Literature DB >> 21583312

Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-[4-(dimethyl-amino)benzoato-κO]nickel(II).

Tuncer Hökelek, Yasemin Süzen, Barış Tercan, Ozgür Aybirdi, Hacali Necefoğlu.   

Abstract

The centrosymmetric title Ni(II) complex, [Ni(C(9)H(10)NO(2))(2)(C(10)H(14)N(2)O)(2)(H(2)O)(2)], contains two dimethyl-amino-benzoate (DMAB), two diethyl-nicotinamide (DENA) ligands and two water mol-ecules, all of them monodentate. The four O atoms in the equatorial plane around the Ni(II) atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of the DENA ligands in axial positions. The Ni(II) atom is displaced by 0.681 (1) Å out of the least-squares plane of the carboxyl-ate group. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 5.61 (7)°, while the pyridine and benzene rings are oriented at a dihedral angle of 73.20 (4)°. An intra-molecular O-H⋯O hydrogen bond results in the formation of a six-membered ring with a twisted conformation. In the crystal structure, inter-molecular O-H⋯O and C-H⋯O hydrogen bonds link mol-ecules into a three-dimensional network. Two weak C-H⋯π inter-actions are also present.

Entities:  

Year:  2009        PMID: 21583312      PMCID: PMC2977174          DOI: 10.1107/S1600536809030098

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For our ongoing investigations of the transition metal complexes of nicotinamide, and/or the nicotinic acid derivative N,N-diethyl­nicotinamide, an important respiratory stimulant, see: Bigoli et al. (1972 ▶); Krishnamachari (1974 ▶). For related structures, see: Hökelek et al. (2009 ▶); Sertçelik et al. (2009 ▶).

Experimental

Crystal data

[Ni(C9H10NO2)2(C10H14N2O)2(H2O)2] M = 779.57 Monoclinic, a = 6.5081 (1) Å b = 20.3157 (3) Å c = 14.7235 (2) Å β = 98.487 (2)° V = 1925.37 (5) Å3 Z = 2 Mo Kα radiation μ = 0.56 mm−1 T = 100 K 0.53 × 0.43 × 0.28 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.751, T max = 0.851 18748 measured reflections 4819 independent reflections 4332 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.076 S = 1.04 4819 reflections 253 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT ; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809030098/xu2570sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030098/xu2570Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C9H10NO2)2(C10H14N2O)2(H2O)2]F(000) = 828
Mr = 779.57Dx = 1.345 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9995 reflections
a = 6.5081 (1) Åθ = 2.4–28.4°
b = 20.3157 (3) ŵ = 0.56 mm1
c = 14.7235 (2) ÅT = 100 K
β = 98.487 (2)°Block, blue
V = 1925.37 (5) Å30.53 × 0.43 × 0.28 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer4819 independent reflections
Radiation source: fine-focus sealed tube4332 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 28.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.751, Tmax = 0.851k = −25→27
18748 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0382P)2 + 0.8491P] where P = (Fo2 + 2Fc2)/3
4819 reflections(Δ/σ)max = 0.001
253 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.50000.50000.01159 (6)
O10.46213 (13)0.50364 (4)0.63567 (6)0.01499 (17)
O20.12365 (13)0.52742 (4)0.62891 (5)0.01770 (17)
O30.24871 (14)0.28574 (5)0.24645 (6)0.02031 (19)
O40.21205 (14)0.54434 (4)0.46008 (6)0.01635 (17)
H410.122 (3)0.5242 (11)0.4234 (13)0.039 (5)*
H420.169 (3)0.5441 (9)0.5121 (14)0.039 (5)*
N10.37272 (15)0.40504 (5)0.48904 (6)0.01379 (19)
N2−0.07839 (16)0.27925 (5)0.28157 (7)0.0179 (2)
N30.31666 (19)0.39407 (6)1.02652 (7)0.0242 (2)
C10.29426 (19)0.50566 (5)0.66964 (7)0.0135 (2)
C20.30181 (18)0.47867 (6)0.76460 (7)0.0145 (2)
C30.12187 (19)0.47318 (6)0.80487 (8)0.0177 (2)
H3−0.00350.48820.77310.021*
C40.1257 (2)0.44578 (6)0.89121 (8)0.0197 (2)
H40.00290.44230.91610.024*
C50.3124 (2)0.42317 (6)0.94177 (8)0.0182 (2)
C60.4949 (2)0.43026 (7)0.90178 (8)0.0204 (2)
H60.62160.41700.93420.024*
C70.48766 (19)0.45671 (6)0.81467 (8)0.0177 (2)
H70.60960.45990.78900.021*
C80.28565 (18)0.38146 (6)0.40728 (7)0.0142 (2)
H80.28010.40840.35590.017*
C90.20358 (18)0.31856 (6)0.39614 (7)0.0141 (2)
C100.21297 (19)0.27802 (6)0.47281 (8)0.0174 (2)
H100.15980.23550.46730.021*
C110.30290 (19)0.30200 (6)0.55766 (8)0.0176 (2)
H110.31040.27600.61000.021*
C120.38123 (18)0.36540 (6)0.56268 (7)0.0158 (2)
H120.44250.38130.61950.019*
C130.12500 (19)0.29353 (6)0.30122 (8)0.0149 (2)
C14−0.2321 (2)0.29609 (7)0.34147 (9)0.0241 (3)
H14A−0.34900.31800.30530.029*
H14B−0.17000.32680.38800.029*
C15−0.3107 (2)0.23647 (9)0.38829 (12)0.0381 (4)
H15A−0.39580.25080.43250.057*
H15B−0.19470.21190.41880.057*
H15C−0.39120.20910.34320.057*
C16−0.1508 (2)0.24500 (7)0.19478 (9)0.0234 (3)
H16A−0.08810.26530.14590.028*
H16B−0.30020.25000.18000.028*
C17−0.0974 (2)0.17227 (7)0.19917 (10)0.0292 (3)
H17A−0.14090.15250.14020.044*
H17B−0.16730.15130.24440.044*
H17C0.05000.16700.21570.044*
C180.1327 (3)0.39476 (7)1.07082 (9)0.0301 (3)
H18A0.16160.37301.12920.045*
H18B0.02190.37231.03280.045*
H18C0.09240.43951.07990.045*
C190.5140 (2)0.37889 (7)1.08181 (9)0.0273 (3)
H19A0.49020.36171.14010.041*
H19B0.59620.41821.09130.041*
H19C0.58630.34681.05070.041*
U11U22U33U12U13U23
Ni10.01140 (11)0.01277 (11)0.01029 (10)−0.00191 (7)0.00061 (7)0.00090 (7)
O10.0140 (4)0.0182 (4)0.0128 (4)−0.0029 (3)0.0018 (3)0.0004 (3)
O20.0151 (4)0.0226 (4)0.0150 (4)0.0013 (3)0.0009 (3)0.0008 (3)
O30.0219 (5)0.0234 (5)0.0160 (4)−0.0044 (4)0.0040 (3)−0.0023 (3)
O40.0145 (4)0.0197 (4)0.0143 (4)−0.0009 (3)0.0006 (3)0.0025 (3)
N10.0130 (5)0.0144 (5)0.0139 (4)−0.0008 (4)0.0018 (3)0.0009 (3)
N20.0162 (5)0.0170 (5)0.0192 (5)−0.0022 (4)−0.0016 (4)−0.0012 (4)
N30.0285 (6)0.0277 (6)0.0172 (5)0.0012 (5)0.0058 (4)0.0072 (4)
C10.0165 (5)0.0112 (5)0.0125 (5)−0.0029 (4)0.0012 (4)−0.0020 (4)
C20.0171 (6)0.0140 (5)0.0125 (5)−0.0016 (4)0.0027 (4)−0.0008 (4)
C30.0159 (6)0.0204 (6)0.0168 (5)0.0008 (5)0.0024 (4)0.0011 (4)
C40.0189 (6)0.0223 (6)0.0194 (5)−0.0004 (5)0.0077 (4)0.0022 (4)
C50.0245 (6)0.0159 (5)0.0147 (5)−0.0004 (5)0.0042 (4)0.0010 (4)
C60.0187 (6)0.0242 (6)0.0177 (5)0.0030 (5)0.0009 (4)0.0038 (4)
C70.0157 (6)0.0208 (6)0.0174 (5)0.0005 (5)0.0044 (4)0.0021 (4)
C80.0134 (5)0.0156 (5)0.0135 (5)−0.0004 (4)0.0021 (4)0.0019 (4)
C90.0129 (5)0.0153 (5)0.0142 (5)−0.0001 (4)0.0018 (4)−0.0004 (4)
C100.0194 (6)0.0138 (5)0.0193 (5)−0.0021 (4)0.0036 (4)0.0017 (4)
C110.0202 (6)0.0174 (6)0.0154 (5)0.0007 (5)0.0030 (4)0.0041 (4)
C120.0160 (6)0.0183 (6)0.0129 (5)0.0009 (4)0.0009 (4)0.0010 (4)
C130.0179 (6)0.0103 (5)0.0158 (5)−0.0018 (4)−0.0003 (4)0.0014 (4)
C140.0156 (6)0.0278 (7)0.0285 (6)0.0027 (5)0.0018 (5)0.0014 (5)
C150.0214 (7)0.0479 (10)0.0471 (9)0.0047 (7)0.0118 (6)0.0191 (7)
C160.0233 (7)0.0214 (6)0.0223 (6)−0.0049 (5)−0.0066 (5)−0.0020 (5)
C170.0324 (8)0.0206 (7)0.0331 (7)−0.0061 (6)−0.0004 (6)−0.0057 (5)
C180.0427 (9)0.0274 (7)0.0238 (6)0.0071 (6)0.0174 (6)0.0082 (5)
C190.0373 (8)0.0272 (7)0.0166 (5)0.0057 (6)0.0016 (5)0.0050 (5)
Ni1—O12.0498 (8)C8—H80.9300
Ni1—O1i2.0498 (8)C9—C81.3853 (16)
Ni1—O42.0842 (9)C9—C101.3915 (15)
Ni1—O4i2.0842 (9)C9—C131.5042 (15)
Ni1—N12.0962 (10)C10—H100.9300
Ni1—N1i2.0962 (10)C11—C101.3874 (16)
O1—C11.2675 (14)C11—C121.3831 (17)
O2—C11.2615 (15)C11—H110.9300
O3—C131.2309 (15)C12—H120.9300
O4—H410.84 (2)C14—H14A0.9700
O4—H420.85 (2)C14—H14B0.9700
N1—C81.3411 (14)C15—C141.519 (2)
N1—C121.3452 (14)C15—H15A0.9600
N2—C131.3443 (16)C15—H15B0.9600
N2—C141.4682 (16)C15—H15C0.9600
N3—C181.4457 (17)C16—N21.4700 (15)
N3—C191.4485 (18)C16—H16A0.9700
C2—C11.4958 (15)C16—H16B0.9700
C2—C71.3937 (17)C17—C161.5173 (19)
C3—C21.3930 (16)C17—H17A0.9600
C3—C41.3846 (16)C17—H17B0.9600
C3—H30.9300C17—H17C0.9600
C4—H40.9300C18—H18A0.9600
C5—N31.3773 (15)C18—H18B0.9600
C5—C41.4050 (18)C18—H18C0.9600
C5—C61.4086 (17)C19—H19A0.9600
C6—C71.3850 (16)C19—H19B0.9600
C6—H60.9300C19—H19C0.9600
C7—H70.9300
O1—Ni1—O1i180.000 (1)C8—C9—C10118.69 (10)
O1—Ni1—O491.54 (3)C8—C9—C13119.61 (10)
O1i—Ni1—O488.46 (3)C10—C9—C13121.45 (10)
O1—Ni1—O4i88.46 (3)C9—C10—H10120.5
O1i—Ni1—O4i91.54 (3)C11—C10—C9118.99 (11)
O1—Ni1—N190.30 (3)C11—C10—H10120.5
O1i—Ni1—N189.70 (3)C10—C11—H11120.7
O1—Ni1—N1i89.70 (3)C12—C11—C10118.58 (10)
O1i—Ni1—N1i90.30 (3)C12—C11—H11120.7
O4—Ni1—O4i180.0N1—C12—C11122.91 (11)
O4—Ni1—N192.72 (4)N1—C12—H12118.5
O4i—Ni1—N187.28 (4)C11—C12—H12118.5
O4—Ni1—N1i87.28 (4)O3—C13—N2123.34 (11)
O4i—Ni1—N1i92.72 (4)O3—C13—C9119.12 (11)
N1—Ni1—N1i180.0N2—C13—C9117.51 (10)
C1—O1—Ni1128.34 (8)N2—C14—C15113.05 (12)
Ni1—O4—H41118.7 (14)N2—C14—H14A109.0
Ni1—O4—H4298.5 (13)N2—C14—H14B109.0
H41—O4—H42106.5 (18)C15—C14—H14A109.0
C8—N1—C12118.12 (10)C15—C14—H14B109.0
C8—N1—Ni1120.51 (7)H14A—C14—H14B107.8
C12—N1—Ni1121.34 (8)C14—C15—H15A109.5
C13—N2—C14123.83 (10)C14—C15—H15B109.5
C13—N2—C16117.93 (10)C14—C15—H15C109.5
C14—N2—C16118.24 (11)H15A—C15—H15B109.5
C5—N3—C18119.82 (11)H15A—C15—H15C109.5
C5—N3—C19119.89 (11)H15B—C15—H15C109.5
C18—N3—C19118.24 (11)N2—C16—C17112.45 (11)
O1—C1—C2116.46 (10)N2—C16—H16A109.1
O2—C1—O1124.98 (10)N2—C16—H16B109.1
O2—C1—C2118.55 (10)C17—C16—H16A109.1
C3—C2—C1120.90 (11)C17—C16—H16B109.1
C3—C2—C7117.88 (10)H16A—C16—H16B107.8
C7—C2—C1121.20 (10)C16—C17—H17A109.5
C2—C3—H3119.3C16—C17—H17B109.5
C4—C3—C2121.37 (11)C16—C17—H17C109.5
C4—C3—H3119.3H17A—C17—H17B109.5
C3—C4—C5121.00 (11)H17A—C17—H17C109.5
C3—C4—H4119.5H17B—C17—H17C109.5
C5—C4—H4119.5N3—C18—H18A109.5
N3—C5—C4121.38 (11)N3—C18—H18B109.5
N3—C5—C6121.13 (12)N3—C18—H18C109.5
C4—C5—C6117.48 (10)H18A—C18—H18B109.5
C5—C6—H6119.6H18A—C18—H18C109.5
C7—C6—C5120.76 (11)H18B—C18—H18C109.5
C7—C6—H6119.6N3—C19—H19A109.5
C2—C7—H7119.3N3—C19—H19B109.5
C6—C7—C2121.48 (11)N3—C19—H19C109.5
C6—C7—H7119.3H19A—C19—H19B109.5
N1—C8—C9122.70 (10)H19A—C19—H19C109.5
N1—C8—H8118.7H19B—C19—H19C109.5
C9—C8—H8118.7
O4—Ni1—O1—C124.97 (9)C7—C2—C1—O2−177.04 (11)
O4i—Ni1—O1—C1−155.03 (9)C1—C2—C7—C6−178.48 (11)
N1—Ni1—O1—C1−67.76 (9)C3—C2—C7—C6−0.08 (18)
N1i—Ni1—O1—C1112.24 (9)C4—C3—C2—C1177.32 (11)
O1—Ni1—N1—C8156.38 (9)C4—C3—C2—C7−1.09 (18)
O1i—Ni1—N1—C8−23.62 (9)C2—C3—C4—C50.7 (2)
O4—Ni1—N1—C864.83 (9)C4—C5—N3—C18−8.82 (19)
O4i—Ni1—N1—C8−115.17 (9)C4—C5—N3—C19−172.22 (12)
O1—Ni1—N1—C12−25.63 (9)C6—C5—N3—C18172.36 (13)
O1i—Ni1—N1—C12154.37 (9)C6—C5—N3—C198.97 (19)
O4—Ni1—N1—C12−117.18 (9)N3—C5—C4—C3−178.04 (12)
O4i—Ni1—N1—C1262.82 (9)C6—C5—C4—C30.81 (19)
Ni1—O1—C1—O2−25.08 (16)N3—C5—C6—C7176.89 (12)
Ni1—O1—C1—C2153.63 (8)C4—C5—C6—C7−1.96 (19)
Ni1—N1—C8—C9178.55 (8)C5—C6—C7—C21.6 (2)
C12—N1—C8—C90.49 (17)C10—C9—C8—N1−0.41 (18)
Ni1—N1—C12—C11−178.58 (9)C13—C9—C8—N1−174.79 (11)
C8—N1—C12—C11−0.54 (17)C8—C9—C10—C110.36 (17)
C14—N2—C13—O3−171.82 (11)C13—C9—C10—C11174.63 (11)
C14—N2—C13—C99.85 (17)C8—C9—C13—O364.89 (15)
C16—N2—C13—O37.90 (18)C8—C9—C13—N2−116.71 (12)
C16—N2—C13—C9−170.42 (10)C10—C9—C13—O3−109.33 (13)
C13—N2—C14—C15−108.56 (14)C10—C9—C13—N269.07 (15)
C16—N2—C14—C1571.71 (15)C12—C11—C10—C9−0.40 (18)
C3—C2—C1—O1−174.19 (11)C10—C11—C12—N10.51 (18)
C3—C2—C1—O24.60 (17)C17—C16—N2—C1376.55 (15)
C7—C2—C1—O14.16 (16)C17—C16—N2—C14−103.71 (14)
D—H···AD—HH···AD···AD—H···A
O4—H41···O2ii0.84 (2)1.97 (2)2.7875 (12)163 (2)
O4—H42···O20.85 (2)1.82 (2)2.6552 (12)165.9 (18)
C11—H11···O3iii0.932.453.3641 (15)167
C18—H18A···O3iv0.962.483.4038 (17)161
C19—H19B···Cg1v0.962.823.7203 (15)157
C15—H15A···Cg2vi0.962.913.7575 (16)148
Table 1

Selected bond lengths (Å)

Ni1—O12.0498 (8)
Ni1—O42.0842 (9)
Ni1—N12.0962 (10)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O2i0.84 (2)1.97 (2)2.7875 (12)163 (2)
O4—H42⋯O20.85 (2)1.82 (2)2.6552 (12)165.9 (18)
C11—H11⋯O3ii0.932.453.3641 (15)167
C18—H18A⋯O3iii0.962.483.4038 (17)161
C19—H19BCg1iv0.962.823.7203 (15)157
C15—H15ACg2v0.962.913.7575 (16)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg1 and Cg2 are the centroids of the C2–C7 and N1/C8–C12 rings, respectively.

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Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

4.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  Bis[μ-4-(4-carb-oxy-phen-oxy)phthalato]bis-[triaqua-nickel(II)].

Authors:  Xue Cai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11
  1 in total

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