| Literature DB >> 21583312 |
Tuncer Hökelek, Yasemin Süzen, Barış Tercan, Ozgür Aybirdi, Hacali Necefoğlu.
Abstract
The centrosymmetric title Ni(II) complex, [Ni(C(9)H(10)NO(2))(2)(C(10)H(14)N(2)O)(2)(H(2)O)(2)], contains two dimethyl-amino-benzoate (DMAB), two diethyl-nicotinamide (DENA) ligands and two water mol-ecules, all of them monodentate. The four O atoms in the equatorial plane around the Ni(II) atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of the DENA ligands in axial positions. The Ni(II) atom is displaced by 0.681 (1) Å out of the least-squares plane of the carboxyl-ate group. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 5.61 (7)°, while the pyridine and benzene rings are oriented at a dihedral angle of 73.20 (4)°. An intra-molecular O-H⋯O hydrogen bond results in the formation of a six-membered ring with a twisted conformation. In the crystal structure, inter-molecular O-H⋯O and C-H⋯O hydrogen bonds link mol-ecules into a three-dimensional network. Two weak C-H⋯π inter-actions are also present.Entities:
Year: 2009 PMID: 21583312 PMCID: PMC2977174 DOI: 10.1107/S1600536809030098
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C9H10NO2)2(C10H14N2O)2(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9995 reflections |
| θ = 2.4–28.4° | |
| µ = 0.56 mm−1 | |
| β = 98.487 (2)° | Block, blue |
| 0.53 × 0.43 × 0.28 mm | |
| Bruker Kappa APEXII CCD area-detector diffractometer | 4819 independent reflections |
| Radiation source: fine-focus sealed tube | 4332 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.4°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 18748 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4819 reflections | (Δ/σ)max = 0.001 |
| 253 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.41 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0.5000 | 0.5000 | 0.5000 | 0.01159 (6) | |
| O1 | 0.46213 (13) | 0.50364 (4) | 0.63567 (6) | 0.01499 (17) | |
| O2 | 0.12365 (13) | 0.52742 (4) | 0.62891 (5) | 0.01770 (17) | |
| O3 | 0.24871 (14) | 0.28574 (5) | 0.24645 (6) | 0.02031 (19) | |
| O4 | 0.21205 (14) | 0.54434 (4) | 0.46008 (6) | 0.01635 (17) | |
| H41 | 0.122 (3) | 0.5242 (11) | 0.4234 (13) | 0.039 (5)* | |
| H42 | 0.169 (3) | 0.5441 (9) | 0.5121 (14) | 0.039 (5)* | |
| N1 | 0.37272 (15) | 0.40504 (5) | 0.48904 (6) | 0.01379 (19) | |
| N2 | −0.07839 (16) | 0.27925 (5) | 0.28157 (7) | 0.0179 (2) | |
| N3 | 0.31666 (19) | 0.39407 (6) | 1.02652 (7) | 0.0242 (2) | |
| C1 | 0.29426 (19) | 0.50566 (5) | 0.66964 (7) | 0.0135 (2) | |
| C2 | 0.30181 (18) | 0.47867 (6) | 0.76460 (7) | 0.0145 (2) | |
| C3 | 0.12187 (19) | 0.47318 (6) | 0.80487 (8) | 0.0177 (2) | |
| H3 | −0.0035 | 0.4882 | 0.7731 | 0.021* | |
| C4 | 0.1257 (2) | 0.44578 (6) | 0.89121 (8) | 0.0197 (2) | |
| H4 | 0.0029 | 0.4423 | 0.9161 | 0.024* | |
| C5 | 0.3124 (2) | 0.42317 (6) | 0.94177 (8) | 0.0182 (2) | |
| C6 | 0.4949 (2) | 0.43026 (7) | 0.90178 (8) | 0.0204 (2) | |
| H6 | 0.6216 | 0.4170 | 0.9342 | 0.024* | |
| C7 | 0.48766 (19) | 0.45671 (6) | 0.81467 (8) | 0.0177 (2) | |
| H7 | 0.6096 | 0.4599 | 0.7890 | 0.021* | |
| C8 | 0.28565 (18) | 0.38146 (6) | 0.40728 (7) | 0.0142 (2) | |
| H8 | 0.2801 | 0.4084 | 0.3559 | 0.017* | |
| C9 | 0.20358 (18) | 0.31856 (6) | 0.39614 (7) | 0.0141 (2) | |
| C10 | 0.21297 (19) | 0.27802 (6) | 0.47281 (8) | 0.0174 (2) | |
| H10 | 0.1598 | 0.2355 | 0.4673 | 0.021* | |
| C11 | 0.30290 (19) | 0.30200 (6) | 0.55766 (8) | 0.0176 (2) | |
| H11 | 0.3104 | 0.2760 | 0.6100 | 0.021* | |
| C12 | 0.38123 (18) | 0.36540 (6) | 0.56268 (7) | 0.0158 (2) | |
| H12 | 0.4425 | 0.3813 | 0.6195 | 0.019* | |
| C13 | 0.12500 (19) | 0.29353 (6) | 0.30122 (8) | 0.0149 (2) | |
| C14 | −0.2321 (2) | 0.29609 (7) | 0.34147 (9) | 0.0241 (3) | |
| H14A | −0.3490 | 0.3180 | 0.3053 | 0.029* | |
| H14B | −0.1700 | 0.3268 | 0.3880 | 0.029* | |
| C15 | −0.3107 (2) | 0.23647 (9) | 0.38829 (12) | 0.0381 (4) | |
| H15A | −0.3958 | 0.2508 | 0.4325 | 0.057* | |
| H15B | −0.1947 | 0.2119 | 0.4188 | 0.057* | |
| H15C | −0.3912 | 0.2091 | 0.3432 | 0.057* | |
| C16 | −0.1508 (2) | 0.24500 (7) | 0.19478 (9) | 0.0234 (3) | |
| H16A | −0.0881 | 0.2653 | 0.1459 | 0.028* | |
| H16B | −0.3002 | 0.2500 | 0.1800 | 0.028* | |
| C17 | −0.0974 (2) | 0.17227 (7) | 0.19917 (10) | 0.0292 (3) | |
| H17A | −0.1409 | 0.1525 | 0.1402 | 0.044* | |
| H17B | −0.1673 | 0.1513 | 0.2444 | 0.044* | |
| H17C | 0.0500 | 0.1670 | 0.2157 | 0.044* | |
| C18 | 0.1327 (3) | 0.39476 (7) | 1.07082 (9) | 0.0301 (3) | |
| H18A | 0.1616 | 0.3730 | 1.1292 | 0.045* | |
| H18B | 0.0219 | 0.3723 | 1.0328 | 0.045* | |
| H18C | 0.0924 | 0.4395 | 1.0799 | 0.045* | |
| C19 | 0.5140 (2) | 0.37889 (7) | 1.08181 (9) | 0.0273 (3) | |
| H19A | 0.4902 | 0.3617 | 1.1401 | 0.041* | |
| H19B | 0.5962 | 0.4182 | 1.0913 | 0.041* | |
| H19C | 0.5863 | 0.3468 | 1.0507 | 0.041* |
| Ni1 | 0.01140 (11) | 0.01277 (11) | 0.01029 (10) | −0.00191 (7) | 0.00061 (7) | 0.00090 (7) |
| O1 | 0.0140 (4) | 0.0182 (4) | 0.0128 (4) | −0.0029 (3) | 0.0018 (3) | 0.0004 (3) |
| O2 | 0.0151 (4) | 0.0226 (4) | 0.0150 (4) | 0.0013 (3) | 0.0009 (3) | 0.0008 (3) |
| O3 | 0.0219 (5) | 0.0234 (5) | 0.0160 (4) | −0.0044 (4) | 0.0040 (3) | −0.0023 (3) |
| O4 | 0.0145 (4) | 0.0197 (4) | 0.0143 (4) | −0.0009 (3) | 0.0006 (3) | 0.0025 (3) |
| N1 | 0.0130 (5) | 0.0144 (5) | 0.0139 (4) | −0.0008 (4) | 0.0018 (3) | 0.0009 (3) |
| N2 | 0.0162 (5) | 0.0170 (5) | 0.0192 (5) | −0.0022 (4) | −0.0016 (4) | −0.0012 (4) |
| N3 | 0.0285 (6) | 0.0277 (6) | 0.0172 (5) | 0.0012 (5) | 0.0058 (4) | 0.0072 (4) |
| C1 | 0.0165 (5) | 0.0112 (5) | 0.0125 (5) | −0.0029 (4) | 0.0012 (4) | −0.0020 (4) |
| C2 | 0.0171 (6) | 0.0140 (5) | 0.0125 (5) | −0.0016 (4) | 0.0027 (4) | −0.0008 (4) |
| C3 | 0.0159 (6) | 0.0204 (6) | 0.0168 (5) | 0.0008 (5) | 0.0024 (4) | 0.0011 (4) |
| C4 | 0.0189 (6) | 0.0223 (6) | 0.0194 (5) | −0.0004 (5) | 0.0077 (4) | 0.0022 (4) |
| C5 | 0.0245 (6) | 0.0159 (5) | 0.0147 (5) | −0.0004 (5) | 0.0042 (4) | 0.0010 (4) |
| C6 | 0.0187 (6) | 0.0242 (6) | 0.0177 (5) | 0.0030 (5) | 0.0009 (4) | 0.0038 (4) |
| C7 | 0.0157 (6) | 0.0208 (6) | 0.0174 (5) | 0.0005 (5) | 0.0044 (4) | 0.0021 (4) |
| C8 | 0.0134 (5) | 0.0156 (5) | 0.0135 (5) | −0.0004 (4) | 0.0021 (4) | 0.0019 (4) |
| C9 | 0.0129 (5) | 0.0153 (5) | 0.0142 (5) | −0.0001 (4) | 0.0018 (4) | −0.0004 (4) |
| C10 | 0.0194 (6) | 0.0138 (5) | 0.0193 (5) | −0.0021 (4) | 0.0036 (4) | 0.0017 (4) |
| C11 | 0.0202 (6) | 0.0174 (6) | 0.0154 (5) | 0.0007 (5) | 0.0030 (4) | 0.0041 (4) |
| C12 | 0.0160 (6) | 0.0183 (6) | 0.0129 (5) | 0.0009 (4) | 0.0009 (4) | 0.0010 (4) |
| C13 | 0.0179 (6) | 0.0103 (5) | 0.0158 (5) | −0.0018 (4) | −0.0003 (4) | 0.0014 (4) |
| C14 | 0.0156 (6) | 0.0278 (7) | 0.0285 (6) | 0.0027 (5) | 0.0018 (5) | 0.0014 (5) |
| C15 | 0.0214 (7) | 0.0479 (10) | 0.0471 (9) | 0.0047 (7) | 0.0118 (6) | 0.0191 (7) |
| C16 | 0.0233 (7) | 0.0214 (6) | 0.0223 (6) | −0.0049 (5) | −0.0066 (5) | −0.0020 (5) |
| C17 | 0.0324 (8) | 0.0206 (7) | 0.0331 (7) | −0.0061 (6) | −0.0004 (6) | −0.0057 (5) |
| C18 | 0.0427 (9) | 0.0274 (7) | 0.0238 (6) | 0.0071 (6) | 0.0174 (6) | 0.0082 (5) |
| C19 | 0.0373 (8) | 0.0272 (7) | 0.0166 (5) | 0.0057 (6) | 0.0016 (5) | 0.0050 (5) |
| Ni1—O1 | 2.0498 (8) | C8—H8 | 0.9300 |
| Ni1—O1i | 2.0498 (8) | C9—C8 | 1.3853 (16) |
| Ni1—O4 | 2.0842 (9) | C9—C10 | 1.3915 (15) |
| Ni1—O4i | 2.0842 (9) | C9—C13 | 1.5042 (15) |
| Ni1—N1 | 2.0962 (10) | C10—H10 | 0.9300 |
| Ni1—N1i | 2.0962 (10) | C11—C10 | 1.3874 (16) |
| O1—C1 | 1.2675 (14) | C11—C12 | 1.3831 (17) |
| O2—C1 | 1.2615 (15) | C11—H11 | 0.9300 |
| O3—C13 | 1.2309 (15) | C12—H12 | 0.9300 |
| O4—H41 | 0.84 (2) | C14—H14A | 0.9700 |
| O4—H42 | 0.85 (2) | C14—H14B | 0.9700 |
| N1—C8 | 1.3411 (14) | C15—C14 | 1.519 (2) |
| N1—C12 | 1.3452 (14) | C15—H15A | 0.9600 |
| N2—C13 | 1.3443 (16) | C15—H15B | 0.9600 |
| N2—C14 | 1.4682 (16) | C15—H15C | 0.9600 |
| N3—C18 | 1.4457 (17) | C16—N2 | 1.4700 (15) |
| N3—C19 | 1.4485 (18) | C16—H16A | 0.9700 |
| C2—C1 | 1.4958 (15) | C16—H16B | 0.9700 |
| C2—C7 | 1.3937 (17) | C17—C16 | 1.5173 (19) |
| C3—C2 | 1.3930 (16) | C17—H17A | 0.9600 |
| C3—C4 | 1.3846 (16) | C17—H17B | 0.9600 |
| C3—H3 | 0.9300 | C17—H17C | 0.9600 |
| C4—H4 | 0.9300 | C18—H18A | 0.9600 |
| C5—N3 | 1.3773 (15) | C18—H18B | 0.9600 |
| C5—C4 | 1.4050 (18) | C18—H18C | 0.9600 |
| C5—C6 | 1.4086 (17) | C19—H19A | 0.9600 |
| C6—C7 | 1.3850 (16) | C19—H19B | 0.9600 |
| C6—H6 | 0.9300 | C19—H19C | 0.9600 |
| C7—H7 | 0.9300 | ||
| O1—Ni1—O1i | 180.000 (1) | C8—C9—C10 | 118.69 (10) |
| O1—Ni1—O4 | 91.54 (3) | C8—C9—C13 | 119.61 (10) |
| O1i—Ni1—O4 | 88.46 (3) | C10—C9—C13 | 121.45 (10) |
| O1—Ni1—O4i | 88.46 (3) | C9—C10—H10 | 120.5 |
| O1i—Ni1—O4i | 91.54 (3) | C11—C10—C9 | 118.99 (11) |
| O1—Ni1—N1 | 90.30 (3) | C11—C10—H10 | 120.5 |
| O1i—Ni1—N1 | 89.70 (3) | C10—C11—H11 | 120.7 |
| O1—Ni1—N1i | 89.70 (3) | C12—C11—C10 | 118.58 (10) |
| O1i—Ni1—N1i | 90.30 (3) | C12—C11—H11 | 120.7 |
| O4—Ni1—O4i | 180.0 | N1—C12—C11 | 122.91 (11) |
| O4—Ni1—N1 | 92.72 (4) | N1—C12—H12 | 118.5 |
| O4i—Ni1—N1 | 87.28 (4) | C11—C12—H12 | 118.5 |
| O4—Ni1—N1i | 87.28 (4) | O3—C13—N2 | 123.34 (11) |
| O4i—Ni1—N1i | 92.72 (4) | O3—C13—C9 | 119.12 (11) |
| N1—Ni1—N1i | 180.0 | N2—C13—C9 | 117.51 (10) |
| C1—O1—Ni1 | 128.34 (8) | N2—C14—C15 | 113.05 (12) |
| Ni1—O4—H41 | 118.7 (14) | N2—C14—H14A | 109.0 |
| Ni1—O4—H42 | 98.5 (13) | N2—C14—H14B | 109.0 |
| H41—O4—H42 | 106.5 (18) | C15—C14—H14A | 109.0 |
| C8—N1—C12 | 118.12 (10) | C15—C14—H14B | 109.0 |
| C8—N1—Ni1 | 120.51 (7) | H14A—C14—H14B | 107.8 |
| C12—N1—Ni1 | 121.34 (8) | C14—C15—H15A | 109.5 |
| C13—N2—C14 | 123.83 (10) | C14—C15—H15B | 109.5 |
| C13—N2—C16 | 117.93 (10) | C14—C15—H15C | 109.5 |
| C14—N2—C16 | 118.24 (11) | H15A—C15—H15B | 109.5 |
| C5—N3—C18 | 119.82 (11) | H15A—C15—H15C | 109.5 |
| C5—N3—C19 | 119.89 (11) | H15B—C15—H15C | 109.5 |
| C18—N3—C19 | 118.24 (11) | N2—C16—C17 | 112.45 (11) |
| O1—C1—C2 | 116.46 (10) | N2—C16—H16A | 109.1 |
| O2—C1—O1 | 124.98 (10) | N2—C16—H16B | 109.1 |
| O2—C1—C2 | 118.55 (10) | C17—C16—H16A | 109.1 |
| C3—C2—C1 | 120.90 (11) | C17—C16—H16B | 109.1 |
| C3—C2—C7 | 117.88 (10) | H16A—C16—H16B | 107.8 |
| C7—C2—C1 | 121.20 (10) | C16—C17—H17A | 109.5 |
| C2—C3—H3 | 119.3 | C16—C17—H17B | 109.5 |
| C4—C3—C2 | 121.37 (11) | C16—C17—H17C | 109.5 |
| C4—C3—H3 | 119.3 | H17A—C17—H17B | 109.5 |
| C3—C4—C5 | 121.00 (11) | H17A—C17—H17C | 109.5 |
| C3—C4—H4 | 119.5 | H17B—C17—H17C | 109.5 |
| C5—C4—H4 | 119.5 | N3—C18—H18A | 109.5 |
| N3—C5—C4 | 121.38 (11) | N3—C18—H18B | 109.5 |
| N3—C5—C6 | 121.13 (12) | N3—C18—H18C | 109.5 |
| C4—C5—C6 | 117.48 (10) | H18A—C18—H18B | 109.5 |
| C5—C6—H6 | 119.6 | H18A—C18—H18C | 109.5 |
| C7—C6—C5 | 120.76 (11) | H18B—C18—H18C | 109.5 |
| C7—C6—H6 | 119.6 | N3—C19—H19A | 109.5 |
| C2—C7—H7 | 119.3 | N3—C19—H19B | 109.5 |
| C6—C7—C2 | 121.48 (11) | N3—C19—H19C | 109.5 |
| C6—C7—H7 | 119.3 | H19A—C19—H19B | 109.5 |
| N1—C8—C9 | 122.70 (10) | H19A—C19—H19C | 109.5 |
| N1—C8—H8 | 118.7 | H19B—C19—H19C | 109.5 |
| C9—C8—H8 | 118.7 | ||
| O4—Ni1—O1—C1 | 24.97 (9) | C7—C2—C1—O2 | −177.04 (11) |
| O4i—Ni1—O1—C1 | −155.03 (9) | C1—C2—C7—C6 | −178.48 (11) |
| N1—Ni1—O1—C1 | −67.76 (9) | C3—C2—C7—C6 | −0.08 (18) |
| N1i—Ni1—O1—C1 | 112.24 (9) | C4—C3—C2—C1 | 177.32 (11) |
| O1—Ni1—N1—C8 | 156.38 (9) | C4—C3—C2—C7 | −1.09 (18) |
| O1i—Ni1—N1—C8 | −23.62 (9) | C2—C3—C4—C5 | 0.7 (2) |
| O4—Ni1—N1—C8 | 64.83 (9) | C4—C5—N3—C18 | −8.82 (19) |
| O4i—Ni1—N1—C8 | −115.17 (9) | C4—C5—N3—C19 | −172.22 (12) |
| O1—Ni1—N1—C12 | −25.63 (9) | C6—C5—N3—C18 | 172.36 (13) |
| O1i—Ni1—N1—C12 | 154.37 (9) | C6—C5—N3—C19 | 8.97 (19) |
| O4—Ni1—N1—C12 | −117.18 (9) | N3—C5—C4—C3 | −178.04 (12) |
| O4i—Ni1—N1—C12 | 62.82 (9) | C6—C5—C4—C3 | 0.81 (19) |
| Ni1—O1—C1—O2 | −25.08 (16) | N3—C5—C6—C7 | 176.89 (12) |
| Ni1—O1—C1—C2 | 153.63 (8) | C4—C5—C6—C7 | −1.96 (19) |
| Ni1—N1—C8—C9 | 178.55 (8) | C5—C6—C7—C2 | 1.6 (2) |
| C12—N1—C8—C9 | 0.49 (17) | C10—C9—C8—N1 | −0.41 (18) |
| Ni1—N1—C12—C11 | −178.58 (9) | C13—C9—C8—N1 | −174.79 (11) |
| C8—N1—C12—C11 | −0.54 (17) | C8—C9—C10—C11 | 0.36 (17) |
| C14—N2—C13—O3 | −171.82 (11) | C13—C9—C10—C11 | 174.63 (11) |
| C14—N2—C13—C9 | 9.85 (17) | C8—C9—C13—O3 | 64.89 (15) |
| C16—N2—C13—O3 | 7.90 (18) | C8—C9—C13—N2 | −116.71 (12) |
| C16—N2—C13—C9 | −170.42 (10) | C10—C9—C13—O3 | −109.33 (13) |
| C13—N2—C14—C15 | −108.56 (14) | C10—C9—C13—N2 | 69.07 (15) |
| C16—N2—C14—C15 | 71.71 (15) | C12—C11—C10—C9 | −0.40 (18) |
| C3—C2—C1—O1 | −174.19 (11) | C10—C11—C12—N1 | 0.51 (18) |
| C3—C2—C1—O2 | 4.60 (17) | C17—C16—N2—C13 | 76.55 (15) |
| C7—C2—C1—O1 | 4.16 (16) | C17—C16—N2—C14 | −103.71 (14) |
| H··· | ||||
| O4—H41···O2ii | 0.84 (2) | 1.97 (2) | 2.7875 (12) | 163 (2) |
| O4—H42···O2 | 0.85 (2) | 1.82 (2) | 2.6552 (12) | 165.9 (18) |
| C11—H11···O3iii | 0.93 | 2.45 | 3.3641 (15) | 167 |
| C18—H18A···O3iv | 0.96 | 2.48 | 3.4038 (17) | 161 |
| C19—H19B···Cg1v | 0.96 | 2.82 | 3.7203 (15) | 157 |
| C15—H15A···Cg2vi | 0.96 | 2.91 | 3.7575 (16) | 148 |
Selected bond lengths (Å)
| Ni1—O1 | 2.0498 (8) |
| Ni1—O4 | 2.0842 (9) |
| Ni1—N1 | 2.0962 (10) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H41⋯O2i | 0.84 (2) | 1.97 (2) | 2.7875 (12) | 163 (2) |
| O4—H42⋯O2 | 0.85 (2) | 1.82 (2) | 2.6552 (12) | 165.9 (18) |
| C11—H11⋯O3ii | 0.93 | 2.45 | 3.3641 (15) | 167 |
| C18—H18 | 0.96 | 2.48 | 3.4038 (17) | 161 |
| C19—H19 | 0.96 | 2.82 | 3.7203 (15) | 157 |
| C15—H15 | 0.96 | 2.91 | 3.7575 (16) | 148 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg1 and Cg2 are the centroids of the C2–C7 and N1/C8–C12 rings, respectively.