
C50.0433 (13)0.0641 (16)0.0502 (13)0.0027 (12)0.0053 (11)0.0110 (12)
C80.0430 (13)0.0560 (15)0.0514 (13)−0.0089 (12)0.0104 (11)−0.0007 (12)
C110.0572 (14)0.0508 (15)0.0541 (14)−0.0007 (12)0.0191 (12)0.0088 (12)
C120.0616 (15)0.0510 (15)0.0655 (16)−0.0008 (13)0.0134 (14)0.0198 (13)
C20.0512 (14)0.0474 (15)0.0855 (18)−0.0023 (13)−0.0070 (13)−0.0072 (13)
C30.0606 (16)0.0410 (14)0.0834 (18)−0.0055 (13)−0.0015 (14)−0.0059 (13)
C140.0728 (17)0.0524 (16)0.0549 (15)0.0082 (14)0.0173 (13)−0.0064 (13)
C70.0525 (15)0.081 (2)0.0686 (17)−0.0218 (15)−0.0054 (13)0.0077 (15)
C60.0617 (16)0.080 (2)0.0533 (15)−0.0147 (15)−0.0061 (13)0.0034 (14)
O10.0702 (11)0.0537 (11)0.0493 (10)0.0097 (9)0.0012 (8)−0.0029 (8)
O20.0574 (10)0.0529 (11)0.0557 (9)0.0187 (8)0.0182 (8)0.0032 (8)
O30.0571 (10)0.0657 (11)0.0588 (10)−0.0254 (9)0.0089 (8)0.0072 (9)
C4A0.0409 (11)0.0400 (13)0.0417 (12)0.0045 (10)0.0079 (10)0.0006 (10)
Cl1—C131.742 (2)C13—C141.362 (3)
O4—C4B1.345 (2)C13—C121.367 (3)
O4—C4A1.443 (2)C5—C61.507 (3)
C9—C101.519 (3)C5—H17A0.9700
C9—C8A1.522 (3)C5—H17B0.9700
C9—C9A1.525 (3)C8—O31.238 (3)
C9—H70.9800C8—C71.508 (3)
C1—O11.212 (3)C11—C121.385 (3)
C1—C21.501 (3)C11—H60.9300
C1—C9A1.518 (3)C12—H10.9300
C8A—C4B1.351 (3)C2—C31.529 (3)
C8A—C81.445 (3)C2—H10A0.9700
C10—C151.375 (3)C2—H10B0.9700
C10—C111.383 (3)C3—H11A0.9700
C9A—C4A1.518 (3)C3—H11B0.9700
C9A—H80.9800C14—H30.9300
C4B—C51.494 (3)C7—C61.507 (3)
C15—C141.381 (3)C7—H15A0.9700
C15—H40.9300C7—H15B0.9700
C4—C4A1.506 (3)C6—H16A0.9700
C4—C31.524 (3)C6—H16B0.9700
C4—H12A0.9700O2—C4A1.400 (2)
C4—H12B0.9700O2—H20.8200
C4B—O4—C4A116.83 (16)O3—C8—C8A120.3 (2)
C10—C9—C8A112.73 (16)O3—C8—C7119.6 (2)
C10—C9—C9A111.88 (16)C8A—C8—C7120.0 (2)
C8A—C9—C9A109.10 (16)C10—C11—C12121.1 (2)
C10—C9—H7107.6C10—C11—H6119.5
C8A—C9—H7107.6C12—C11—H6119.5
C9A—C9—H7107.6C13—C12—C11119.4 (2)
O1—C1—C2122.8 (2)C13—C12—H1120.3
O1—C1—C9A122.0 (2)C11—C12—H1120.3
C2—C1—C9A115.2 (2)C1—C2—C3111.47 (19)
C4B—C8A—C8117.64 (19)C1—C2—H10A109.3
C4B—C8A—C9122.58 (19)C3—C2—H10A109.3
C8—C8A—C9119.22 (18)C1—C2—H10B109.3
C15—C10—C11117.8 (2)C3—C2—H10B109.3
C15—C10—C9121.93 (19)H10A—C2—H10B108.0
C11—C10—C9120.3 (2)C4—C3—C2111.3 (2)
C1—C9A—C4A106.39 (16)C4—C3—H11A109.4
C1—C9A—C9114.20 (18)C2—C3—H11A109.4
C4A—C9A—C9111.72 (16)C4—C3—H11B109.4
C1—C9A—H8108.1C2—C3—H11B109.4
C4A—C9A—H8108.1H11A—C3—H11B108.0
C9—C9A—H8108.1C13—C14—C15119.4 (2)
O4—C4B—C8A123.84 (18)C13—C14—H3120.3
O4—C4B—C5111.45 (19)C15—C14—H3120.3
C8A—C4B—C5124.7 (2)C6—C7—C8113.2 (2)
C10—C15—C14121.6 (2)C6—C7—H15A108.9
C10—C15—H4119.2C8—C7—H15A108.9
C14—C15—H4119.2C6—C7—H15B108.9
C4A—C4—C3110.44 (19)C8—C7—H15B108.9
C4A—C4—H12A109.6H15A—C7—H15B107.8
C3—C4—H12A109.6C7—C6—C5110.6 (2)
C4A—C4—H12B109.6C7—C6—H16A109.5
C3—C4—H12B109.6C5—C6—H16A109.5
H12A—C4—H12B108.1C7—C6—H16B109.5
C14—C13—C12120.8 (2)C5—C6—H16B109.5
C14—C13—Cl1120.3 (2)H16A—C6—H16B108.1
C12—C13—Cl1119.0 (2)C4A—O2—H2109.5
C4B—C5—C6111.0 (2)O2—C4A—O4109.33 (16)
C4B—C5—H17A109.4O2—C4A—C4113.13 (18)
C6—C5—H17A109.4O4—C4A—C4105.39 (16)
C4B—C5—H17B109.4O2—C4A—C9A105.09 (17)
C6—C5—H17B109.4O4—C4A—C9A110.61 (16)
H17A—C5—H17B108.0C4—C4A—C9A113.34 (17)
C10—C9—C8A—C4B−136.9 (2)C9—C8A—C8—C7−176.7 (2)
C9A—C9—C8A—C4B−12.0 (3)C15—C10—C11—C12−0.9 (3)
C10—C9—C8A—C851.9 (3)C9—C10—C11—C12179.75 (19)
C9A—C9—C8A—C8176.86 (18)C14—C13—C12—C110.4 (4)
C8A—C9—C10—C1559.2 (3)Cl1—C13—C12—C11−178.49 (17)
C9A—C9—C10—C15−64.2 (2)C10—C11—C12—C130.5 (4)
C8A—C9—C10—C11−121.5 (2)O1—C1—C2—C3−124.8 (3)
C9A—C9—C10—C11115.1 (2)C9A—C1—C2—C353.5 (3)
O1—C1—C9A—C4A122.9 (2)C4A—C4—C3—C253.2 (3)
C2—C1—C9A—C4A−55.4 (2)C1—C2—C3—C4−50.4 (3)
O1—C1—C9A—C9−0.8 (3)C12—C13—C14—C15−0.9 (4)
C2—C1—C9A—C9−179.16 (18)Cl1—C13—C14—C15177.94 (18)
C10—C9—C9A—C1−72.7 (2)C10—C15—C14—C130.5 (4)
C8A—C9—C9A—C1161.85 (17)O3—C8—C7—C6−164.5 (2)
C10—C9—C9A—C4A166.48 (17)C8A—C8—C7—C618.8 (4)
C8A—C9—C9A—C4A41.1 (2)C8—C7—C6—C5−49.6 (3)
C4A—O4—C4B—C8A−14.8 (3)C4B—C5—C6—C750.6 (3)
C4A—O4—C4B—C5164.42 (18)C4B—O4—C4A—O2−70.6 (2)
C8—C8A—C4B—O4168.96 (19)C4B—O4—C4A—C4167.55 (17)
C9—C8A—C4B—O4−2.3 (3)C4B—O4—C4A—C9A44.7 (2)
C8—C8A—C4B—C5−10.2 (3)C3—C4—C4A—O260.3 (2)
C9—C8A—C4B—C5178.6 (2)C3—C4—C4A—O4179.72 (19)
C11—C10—C15—C140.4 (3)C3—C4—C4A—C9A−59.2 (3)
C9—C10—C15—C14179.70 (19)C1—C9A—C4A—O2−66.0 (2)
O4—C4B—C5—C6158.98 (19)C9—C9A—C4A—O259.2 (2)
C8A—C4B—C5—C6−21.8 (3)C1—C9A—C4A—O4176.08 (17)
C4B—C8A—C8—O3−164.9 (2)C9—C9A—C4A—O4−58.7 (2)
C9—C8A—C8—O36.7 (3)C1—C9A—C4A—C458.0 (2)
C4B—C8A—C8—C711.8 (3)C9—C9A—C4A—C4−176.76 (17)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3i0.821.842.654 (2)172.
C2—H10A···O1ii0.972.523.199 (3)127.
C11—H6···O4iii0.932.563.483 (3)174.
C15—H4···O1iv0.932.583.452 (3)156.
C5—H17A···O3iv0.972.513.398 (3)153.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.821.842.654 (2)172
C2—H10A⋯O1ii0.972.523.199 (3)127
C11—H6⋯O4iii0.932.563.483 (3)174
C15—H4⋯O1iv0.932.583.452 (3)156
C5—H17A⋯O3iv0.972.513.398 (3)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3,3,6,6-Tetra-methyl-9-phenyl-3,4,5,6-tetra-hydro-9H-xanthene-1,8(2H,7H)-dione.

Authors:  B Palakshi Reddy; V Vijayakumar; T Narasimhamurthy; J Suresh; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

3.  3,3,6,6-Tetra-methyl-9-(2-nitro-phen-yl)-3,4,6,7-tetra-hydro-2H-xanthene-1,8(5H,9H)-dione.

Authors:  Yingming Mo; Hong-Jun Zang; Bo-Wen Cheng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31

4.  9-(3,4-Dimeth-oxy-phen-yl)-3,3,6,6-tetra-methyl-4,5,6,9-tetra-hydro-3H-xanthene-1,8(2H,7H)-dione.

Authors:  Sayed Hasan Mehdi; Othman Sulaiman; Raza Murad Ghalib; Chin Sing Yeap; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18
  4 in total
  2 in total

1.  4a-Hydroxy-9-(4-hydroxyphenyl)-4,4a,5,6,9,9a-hexahydro-3H-xanthene-1,8(2H,7H)-dione.

Authors:  Liying Wang; Weicheng Lu; Yan Yang; Yulin Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

2.  9-(2-Chloro-phen-yl)-4a-hy-droxy-3,4,4a,5,6,7,9,9a-octa-hydro-2H-xanthene-1,8-dione.

Authors:  Qiu-Ling Liu; Xin-Yan Wu; Feng Gao; Dan Bao; Fang-Ming Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-15
  2 in total

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