Literature DB >> 22904832

10a-Hy-droxy-9-(4-meth-oxy-phen-yl)-3,4,5,6,7,8a,9,10a-octa-hydro-1H-xanthene-1,8(2H)-dione.

Hoong-Kun Fun, Chin Wei Ooi, B Palakshi Reddy, V Vijayakumar, S Sarveswari.   

Abstract

In the title compound, C(20)H(22)O(5), the tetra-hydro-pyran, cyclo-hexene and cyclo-hexane rings of the xanthene ring system adopt half-chair, half-boat and chair conformations, respectively. The mean plane of the four roughly planar atoms of the tetra-hydro-pyran ring (r.m.s. deviation = 0.111 Å) forms a dihedral angle of 82.91 (4)° with the meth-oxy-benzene group. In the crystal, mol-ecules are linked via O-H⋯O and C-H⋯O hydrogen bonds into sheets lying parallel to the ac plane. The crystal is further consolidated by weak C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22904832      PMCID: PMC3414299          DOI: 10.1107/S160053681203005X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of xanthene, see: Menchen et al. (2003 ▶); Knight & Stephens (1989 ▶). For our previous studies in this area, see: Palakshi Reddy et al. (2010 ▶); Reddy et al. (2009 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For a related structure, see: Loh et al. (2011 ▶). For bond length data, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H22O5 M = 342.38 Orthorhombic, a = 15.7611 (9) Å b = 18.0089 (11) Å c = 11.6451 (7) Å V = 3305.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.48 × 0.23 × 0.11 mm

Data collection

Bruker APEX DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.954, T max = 0.990 97212 measured reflections 7190 independent reflections 6068 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.108 S = 1.05 7190 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681203005X/hb6880sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681203005X/hb6880Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681203005X/hb6880Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22O5F(000) = 1456
Mr = 342.38Dx = 1.376 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 9871 reflections
a = 15.7611 (9) Åθ = 2.6–34.8°
b = 18.0089 (11) ŵ = 0.10 mm1
c = 11.6451 (7) ÅT = 100 K
V = 3305.3 (3) Å3Block, colourless
Z = 80.48 × 0.23 × 0.11 mm
Bruker APEX DUO CCD diffractometer7190 independent reflections
Radiation source: fine-focus sealed tube6068 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
φ and ω scansθmax = 34.8°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −25→25
Tmin = 0.954, Tmax = 0.990k = −28→28
97212 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.059P)2 + 0.8159P] where P = (Fo2 + 2Fc2)/3
7190 reflections(Δ/σ)max = 0.001
231 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.41955 (4)0.43646 (3)−0.11953 (4)0.01606 (10)
O20.12092 (4)0.39264 (4)0.24042 (6)0.02378 (13)
O30.35506 (4)0.19277 (3)0.24263 (5)0.01785 (11)
O40.18491 (3)0.32355 (3)0.50833 (5)0.01370 (10)
O50.32107 (3)0.36949 (3)0.53699 (4)0.01306 (10)
C10.38478 (5)0.41214 (5)−0.22594 (6)0.01835 (14)
H1A0.41870.4321−0.28940.028*
H1B0.32620.4299−0.23280.028*
H1C0.38550.3578−0.22890.028*
C20.38251 (4)0.40829 (4)−0.02218 (5)0.01168 (11)
C30.42230 (5)0.42661 (4)0.08114 (6)0.01375 (12)
H3A0.47180.45670.08110.016*
C40.38909 (4)0.40059 (4)0.18390 (6)0.01299 (11)
H4A0.41650.41300.25400.016*
C50.31611 (4)0.35644 (4)0.18628 (5)0.01067 (11)
C60.27766 (4)0.33891 (4)0.08261 (6)0.01223 (11)
H6A0.22790.30920.08280.015*
C70.31024 (4)0.36386 (4)−0.02199 (6)0.01273 (11)
H7A0.28340.3507−0.09210.015*
C80.27857 (4)0.33101 (4)0.30012 (5)0.01100 (11)
H8A0.23100.29580.28410.013*
C90.34387 (4)0.29187 (4)0.37349 (5)0.01071 (11)
C100.37999 (4)0.22215 (4)0.33249 (6)0.01227 (11)
C110.44481 (5)0.18319 (4)0.40660 (6)0.01532 (12)
H11A0.48450.15530.35680.018*
H11B0.41550.14700.45680.018*
C120.49507 (5)0.23714 (4)0.48070 (6)0.01564 (12)
H12A0.53000.26980.43120.019*
H12B0.53370.20920.53200.019*
C130.43452 (4)0.28408 (4)0.55218 (6)0.01375 (12)
H13A0.41030.25320.61440.016*
H13B0.46640.32530.58820.016*
C140.36412 (4)0.31523 (4)0.48106 (6)0.01110 (11)
C150.23657 (4)0.38542 (4)0.49304 (6)0.01137 (11)
C160.20491 (5)0.45323 (4)0.55788 (6)0.01448 (12)
H16A0.24590.49450.54880.017*
H16B0.20040.44150.64070.017*
C170.11806 (5)0.47705 (4)0.51201 (7)0.01725 (13)
H17A0.10030.52340.55090.021*
H17B0.07580.43820.53030.021*
C180.11950 (5)0.48996 (5)0.38134 (7)0.02103 (15)
H18A0.06100.49900.35370.025*
H18B0.15380.53460.36400.025*
C190.15647 (5)0.42367 (4)0.31926 (6)0.01632 (13)
C200.24286 (4)0.39890 (4)0.36411 (6)0.01216 (11)
H20A0.28330.44090.35210.015*
H1O40.1773 (11)0.3167 (9)0.5830 (15)0.044 (4)*
U11U22U33U12U13U23
O10.0198 (2)0.0200 (2)0.0083 (2)−0.00409 (19)0.00179 (17)0.00088 (17)
O20.0187 (3)0.0334 (3)0.0192 (3)0.0069 (2)−0.0042 (2)−0.0018 (2)
O30.0242 (3)0.0162 (2)0.0131 (2)0.0013 (2)−0.00347 (19)−0.00439 (18)
O40.0146 (2)0.0138 (2)0.0126 (2)−0.00304 (16)0.00192 (16)0.00182 (17)
O50.0119 (2)0.0149 (2)0.0124 (2)0.00174 (16)−0.00052 (16)−0.00358 (16)
C10.0258 (4)0.0206 (3)0.0086 (3)−0.0017 (3)0.0007 (2)−0.0008 (2)
C20.0138 (3)0.0127 (3)0.0085 (2)0.0004 (2)0.00115 (19)0.00019 (19)
C30.0145 (3)0.0166 (3)0.0101 (2)−0.0037 (2)0.0003 (2)0.0000 (2)
C40.0137 (3)0.0161 (3)0.0092 (2)−0.0031 (2)−0.0005 (2)−0.0003 (2)
C50.0116 (2)0.0115 (2)0.0089 (2)0.00015 (19)0.00017 (19)0.00024 (19)
C60.0130 (3)0.0134 (3)0.0103 (2)−0.0016 (2)−0.00051 (19)−0.0007 (2)
C70.0144 (3)0.0146 (3)0.0092 (2)−0.0012 (2)−0.0010 (2)−0.0008 (2)
C80.0113 (2)0.0122 (2)0.0095 (2)−0.00026 (19)0.00045 (19)0.00068 (19)
C90.0119 (2)0.0110 (2)0.0093 (2)0.00007 (19)0.00030 (19)−0.00021 (19)
C100.0143 (3)0.0119 (2)0.0106 (2)−0.0004 (2)0.0003 (2)−0.0001 (2)
C110.0182 (3)0.0133 (3)0.0145 (3)0.0032 (2)−0.0021 (2)−0.0012 (2)
C120.0130 (3)0.0175 (3)0.0164 (3)0.0025 (2)−0.0017 (2)−0.0023 (2)
C130.0128 (3)0.0165 (3)0.0119 (3)0.0010 (2)−0.0021 (2)−0.0016 (2)
C140.0110 (2)0.0116 (2)0.0107 (2)−0.00030 (19)0.00070 (19)−0.00083 (19)
C150.0111 (3)0.0117 (2)0.0114 (2)−0.00005 (19)0.00047 (19)−0.0001 (2)
C160.0159 (3)0.0133 (3)0.0143 (3)0.0013 (2)0.0031 (2)−0.0016 (2)
C170.0165 (3)0.0179 (3)0.0173 (3)0.0049 (2)0.0041 (2)0.0010 (2)
C180.0232 (3)0.0223 (3)0.0176 (3)0.0103 (3)0.0031 (3)0.0032 (3)
C190.0157 (3)0.0199 (3)0.0133 (3)0.0047 (2)0.0021 (2)0.0039 (2)
C200.0130 (3)0.0132 (3)0.0103 (2)0.0011 (2)0.0019 (2)0.0011 (2)
O1—C21.3724 (8)C9—C141.3595 (9)
O1—C11.4240 (9)C9—C101.4590 (9)
O2—C191.2121 (10)C10—C111.5102 (10)
O3—C101.2366 (8)C11—C121.5220 (10)
O4—C151.3914 (8)C11—H11A0.9900
O4—H1O40.887 (17)C11—H11B0.9900
O5—C141.3561 (8)C12—C131.5225 (10)
O5—C151.4552 (8)C12—H12A0.9900
C1—H1A0.9800C12—H12B0.9900
C1—H1B0.9800C13—C141.4940 (10)
C1—H1C0.9800C13—H13A0.9900
C2—C71.3919 (10)C13—H13B0.9900
C2—C31.3963 (9)C15—C161.5201 (10)
C3—C41.3876 (9)C15—C201.5241 (9)
C3—H3A0.9500C16—C171.5306 (11)
C4—C51.3986 (9)C16—H16A0.9900
C4—H4A0.9500C16—H16B0.9900
C5—C61.3872 (9)C17—C181.5395 (11)
C5—C81.5223 (9)C17—H17A0.9900
C6—C71.3961 (9)C17—H17B0.9900
C6—H6A0.9500C18—C191.5124 (11)
C7—H7A0.9500C18—H18A0.9900
C8—C91.5120 (9)C18—H18B0.9900
C8—C201.5383 (9)C19—C201.5250 (10)
C8—H8A1.0000C20—H20A1.0000
C2—O1—C1116.20 (6)C13—C12—H12A109.7
C15—O4—H1O4108.5 (11)C11—C12—H12B109.7
C14—O5—C15115.53 (5)C13—C12—H12B109.7
O1—C1—H1A109.5H12A—C12—H12B108.2
O1—C1—H1B109.5C14—C13—C12111.78 (6)
H1A—C1—H1B109.5C14—C13—H13A109.3
O1—C1—H1C109.5C12—C13—H13A109.3
H1A—C1—H1C109.5C14—C13—H13B109.3
H1B—C1—H1C109.5C12—C13—H13B109.3
O1—C2—C7124.19 (6)H13A—C13—H13B107.9
O1—C2—C3115.68 (6)O5—C14—C9123.23 (6)
C7—C2—C3120.13 (6)O5—C14—C13112.08 (6)
C4—C3—C2119.60 (6)C9—C14—C13124.67 (6)
C4—C3—H3A120.2O4—C15—O5109.43 (5)
C2—C3—H3A120.2O4—C15—C16112.80 (6)
C3—C4—C5121.28 (6)O5—C15—C16106.51 (5)
C3—C4—H4A119.4O4—C15—C20106.96 (5)
C5—C4—H4A119.4O5—C15—C20108.57 (5)
C6—C5—C4118.13 (6)C16—C15—C20112.50 (6)
C6—C5—C8121.31 (6)C15—C16—C17110.21 (6)
C4—C5—C8120.53 (6)C15—C16—H16A109.6
C5—C6—C7121.69 (6)C17—C16—H16A109.6
C5—C6—H6A119.2C15—C16—H16B109.6
C7—C6—H6A119.2C17—C16—H16B109.6
C2—C7—C6119.17 (6)H16A—C16—H16B108.1
C2—C7—H7A120.4C16—C17—C18111.97 (6)
C6—C7—H7A120.4C16—C17—H17A109.2
C9—C8—C5111.58 (5)C18—C17—H17A109.2
C9—C8—C20110.23 (5)C16—C17—H17B109.2
C5—C8—C20108.97 (5)C18—C17—H17B109.2
C9—C8—H8A108.7H17A—C17—H17B107.9
C5—C8—H8A108.7C19—C18—C17111.03 (6)
C20—C8—H8A108.7C19—C18—H18A109.4
C14—C9—C10118.45 (6)C17—C18—H18A109.4
C14—C9—C8122.42 (6)C19—C18—H18B109.4
C10—C9—C8118.81 (6)C17—C18—H18B109.4
O3—C10—C9121.41 (6)H18A—C18—H18B108.0
O3—C10—C11119.98 (6)O2—C19—C18123.23 (7)
C9—C10—C11118.47 (6)O2—C19—C20122.49 (7)
C10—C11—C12112.31 (6)C18—C19—C20114.28 (6)
C10—C11—H11A109.1C15—C20—C19109.02 (5)
C12—C11—H11A109.1C15—C20—C8111.99 (5)
C10—C11—H11B109.1C19—C20—C8113.16 (6)
C12—C11—H11B109.1C15—C20—H20A107.5
H11A—C11—H11B107.9C19—C20—H20A107.5
C11—C12—C13109.76 (6)C8—C20—H20A107.5
C11—C12—H12A109.7
C1—O1—C2—C7−5.83 (10)C10—C9—C14—O5−165.29 (6)
C1—O1—C2—C3173.89 (6)C8—C9—C14—O58.13 (10)
O1—C2—C3—C4179.92 (6)C10—C9—C14—C1313.68 (10)
C7—C2—C3—C4−0.35 (11)C8—C9—C14—C13−172.89 (6)
C2—C3—C4—C5−0.24 (11)C12—C13—C14—O5−166.48 (6)
C3—C4—C5—C60.28 (10)C12—C13—C14—C914.45 (10)
C3—C4—C5—C8−177.51 (6)C14—O5—C15—O464.53 (7)
C4—C5—C6—C70.28 (10)C14—O5—C15—C16−173.25 (6)
C8—C5—C6—C7178.05 (6)C14—O5—C15—C20−51.88 (7)
O1—C2—C7—C6−179.41 (6)O4—C15—C16—C17−63.35 (7)
C3—C2—C7—C60.89 (10)O5—C15—C16—C17176.59 (5)
C5—C6—C7—C2−0.86 (10)C20—C15—C16—C1757.76 (8)
C6—C5—C8—C9128.25 (7)C15—C16—C17—C18−54.64 (8)
C4—C5—C8—C9−54.04 (8)C16—C17—C18—C1951.97 (9)
C6—C5—C8—C20−109.80 (7)C17—C18—C19—O2127.53 (8)
C4—C5—C8—C2067.91 (8)C17—C18—C19—C20−52.57 (9)
C5—C8—C9—C14122.43 (7)O4—C15—C20—C1967.95 (7)
C20—C8—C9—C141.21 (9)O5—C15—C20—C19−174.06 (5)
C5—C8—C9—C10−64.17 (8)C16—C15—C20—C19−56.44 (7)
C20—C8—C9—C10174.62 (6)O4—C15—C20—C8−58.05 (7)
C14—C9—C10—O3169.77 (7)O5—C15—C20—C859.94 (7)
C8—C9—C10—O3−3.90 (10)C16—C15—C20—C8177.56 (6)
C14—C9—C10—C11−6.00 (9)O2—C19—C20—C15−125.90 (8)
C8—C9—C10—C11−179.66 (6)C18—C19—C20—C1554.19 (8)
O3—C10—C11—C12155.40 (7)O2—C19—C20—C8−0.58 (10)
C9—C10—C11—C12−28.78 (9)C18—C19—C20—C8179.51 (6)
C10—C11—C12—C1355.12 (8)C9—C8—C20—C15−34.60 (7)
C11—C12—C13—C14−47.83 (8)C5—C8—C20—C15−157.37 (5)
C15—O5—C14—C918.89 (9)C9—C8—C20—C19−158.31 (6)
C15—O5—C14—C13−160.19 (6)C5—C8—C20—C1978.92 (7)
D—H···AD—HH···AD···AD—H···A
O4—H1O4···O3i0.886 (17)1.935 (17)2.8156 (8)172.0 (16)
C12—H12B···O4ii0.992.503.1879 (9)126
C12—H12A···Cg1iii0.992.783.6557 (8)147
C16—H16A···Cg1iv0.992.783.7467 (8)165
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H1O4⋯O3i 0.886 (17)1.935 (17)2.8156 (8)172.0 (16)
C12—H12B⋯O4ii 0.992.503.1879 (9)126
C12—H12ACg1iii 0.992.783.6557 (8)147
C16—H16ACg1iv 0.992.783.7467 (8)165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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