Literature DB >> 21578089

Tetra-aqua-bis(nicotinamide-κN)nickel(II) bis-(2-fluoro-benzoate).

Tuncer Hökelek, Hakan Dal, Barış Tercan, F Elif Ozbek, Hacali Necefoğlu.   

Abstract

The asymmetric unit of the title complex, [Ni(C(6)H(6)N(2)O)(2)(H(2)O)(4)](C(7)H(4)FO(2))(2), contains one-half of the complex cation with the Ni(II) atom located on an inversion center, and a 2-fluoro-benzoate (FB) counter-anion. The four O atoms in the equatorial plane around the Ni atom form a slightly distorted square-planar arrangement with an average Ni-O bond length of 2.079 Å, and the slightly distorted octa-hedral coordination is completed by the two N atoms of the nicotinamide (NA) ligands in the axial positions. The dihedral angle between the carboxyl group and the attached benzene ring is 28.28 (11)°, while the pyridine and benzene rings are oriented at a dihedral angle of 8.31 (4)°. In the crystal structure, O-H⋯O, N-H⋯O, C-H⋯O, and C-H⋯F hydrogen bonds link the mol-ecules into a three-dimensional network. π-π Contacts between the pyridine and benzene rings [centroid-centroid distance = 3.626 (1) Å] may further stabilize the crystal structure. The 2-fluoro-benzoate anion is disordered over two orientations, with an occupancy ratio of 0.85:0.15.

Entities:  

Year:  2009        PMID: 21578089      PMCID: PMC2970982          DOI: 10.1107/S1600536809040392

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶) and for the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (2009 ▶); Sertçelik et al. (2009 ▶).

Experimental

Crystal data

[Ni(C6H6N2O)2(H2O)4](C7H4FO2)2 M = 653.23 Triclinic, a = 7.2529 (1) Å b = 7.3315 (1) Å c = 14.3831 (3) Å α = 82.115 (2)° β = 77.332 (2)° γ = 63.664 (1)° V = 668.05 (2) Å3 Z = 1 Mo Kα radiation μ = 0.81 mm−1 T = 100 K 0.33 × 0.28 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.768, T max = 0.868 12196 measured reflections 3339 independent reflections 3241 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.071 S = 1.04 3339 reflections 221 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.70 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809040392/xu2610sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809040392/xu2610Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C6H6N2O)2(H2O)4](C7H4FO2)2Z = 1
Mr = 653.23F(000) = 338
Triclinic, P1Dx = 1.624 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2529 (1) ÅCell parameters from 9281 reflections
b = 7.3315 (1) Åθ = 2.9–28.5°
c = 14.3831 (3) ŵ = 0.81 mm1
α = 82.115 (2)°T = 100 K
β = 77.332 (2)°Block, blue
γ = 63.664 (1)°0.33 × 0.28 × 0.18 mm
V = 668.05 (2) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3339 independent reflections
Radiation source: fine-focus sealed tube3241 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 28.5°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.768, Tmax = 0.868k = −9→9
12196 measured reflectionsl = −19→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0351P)2 + 0.4742P] where P = (Fo2 + 2Fc2)/3
3339 reflections(Δ/σ)max < 0.001
221 parametersΔρmax = 0.55 e Å3
7 restraintsΔρmin = −0.70 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Ni10.50000.50000.50000.00977 (8)
F10.68826 (15)0.96457 (16)0.86081 (7)0.0165 (2)0.85
F1'0.3316 (12)0.9351 (12)0.6229 (2)0.0341 (16)0.15
O10.27958 (17)0.42766 (17)0.97115 (7)0.0185 (2)
O20.90572 (16)0.80284 (16)0.68605 (7)0.0151 (2)
O30.70091 (16)0.95073 (15)0.57688 (7)0.0139 (2)
O40.36327 (16)0.29566 (15)0.53691 (7)0.01338 (19)
H4A0.317 (4)0.256 (4)0.4950 (15)0.040 (6)*
H4B0.457 (3)0.184 (3)0.5609 (16)0.035 (6)*
O50.21175 (16)0.74407 (16)0.53176 (7)0.0165 (2)
H5A0.109 (3)0.771 (4)0.5817 (14)0.038 (6)*
H5B0.205 (4)0.863 (3)0.5056 (15)0.032 (6)*
N10.54874 (18)0.45933 (17)0.64030 (8)0.0115 (2)
N20.04456 (19)0.57587 (19)0.87183 (8)0.0159 (2)
H2A−0.05960.58810.91690.019*
H2B0.02390.61810.81460.019*
C10.3928 (2)0.4781 (2)0.71424 (9)0.0119 (2)
H10.26510.49630.70170.014*
C20.4136 (2)0.4717 (2)0.80876 (9)0.0120 (2)
C30.6051 (2)0.4424 (2)0.82775 (10)0.0138 (3)
H30.62410.43680.89010.017*
C40.7670 (2)0.4217 (2)0.75166 (10)0.0141 (3)
H40.89660.40220.76230.017*
C50.7335 (2)0.4306 (2)0.65972 (10)0.0132 (3)
H50.84320.41600.60920.016*
C60.2383 (2)0.4915 (2)0.89077 (10)0.0134 (3)
C70.5243 (2)0.9628 (2)0.83226 (10)0.0148 (3)
H9'0.64170.95670.85110.018*0.15
C80.5354 (2)0.9368 (2)0.73699 (9)0.0116 (2)
C90.3553 (2)0.9481 (2)0.71176 (10)0.0135 (3)
H90.35650.93290.64850.016*0.85
C100.1751 (2)0.9811 (2)0.77808 (11)0.0173 (3)
H100.05790.98590.75960.021*
C110.1708 (2)1.0070 (2)0.87229 (11)0.0204 (3)
H110.04951.03100.91700.025*
C120.3461 (2)0.9975 (2)0.90026 (11)0.0200 (3)
H120.34401.01410.96350.024*
C130.7298 (2)0.8941 (2)0.66226 (9)0.0114 (2)
U11U22U33U12U13U23
Ni10.00894 (12)0.01136 (12)0.00765 (12)−0.00371 (9)−0.00012 (8)−0.00058 (8)
F10.0127 (5)0.0252 (5)0.0127 (4)−0.0076 (4)−0.0042 (4)−0.0034 (4)
F1'0.030 (4)0.037 (4)0.036 (4)−0.016 (3)−0.006 (3)0.001 (3)
O10.0174 (5)0.0283 (6)0.0095 (4)−0.0104 (4)−0.0026 (4)0.0024 (4)
O20.0109 (5)0.0206 (5)0.0122 (4)−0.0058 (4)−0.0025 (4)0.0013 (4)
O30.0137 (5)0.0168 (5)0.0107 (4)−0.0064 (4)−0.0025 (4)0.0014 (4)
O40.0142 (5)0.0141 (5)0.0121 (4)−0.0062 (4)−0.0033 (4)0.0006 (4)
O50.0129 (5)0.0147 (5)0.0149 (5)−0.0026 (4)0.0035 (4)0.0007 (4)
N10.0115 (5)0.0120 (5)0.0100 (5)−0.0044 (4)−0.0012 (4)−0.0008 (4)
N20.0130 (6)0.0232 (6)0.0097 (5)−0.0075 (5)−0.0005 (4)0.0017 (4)
C10.0112 (6)0.0132 (6)0.0108 (6)−0.0052 (5)−0.0015 (5)−0.0001 (5)
C20.0131 (6)0.0120 (6)0.0100 (6)−0.0051 (5)−0.0012 (5)0.0002 (5)
C30.0157 (6)0.0149 (6)0.0111 (6)−0.0063 (5)−0.0043 (5)0.0006 (5)
C40.0120 (6)0.0147 (6)0.0160 (6)−0.0054 (5)−0.0046 (5)0.0004 (5)
C50.0109 (6)0.0137 (6)0.0136 (6)−0.0047 (5)−0.0006 (5)−0.0003 (5)
C60.0147 (6)0.0156 (6)0.0104 (6)−0.0076 (5)−0.0006 (5)−0.0013 (5)
C70.0141 (6)0.0165 (6)0.0142 (6)−0.0066 (5)−0.0034 (5)−0.0004 (5)
C80.0104 (6)0.0108 (6)0.0119 (6)−0.0039 (5)−0.0008 (5)0.0003 (4)
C90.0136 (6)0.0130 (6)0.0145 (6)−0.0059 (5)−0.0038 (5)0.0011 (5)
C100.0117 (6)0.0162 (6)0.0233 (7)−0.0061 (5)−0.0027 (5)0.0010 (5)
C110.0147 (7)0.0224 (7)0.0194 (7)−0.0068 (6)0.0043 (5)−0.0015 (6)
C120.0205 (7)0.0244 (7)0.0127 (6)−0.0086 (6)0.0010 (5)−0.0037 (5)
C130.0121 (6)0.0113 (6)0.0115 (6)−0.0060 (5)−0.0010 (5)−0.0012 (5)
Ni1—O42.0925 (10)C2—C31.3913 (19)
Ni1—O4i2.0925 (10)C2—C61.5012 (18)
Ni1—O52.0658 (10)C3—C41.3871 (19)
Ni1—O5i2.0658 (10)C3—H30.9300
Ni1—N12.0834 (11)C4—C51.3841 (19)
Ni1—N1i2.0834 (11)C4—H40.9300
O1—C61.2346 (17)C5—H50.9300
O2—C131.2507 (17)C7—C121.383 (2)
O3—C131.2728 (16)C7—C81.3894 (19)
O4—H4A0.887 (16)C7—H9'0.9300
O4—H4B0.887 (16)C8—C91.3963 (19)
O5—H5B0.887 (16)C8—C131.5088 (18)
O5—H5A0.887 (15)C9—C101.383 (2)
N1—C11.3427 (17)C9—H90.9300
N1—C51.3474 (18)C10—C111.386 (2)
N2—C61.3350 (18)C10—H100.9300
N2—H2A0.8600C11—C121.387 (2)
N2—H2B0.8600C11—H110.9300
C1—C21.3924 (18)C12—H120.9300
C1—H10.9300
O4—Ni1—O4i180.0C4—C3—C2118.59 (12)
O5—Ni1—O490.92 (4)C4—C3—H3120.7
O5i—Ni1—O489.08 (4)C2—C3—H3120.7
O5—Ni1—O4i89.08 (4)C5—C4—C3119.22 (13)
O5i—Ni1—O4i90.92 (4)C5—C4—H4120.4
O5i—Ni1—O5180.0C3—C4—H4120.4
O5i—Ni1—N187.25 (4)N1—C5—C4122.81 (13)
O5—Ni1—N192.75 (4)N1—C5—H5118.6
O5i—Ni1—N1i92.75 (4)C4—C5—H5118.6
O5—Ni1—N1i87.25 (4)O1—C6—N2123.50 (13)
N1—Ni1—O486.98 (4)O1—C6—C2119.09 (13)
N1i—Ni1—O493.02 (4)N2—C6—C2117.41 (12)
N1—Ni1—O4i93.02 (4)C12—C7—C8122.85 (13)
N1i—Ni1—O4i86.98 (4)C12—C7—H9'118.6
N1—Ni1—N1i180.000 (1)C8—C7—H9'118.6
C1—N1—C5117.73 (12)C7—C8—C9116.63 (12)
C1—N1—Ni1121.30 (9)C7—C8—C13123.60 (12)
C5—N1—Ni1120.73 (9)C9—C8—C13119.76 (12)
C6—N2—H2A120.0C10—C9—C8121.97 (13)
C6—N2—H2B120.0C10—C9—H9119.0
H2A—N2—H2B120.0C8—C9—H9119.0
Ni1—O4—H4A122.6 (16)C9—C10—C11119.44 (14)
Ni1—O4—H4B106.3 (15)C9—C10—H10120.3
H4A—O4—H4B106 (2)C11—C10—H10120.3
Ni1—O5—H5B115.1 (15)C10—C11—C12120.41 (14)
Ni1—O5—H5A133.2 (15)C10—C11—H11119.8
H5B—O5—H5A106 (2)C12—C11—H11119.8
N1—C1—C2123.02 (12)C7—C12—C11118.69 (14)
N1—C1—H1118.5C7—C12—H12120.7
C2—C1—H1118.5C11—C12—H12120.7
C3—C2—C1118.63 (12)O2—C13—O3124.22 (12)
C3—C2—C6118.92 (12)O2—C13—C8119.65 (12)
C1—C2—C6122.44 (12)O3—C13—C8116.10 (12)
O5i—Ni1—N1—C1−139.82 (11)C3—C4—C5—N10.2 (2)
O5—Ni1—N1—C140.18 (11)C3—C2—C6—O1−19.6 (2)
O4—Ni1—N1—C1−50.59 (10)C1—C2—C6—O1159.27 (13)
O4i—Ni1—N1—C1129.41 (10)C3—C2—C6—N2161.24 (13)
O5i—Ni1—N1—C545.93 (11)C1—C2—C6—N2−19.8 (2)
O5—Ni1—N1—C5−134.07 (11)C12—C7—C8—C90.3 (2)
O4—Ni1—N1—C5135.16 (11)C12—C7—C8—C13−178.58 (13)
O4i—Ni1—N1—C5−44.84 (11)C7—C8—C9—C10−0.7 (2)
C5—N1—C1—C20.8 (2)C13—C8—C9—C10178.17 (12)
Ni1—N1—C1—C2−173.61 (10)C8—C9—C10—C111.0 (2)
N1—C1—C2—C3−0.7 (2)C9—C10—C11—C12−0.8 (2)
N1—C1—C2—C6−179.57 (12)C8—C7—C12—C11−0.1 (2)
C1—C2—C3—C40.3 (2)C10—C11—C12—C70.4 (2)
C6—C2—C3—C4179.22 (12)C7—C8—C13—O228.4 (2)
C2—C3—C4—C5−0.1 (2)C9—C8—C13—O2−150.41 (13)
C1—N1—C5—C4−0.6 (2)C7—C8—C13—O3−153.53 (13)
Ni1—N1—C5—C4173.85 (10)C9—C8—C13—O327.64 (18)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1ii0.862.032.8875 (17)171
N2—H2B···O2iii0.862.233.0654 (16)164
O4—H4A···O3i0.89 (2)2.01 (3)2.8372 (15)155 (2)
O4—H4B···O3iv0.89 (2)1.87 (2)2.7288 (15)163 (2)
O5—H5A···O2iii0.89 (2)1.82 (2)2.7001 (15)175 (3)
O5—H5B···O3v0.89 (2)1.94 (2)2.7774 (15)157 (2)
C10—H10···O2iii0.932.523.339 (2)147
C12—H12···F1vi0.932.513.4314 (19)173
Table 1

Selected bond lengths (Å)

Ni1—O42.0925 (10)
Ni1—O52.0658 (10)
Ni1—N12.0834 (11)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.862.032.8875 (17)171
N2—H2B⋯O2ii0.862.233.0654 (16)164
O4—H4A⋯O3iii0.887 (16)2.01 (3)2.8372 (15)155 (2)
O4—H4B⋯O3iv0.887 (16)1.87 (2)2.7288 (15)163 (2)
O5—H5A⋯O2ii0.887 (16)1.82 (2)2.7001 (15)175 (3)
O5—H5B⋯O3v0.887 (15)1.94 (2)2.7774 (15)157 (2)
C10—H10⋯O2ii0.932.523.339 (2)147
C12—H12⋯F1vi0.932.513.4314 (19)173

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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