Literature DB >> 21579733

2-Amino-3-nitro-pyridinium perchlorate.

Samah Toumi Akriche, Mohamed Rzaigui, Noura Al-Hokbany, Refaat Mohamed Mahfouz.   

Abstract

The title compound, C(5)H(6)N(3)O(2) (+)·ClO(4) (-), is comprised of discrete perchlorate anions and 2-amino-3-nitro-pyridinium cations. The anion has a typical tetra-hedral geometry while the cation presents a nearly planar [maximum deviation = 0.007 (8) Å] pyridinium ring. Undulating [C(5)H(6)N(3)O(2) (+)](n) chains extending along the c-axis direction are linked via N-H⋯O hydrogen bonds. The cations are further connected to the anions by N-H⋯O hydrogen bonds and weak C-H⋯O inter-actions, leading to the formation of a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579733      PMCID: PMC2979774          DOI: 10.1107/S1600536810000425

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Akriche & Rzaigui (2000 ▶, 2009a ▶,b ▶,c ▶); Nicoud et al. (1997 ▶). For details of hydrogen bonding, see: Steiner & Saenger (1994 ▶). For bond lengths in related structures, see: Aakeröy et al. (1998 ▶); Messai et al. (2009 ▶).

Experimental

Crystal data

C5H6N3O2 +·ClO4 M = 239.58 Monoclinic, a = 5.888 (2) Å b = 18.342 (6) Å c = 9.170 (4) Å β = 116.61 (3)° V = 885.3 (6) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 293 K 0.29 × 0.25 × 0.21 mm

Data collection

Enraf–Nonius TurboCAD-4 diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.725, T max = 0.912 3574 measured reflections 2130 independent reflections 1109 reflections with I > 2σ(I) R int = 0.046 2 standard reflections every 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.189 S = 1.00 2130 reflections 136 parameters 66 restraints H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810000425/pv2249sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810000425/pv2249Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6N3O2+·ClO4F(000) = 488
Mr = 239.58Dx = 1.797 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 5.888 (2) Åθ = 9–11°
b = 18.342 (6) ŵ = 0.45 mm1
c = 9.170 (4) ÅT = 293 K
β = 116.61 (3)°Prism, colorless
V = 885.3 (6) Å30.29 × 0.25 × 0.21 mm
Z = 4
Enraf–Nonius TurboCAD-4 diffractometer1109 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.046
graphiteθmax = 28.0°, θmin = 2.2°
Non–profiled ω scansh = −7→7
Absorption correction: multi-scan (Blessing, 1995)k = −24→0
Tmin = 0.725, Tmax = 1.101l = −11→12
3574 measured reflections2 standard reflections every 120 min
2130 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.189H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.096P)2] where P = (Fo2 + 2Fc2)/3
2130 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.52 e Å3
66 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6409 (9)0.45343 (19)0.9234 (4)0.0967 (12)
O20.9810 (6)0.4058 (2)0.8940 (5)0.1130 (15)
O30.6657 (6)0.46634 (17)0.6814 (4)0.0750 (9)
O40.5876 (7)0.35339 (19)0.7581 (5)0.0970 (12)
N10.3798 (6)0.58877 (17)0.7702 (4)0.0563 (8)
H10.48360.56860.86020.068*
N20.7098 (6)0.6608 (2)0.7939 (4)0.0663 (10)
H2A0.80510.63810.88260.080*
H2B0.77200.69530.75920.080*
N30.3603 (7)0.73452 (18)0.4915 (4)0.0562 (9)
C10.4694 (7)0.6428 (2)0.7117 (4)0.0453 (9)
C20.2906 (7)0.67427 (18)0.5653 (4)0.0419 (8)
C30.0457 (7)0.6493 (2)0.4903 (5)0.0498 (9)
H3−0.07020.67050.39320.060*
C4−0.0302 (7)0.5927 (2)0.5582 (5)0.0544 (10)
H4−0.19570.57500.50770.065*
C50.1418 (9)0.5641 (2)0.6989 (5)0.0591 (11)
H50.09440.52650.74750.071*
O50.5840 (6)0.75060 (17)0.5457 (4)0.0767 (9)
O60.1928 (6)0.76632 (17)0.3776 (4)0.0757 (9)
Cl10.71827 (18)0.41956 (5)0.81544 (11)0.0530 (3)
U11U22U33U12U13U23
O10.161 (4)0.083 (2)0.076 (2)0.040 (2)0.079 (2)0.0169 (19)
O20.057 (2)0.133 (4)0.119 (3)0.022 (2)0.013 (2)0.029 (3)
O30.090 (2)0.078 (2)0.0663 (19)0.0100 (17)0.0439 (17)0.0197 (16)
O40.116 (3)0.066 (2)0.111 (3)−0.024 (2)0.052 (2)−0.009 (2)
N10.068 (2)0.0509 (19)0.0523 (19)0.0097 (18)0.0286 (17)0.0124 (16)
N20.048 (2)0.077 (3)0.065 (2)0.0020 (18)0.0174 (17)0.003 (2)
N30.064 (2)0.0459 (19)0.070 (2)0.0006 (18)0.040 (2)0.0018 (17)
C10.052 (2)0.044 (2)0.044 (2)0.0093 (17)0.0256 (18)−0.0033 (16)
C20.054 (2)0.0345 (17)0.048 (2)0.0019 (16)0.0320 (18)−0.0017 (15)
C30.051 (2)0.052 (2)0.046 (2)0.0064 (18)0.0219 (18)0.0028 (18)
C40.053 (2)0.055 (2)0.062 (3)−0.0066 (19)0.032 (2)−0.004 (2)
C50.078 (3)0.049 (2)0.065 (3)−0.006 (2)0.045 (2)0.000 (2)
O50.073 (2)0.067 (2)0.103 (2)−0.0138 (18)0.0520 (19)0.0072 (18)
O60.085 (2)0.064 (2)0.086 (2)0.0191 (18)0.0458 (19)0.0309 (18)
Cl10.0554 (6)0.0519 (6)0.0498 (6)0.0047 (5)0.0219 (4)0.0041 (5)
O1—Cl11.406 (3)N3—O61.216 (4)
O2—Cl11.406 (3)N3—O51.218 (4)
O3—Cl11.415 (3)N3—C21.448 (5)
O4—Cl11.407 (3)C1—C21.406 (5)
N1—C51.332 (5)C2—C31.369 (5)
N1—C11.343 (5)C3—C41.384 (5)
N1—H10.8600C3—H30.9300
N2—C11.313 (5)C4—C51.339 (6)
N2—H2A0.8600C4—H40.9300
N2—H2B0.8600C5—H50.9300
C5—N1—C1124.8 (3)C2—C3—C4120.3 (4)
C5—N1—H1117.6C2—C3—H3119.8
C1—N1—H1117.6C4—C3—H3119.8
C1—N2—H2A120.0C5—C4—C3118.0 (4)
C1—N2—H2B120.0C5—C4—H4121.0
H2A—N2—H2B120.0C3—C4—H4121.0
O6—N3—O5123.1 (3)N1—C5—C4121.0 (4)
O6—N3—C2118.5 (3)N1—C5—H5119.5
O5—N3—C2118.4 (3)C4—C5—H5119.5
N2—C1—N1118.1 (4)O2—Cl1—O1110.3 (3)
N2—C1—C2126.8 (4)O2—Cl1—O4109.2 (3)
N1—C1—C2115.1 (3)O1—Cl1—O4110.4 (2)
C3—C2—C1120.8 (3)O2—Cl1—O3108.4 (2)
C3—C2—N3118.4 (3)O1—Cl1—O3109.26 (19)
C1—C2—N3120.8 (4)O4—Cl1—O3109.2 (2)
C5—N1—C1—N2−179.1 (4)O6—N3—C2—C1−170.3 (3)
C5—N1—C1—C20.9 (5)O5—N3—C2—C110.0 (5)
N2—C1—C2—C3178.9 (3)C1—C2—C3—C40.3 (5)
N1—C1—C2—C3−1.1 (5)N3—C2—C3—C4−179.0 (3)
N2—C1—C2—N3−1.8 (6)C2—C3—C4—C50.7 (6)
N1—C1—C2—N3178.3 (3)C1—N1—C5—C40.1 (6)
O6—N3—C2—C39.0 (5)C3—C4—C5—N1−0.9 (6)
O5—N3—C2—C3−170.7 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.862.282.927 (5)133
N1—H1···O1i0.862.442.969 (5)121
N2—H2A···O2ii0.862.032.886 (5)173
N2—H2B···O50.862.042.633 (5)126
N2—H2B···O6iii0.862.322.917 (5)126
C5—H5···O3iv0.932.573.270 (5)133
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.862.282.927 (5)133
N1—H1⋯O1i0.862.442.969 (5)121
N2—H2A⋯O2ii0.862.032.886 (5)173
N2—H2B⋯O50.862.042.633 (5)126
N2—H2B⋯O6iii0.862.322.917 (5)126
C5—H5⋯O3iv0.932.573.270 (5)133

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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