| Literature DB >> 21578089 |
Tuncer Hökelek, Hakan Dal, Barış Tercan, F Elif Ozbek, Hacali Necefoğlu.
Abstract
The asymmetric unit of the title complex, [Ni(C(6)H(6)N(2)O)(2)(H(2)O)(4)](C(7)H(4)FO(2))(2), contains one-half of the complex cation with the Ni(II) atom located on an inversion center, and a 2-fluoro-benzoate (FB) counter-anion. The four O atoms in the equatorial plane around the Ni atom form a slightly distorted square-planar arrangement with an average Ni-O bond length of 2.079 Å, and the slightly distorted octa-hedral coordination is completed by the two N atoms of the nicotinamide (NA) ligands in the axial positions. The dihedral angle between the carboxyl group and the attached benzene ring is 28.28 (11)°, while the pyridine and benzene rings are oriented at a dihedral angle of 8.31 (4)°. In the crystal structure, O-H⋯O, N-H⋯O, C-H⋯O, and C-H⋯F hydrogen bonds link the mol-ecules into a three-dimensional network. π-π Contacts between the pyridine and benzene rings [centroid-centroid distance = 3.626 (1) Å] may further stabilize the crystal structure. The 2-fluoro-benzoate anion is disordered over two orientations, with an occupancy ratio of 0.85:0.15.Entities:
Year: 2009 PMID: 21578089 PMCID: PMC2970982 DOI: 10.1107/S1600536809040392
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C6H6N2O)2(H2O)4](C7H4FO2)2 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 9281 reflections | |
| θ = 2.9–28.5° | |
| µ = 0.81 mm−1 | |
| α = 82.115 (2)° | |
| β = 77.332 (2)° | Block, blue |
| γ = 63.664 (1)° | 0.33 × 0.28 × 0.18 mm |
| Bruker Kappa APEXII CCD area-detector diffractometer | 3339 independent reflections |
| Radiation source: fine-focus sealed tube | 3241 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.5°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 12196 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3339 reflections | (Δ/σ)max < 0.001 |
| 221 parameters | Δρmax = 0.55 e Å−3 |
| 7 restraints | Δρmin = −0.70 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Ni1 | 0.5000 | 0.5000 | 0.5000 | 0.00977 (8) | |
| F1 | 0.68826 (15) | 0.96457 (16) | 0.86081 (7) | 0.0165 (2) | 0.85 |
| F1' | 0.3316 (12) | 0.9351 (12) | 0.6229 (2) | 0.0341 (16) | 0.15 |
| O1 | 0.27958 (17) | 0.42766 (17) | 0.97115 (7) | 0.0185 (2) | |
| O2 | 0.90572 (16) | 0.80284 (16) | 0.68605 (7) | 0.0151 (2) | |
| O3 | 0.70091 (16) | 0.95073 (15) | 0.57688 (7) | 0.0139 (2) | |
| O4 | 0.36327 (16) | 0.29566 (15) | 0.53691 (7) | 0.01338 (19) | |
| H4A | 0.317 (4) | 0.256 (4) | 0.4950 (15) | 0.040 (6)* | |
| H4B | 0.457 (3) | 0.184 (3) | 0.5609 (16) | 0.035 (6)* | |
| O5 | 0.21175 (16) | 0.74407 (16) | 0.53176 (7) | 0.0165 (2) | |
| H5A | 0.109 (3) | 0.771 (4) | 0.5817 (14) | 0.038 (6)* | |
| H5B | 0.205 (4) | 0.863 (3) | 0.5056 (15) | 0.032 (6)* | |
| N1 | 0.54874 (18) | 0.45933 (17) | 0.64030 (8) | 0.0115 (2) | |
| N2 | 0.04456 (19) | 0.57587 (19) | 0.87183 (8) | 0.0159 (2) | |
| H2A | −0.0596 | 0.5881 | 0.9169 | 0.019* | |
| H2B | 0.0239 | 0.6181 | 0.8146 | 0.019* | |
| C1 | 0.3928 (2) | 0.4781 (2) | 0.71424 (9) | 0.0119 (2) | |
| H1 | 0.2651 | 0.4963 | 0.7017 | 0.014* | |
| C2 | 0.4136 (2) | 0.4717 (2) | 0.80876 (9) | 0.0120 (2) | |
| C3 | 0.6051 (2) | 0.4424 (2) | 0.82775 (10) | 0.0138 (3) | |
| H3 | 0.6241 | 0.4368 | 0.8901 | 0.017* | |
| C4 | 0.7670 (2) | 0.4217 (2) | 0.75166 (10) | 0.0141 (3) | |
| H4 | 0.8966 | 0.4022 | 0.7623 | 0.017* | |
| C5 | 0.7335 (2) | 0.4306 (2) | 0.65972 (10) | 0.0132 (3) | |
| H5 | 0.8432 | 0.4160 | 0.6092 | 0.016* | |
| C6 | 0.2383 (2) | 0.4915 (2) | 0.89077 (10) | 0.0134 (3) | |
| C7 | 0.5243 (2) | 0.9628 (2) | 0.83226 (10) | 0.0148 (3) | |
| H9' | 0.6417 | 0.9567 | 0.8511 | 0.018* | 0.15 |
| C8 | 0.5354 (2) | 0.9368 (2) | 0.73699 (9) | 0.0116 (2) | |
| C9 | 0.3553 (2) | 0.9481 (2) | 0.71176 (10) | 0.0135 (3) | |
| H9 | 0.3565 | 0.9329 | 0.6485 | 0.016* | 0.85 |
| C10 | 0.1751 (2) | 0.9811 (2) | 0.77808 (11) | 0.0173 (3) | |
| H10 | 0.0579 | 0.9859 | 0.7596 | 0.021* | |
| C11 | 0.1708 (2) | 1.0070 (2) | 0.87229 (11) | 0.0204 (3) | |
| H11 | 0.0495 | 1.0310 | 0.9170 | 0.025* | |
| C12 | 0.3461 (2) | 0.9975 (2) | 0.90026 (11) | 0.0200 (3) | |
| H12 | 0.3440 | 1.0141 | 0.9635 | 0.024* | |
| C13 | 0.7298 (2) | 0.8941 (2) | 0.66226 (9) | 0.0114 (2) |
| Ni1 | 0.00894 (12) | 0.01136 (12) | 0.00765 (12) | −0.00371 (9) | −0.00012 (8) | −0.00058 (8) |
| F1 | 0.0127 (5) | 0.0252 (5) | 0.0127 (4) | −0.0076 (4) | −0.0042 (4) | −0.0034 (4) |
| F1' | 0.030 (4) | 0.037 (4) | 0.036 (4) | −0.016 (3) | −0.006 (3) | 0.001 (3) |
| O1 | 0.0174 (5) | 0.0283 (6) | 0.0095 (4) | −0.0104 (4) | −0.0026 (4) | 0.0024 (4) |
| O2 | 0.0109 (5) | 0.0206 (5) | 0.0122 (4) | −0.0058 (4) | −0.0025 (4) | 0.0013 (4) |
| O3 | 0.0137 (5) | 0.0168 (5) | 0.0107 (4) | −0.0064 (4) | −0.0025 (4) | 0.0014 (4) |
| O4 | 0.0142 (5) | 0.0141 (5) | 0.0121 (4) | −0.0062 (4) | −0.0033 (4) | 0.0006 (4) |
| O5 | 0.0129 (5) | 0.0147 (5) | 0.0149 (5) | −0.0026 (4) | 0.0035 (4) | 0.0007 (4) |
| N1 | 0.0115 (5) | 0.0120 (5) | 0.0100 (5) | −0.0044 (4) | −0.0012 (4) | −0.0008 (4) |
| N2 | 0.0130 (6) | 0.0232 (6) | 0.0097 (5) | −0.0075 (5) | −0.0005 (4) | 0.0017 (4) |
| C1 | 0.0112 (6) | 0.0132 (6) | 0.0108 (6) | −0.0052 (5) | −0.0015 (5) | −0.0001 (5) |
| C2 | 0.0131 (6) | 0.0120 (6) | 0.0100 (6) | −0.0051 (5) | −0.0012 (5) | 0.0002 (5) |
| C3 | 0.0157 (6) | 0.0149 (6) | 0.0111 (6) | −0.0063 (5) | −0.0043 (5) | 0.0006 (5) |
| C4 | 0.0120 (6) | 0.0147 (6) | 0.0160 (6) | −0.0054 (5) | −0.0046 (5) | 0.0004 (5) |
| C5 | 0.0109 (6) | 0.0137 (6) | 0.0136 (6) | −0.0047 (5) | −0.0006 (5) | −0.0003 (5) |
| C6 | 0.0147 (6) | 0.0156 (6) | 0.0104 (6) | −0.0076 (5) | −0.0006 (5) | −0.0013 (5) |
| C7 | 0.0141 (6) | 0.0165 (6) | 0.0142 (6) | −0.0066 (5) | −0.0034 (5) | −0.0004 (5) |
| C8 | 0.0104 (6) | 0.0108 (6) | 0.0119 (6) | −0.0039 (5) | −0.0008 (5) | 0.0003 (4) |
| C9 | 0.0136 (6) | 0.0130 (6) | 0.0145 (6) | −0.0059 (5) | −0.0038 (5) | 0.0011 (5) |
| C10 | 0.0117 (6) | 0.0162 (6) | 0.0233 (7) | −0.0061 (5) | −0.0027 (5) | 0.0010 (5) |
| C11 | 0.0147 (7) | 0.0224 (7) | 0.0194 (7) | −0.0068 (6) | 0.0043 (5) | −0.0015 (6) |
| C12 | 0.0205 (7) | 0.0244 (7) | 0.0127 (6) | −0.0086 (6) | 0.0010 (5) | −0.0037 (5) |
| C13 | 0.0121 (6) | 0.0113 (6) | 0.0115 (6) | −0.0060 (5) | −0.0010 (5) | −0.0012 (5) |
| Ni1—O4 | 2.0925 (10) | C2—C3 | 1.3913 (19) |
| Ni1—O4i | 2.0925 (10) | C2—C6 | 1.5012 (18) |
| Ni1—O5 | 2.0658 (10) | C3—C4 | 1.3871 (19) |
| Ni1—O5i | 2.0658 (10) | C3—H3 | 0.9300 |
| Ni1—N1 | 2.0834 (11) | C4—C5 | 1.3841 (19) |
| Ni1—N1i | 2.0834 (11) | C4—H4 | 0.9300 |
| O1—C6 | 1.2346 (17) | C5—H5 | 0.9300 |
| O2—C13 | 1.2507 (17) | C7—C12 | 1.383 (2) |
| O3—C13 | 1.2728 (16) | C7—C8 | 1.3894 (19) |
| O4—H4A | 0.887 (16) | C7—H9' | 0.9300 |
| O4—H4B | 0.887 (16) | C8—C9 | 1.3963 (19) |
| O5—H5B | 0.887 (16) | C8—C13 | 1.5088 (18) |
| O5—H5A | 0.887 (15) | C9—C10 | 1.383 (2) |
| N1—C1 | 1.3427 (17) | C9—H9 | 0.9300 |
| N1—C5 | 1.3474 (18) | C10—C11 | 1.386 (2) |
| N2—C6 | 1.3350 (18) | C10—H10 | 0.9300 |
| N2—H2A | 0.8600 | C11—C12 | 1.387 (2) |
| N2—H2B | 0.8600 | C11—H11 | 0.9300 |
| C1—C2 | 1.3924 (18) | C12—H12 | 0.9300 |
| C1—H1 | 0.9300 | ||
| O4—Ni1—O4i | 180.0 | C4—C3—C2 | 118.59 (12) |
| O5—Ni1—O4 | 90.92 (4) | C4—C3—H3 | 120.7 |
| O5i—Ni1—O4 | 89.08 (4) | C2—C3—H3 | 120.7 |
| O5—Ni1—O4i | 89.08 (4) | C5—C4—C3 | 119.22 (13) |
| O5i—Ni1—O4i | 90.92 (4) | C5—C4—H4 | 120.4 |
| O5i—Ni1—O5 | 180.0 | C3—C4—H4 | 120.4 |
| O5i—Ni1—N1 | 87.25 (4) | N1—C5—C4 | 122.81 (13) |
| O5—Ni1—N1 | 92.75 (4) | N1—C5—H5 | 118.6 |
| O5i—Ni1—N1i | 92.75 (4) | C4—C5—H5 | 118.6 |
| O5—Ni1—N1i | 87.25 (4) | O1—C6—N2 | 123.50 (13) |
| N1—Ni1—O4 | 86.98 (4) | O1—C6—C2 | 119.09 (13) |
| N1i—Ni1—O4 | 93.02 (4) | N2—C6—C2 | 117.41 (12) |
| N1—Ni1—O4i | 93.02 (4) | C12—C7—C8 | 122.85 (13) |
| N1i—Ni1—O4i | 86.98 (4) | C12—C7—H9' | 118.6 |
| N1—Ni1—N1i | 180.000 (1) | C8—C7—H9' | 118.6 |
| C1—N1—C5 | 117.73 (12) | C7—C8—C9 | 116.63 (12) |
| C1—N1—Ni1 | 121.30 (9) | C7—C8—C13 | 123.60 (12) |
| C5—N1—Ni1 | 120.73 (9) | C9—C8—C13 | 119.76 (12) |
| C6—N2—H2A | 120.0 | C10—C9—C8 | 121.97 (13) |
| C6—N2—H2B | 120.0 | C10—C9—H9 | 119.0 |
| H2A—N2—H2B | 120.0 | C8—C9—H9 | 119.0 |
| Ni1—O4—H4A | 122.6 (16) | C9—C10—C11 | 119.44 (14) |
| Ni1—O4—H4B | 106.3 (15) | C9—C10—H10 | 120.3 |
| H4A—O4—H4B | 106 (2) | C11—C10—H10 | 120.3 |
| Ni1—O5—H5B | 115.1 (15) | C10—C11—C12 | 120.41 (14) |
| Ni1—O5—H5A | 133.2 (15) | C10—C11—H11 | 119.8 |
| H5B—O5—H5A | 106 (2) | C12—C11—H11 | 119.8 |
| N1—C1—C2 | 123.02 (12) | C7—C12—C11 | 118.69 (14) |
| N1—C1—H1 | 118.5 | C7—C12—H12 | 120.7 |
| C2—C1—H1 | 118.5 | C11—C12—H12 | 120.7 |
| C3—C2—C1 | 118.63 (12) | O2—C13—O3 | 124.22 (12) |
| C3—C2—C6 | 118.92 (12) | O2—C13—C8 | 119.65 (12) |
| C1—C2—C6 | 122.44 (12) | O3—C13—C8 | 116.10 (12) |
| O5i—Ni1—N1—C1 | −139.82 (11) | C3—C4—C5—N1 | 0.2 (2) |
| O5—Ni1—N1—C1 | 40.18 (11) | C3—C2—C6—O1 | −19.6 (2) |
| O4—Ni1—N1—C1 | −50.59 (10) | C1—C2—C6—O1 | 159.27 (13) |
| O4i—Ni1—N1—C1 | 129.41 (10) | C3—C2—C6—N2 | 161.24 (13) |
| O5i—Ni1—N1—C5 | 45.93 (11) | C1—C2—C6—N2 | −19.8 (2) |
| O5—Ni1—N1—C5 | −134.07 (11) | C12—C7—C8—C9 | 0.3 (2) |
| O4—Ni1—N1—C5 | 135.16 (11) | C12—C7—C8—C13 | −178.58 (13) |
| O4i—Ni1—N1—C5 | −44.84 (11) | C7—C8—C9—C10 | −0.7 (2) |
| C5—N1—C1—C2 | 0.8 (2) | C13—C8—C9—C10 | 178.17 (12) |
| Ni1—N1—C1—C2 | −173.61 (10) | C8—C9—C10—C11 | 1.0 (2) |
| N1—C1—C2—C3 | −0.7 (2) | C9—C10—C11—C12 | −0.8 (2) |
| N1—C1—C2—C6 | −179.57 (12) | C8—C7—C12—C11 | −0.1 (2) |
| C1—C2—C3—C4 | 0.3 (2) | C10—C11—C12—C7 | 0.4 (2) |
| C6—C2—C3—C4 | 179.22 (12) | C7—C8—C13—O2 | 28.4 (2) |
| C2—C3—C4—C5 | −0.1 (2) | C9—C8—C13—O2 | −150.41 (13) |
| C1—N1—C5—C4 | −0.6 (2) | C7—C8—C13—O3 | −153.53 (13) |
| Ni1—N1—C5—C4 | 173.85 (10) | C9—C8—C13—O3 | 27.64 (18) |
| H··· | ||||
| N2—H2A···O1ii | 0.86 | 2.03 | 2.8875 (17) | 171 |
| N2—H2B···O2iii | 0.86 | 2.23 | 3.0654 (16) | 164 |
| O4—H4A···O3i | 0.89 (2) | 2.01 (3) | 2.8372 (15) | 155 (2) |
| O4—H4B···O3iv | 0.89 (2) | 1.87 (2) | 2.7288 (15) | 163 (2) |
| O5—H5A···O2iii | 0.89 (2) | 1.82 (2) | 2.7001 (15) | 175 (3) |
| O5—H5B···O3v | 0.89 (2) | 1.94 (2) | 2.7774 (15) | 157 (2) |
| C10—H10···O2iii | 0.93 | 2.52 | 3.339 (2) | 147 |
| C12—H12···F1vi | 0.93 | 2.51 | 3.4314 (19) | 173 |
Selected bond lengths (Å)
| Ni1—O4 | 2.0925 (10) |
| Ni1—O5 | 2.0658 (10) |
| Ni1—N1 | 2.0834 (11) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.03 | 2.8875 (17) | 171 |
| N2—H2 | 0.86 | 2.23 | 3.0654 (16) | 164 |
| O4—H4 | 0.887 (16) | 2.01 (3) | 2.8372 (15) | 155 (2) |
| O4—H4 | 0.887 (16) | 1.87 (2) | 2.7288 (15) | 163 (2) |
| O5—H5 | 0.887 (16) | 1.82 (2) | 2.7001 (15) | 175 (3) |
| O5—H5 | 0.887 (15) | 1.94 (2) | 2.7774 (15) | 157 (2) |
| C10—H10⋯O2ii | 0.93 | 2.52 | 3.339 (2) | 147 |
| C12—H12⋯F1vi | 0.93 | 2.51 | 3.4314 (19) | 173 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .