| Literature DB >> 21579733 |
Samah Toumi Akriche, Mohamed Rzaigui, Noura Al-Hokbany, Refaat Mohamed Mahfouz.
Abstract
The title compound, C(5)H(6)N(3)O(2) (+)·ClO(4) (-), is comprised of discrete perchlorate anions and 2-amino-3-nitro-pyridinium cations. The anion has a typical tetra-hedral geometry while the cation presents a nearly planar [maximum deviation = 0.007 (8) Å] pyridinium ring. Undulating [C(5)H(6)N(3)O(2) (+)](n) chains extending along the c-axis direction are linked via N-H⋯O hydrogen bonds. The cations are further connected to the anions by N-H⋯O hydrogen bonds and weak C-H⋯O inter-actions, leading to the formation of a three-dimensional network.Entities:
Year: 2010 PMID: 21579733 PMCID: PMC2979774 DOI: 10.1107/S1600536810000425
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6N3O2+·ClO4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 9–11° | |
| µ = 0.45 mm−1 | |
| β = 116.61 (3)° | Prism, colorless |
| 0.29 × 0.25 × 0.21 mm | |
| Enraf–Nonius TurboCAD-4 diffractometer | 1109 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.0°, θmin = 2.2° |
| Non–profiled ω scans | |
| Absorption correction: multi-scan (Blessing, 1995) | |
| 3574 measured reflections | 2 standard reflections every 120 min |
| 2130 independent reflections | intensity decay: 1% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2130 reflections | (Δ/σ)max < 0.001 |
| 136 parameters | Δρmax = 0.52 e Å−3 |
| 66 restraints | Δρmin = −0.30 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.6409 (9) | 0.45343 (19) | 0.9234 (4) | 0.0967 (12) | |
| O2 | 0.9810 (6) | 0.4058 (2) | 0.8940 (5) | 0.1130 (15) | |
| O3 | 0.6657 (6) | 0.46634 (17) | 0.6814 (4) | 0.0750 (9) | |
| O4 | 0.5876 (7) | 0.35339 (19) | 0.7581 (5) | 0.0970 (12) | |
| N1 | 0.3798 (6) | 0.58877 (17) | 0.7702 (4) | 0.0563 (8) | |
| H1 | 0.4836 | 0.5686 | 0.8602 | 0.068* | |
| N2 | 0.7098 (6) | 0.6608 (2) | 0.7939 (4) | 0.0663 (10) | |
| H2A | 0.8051 | 0.6381 | 0.8826 | 0.080* | |
| H2B | 0.7720 | 0.6953 | 0.7592 | 0.080* | |
| N3 | 0.3603 (7) | 0.73452 (18) | 0.4915 (4) | 0.0562 (9) | |
| C1 | 0.4694 (7) | 0.6428 (2) | 0.7117 (4) | 0.0453 (9) | |
| C2 | 0.2906 (7) | 0.67427 (18) | 0.5653 (4) | 0.0419 (8) | |
| C3 | 0.0457 (7) | 0.6493 (2) | 0.4903 (5) | 0.0498 (9) | |
| H3 | −0.0702 | 0.6705 | 0.3932 | 0.060* | |
| C4 | −0.0302 (7) | 0.5927 (2) | 0.5582 (5) | 0.0544 (10) | |
| H4 | −0.1957 | 0.5750 | 0.5077 | 0.065* | |
| C5 | 0.1418 (9) | 0.5641 (2) | 0.6989 (5) | 0.0591 (11) | |
| H5 | 0.0944 | 0.5265 | 0.7475 | 0.071* | |
| O5 | 0.5840 (6) | 0.75060 (17) | 0.5457 (4) | 0.0767 (9) | |
| O6 | 0.1928 (6) | 0.76632 (17) | 0.3776 (4) | 0.0757 (9) | |
| Cl1 | 0.71827 (18) | 0.41956 (5) | 0.81544 (11) | 0.0530 (3) |
| O1 | 0.161 (4) | 0.083 (2) | 0.076 (2) | 0.040 (2) | 0.079 (2) | 0.0169 (19) |
| O2 | 0.057 (2) | 0.133 (4) | 0.119 (3) | 0.022 (2) | 0.013 (2) | 0.029 (3) |
| O3 | 0.090 (2) | 0.078 (2) | 0.0663 (19) | 0.0100 (17) | 0.0439 (17) | 0.0197 (16) |
| O4 | 0.116 (3) | 0.066 (2) | 0.111 (3) | −0.024 (2) | 0.052 (2) | −0.009 (2) |
| N1 | 0.068 (2) | 0.0509 (19) | 0.0523 (19) | 0.0097 (18) | 0.0286 (17) | 0.0124 (16) |
| N2 | 0.048 (2) | 0.077 (3) | 0.065 (2) | 0.0020 (18) | 0.0174 (17) | 0.003 (2) |
| N3 | 0.064 (2) | 0.0459 (19) | 0.070 (2) | 0.0006 (18) | 0.040 (2) | 0.0018 (17) |
| C1 | 0.052 (2) | 0.044 (2) | 0.044 (2) | 0.0093 (17) | 0.0256 (18) | −0.0033 (16) |
| C2 | 0.054 (2) | 0.0345 (17) | 0.048 (2) | 0.0019 (16) | 0.0320 (18) | −0.0017 (15) |
| C3 | 0.051 (2) | 0.052 (2) | 0.046 (2) | 0.0064 (18) | 0.0219 (18) | 0.0028 (18) |
| C4 | 0.053 (2) | 0.055 (2) | 0.062 (3) | −0.0066 (19) | 0.032 (2) | −0.004 (2) |
| C5 | 0.078 (3) | 0.049 (2) | 0.065 (3) | −0.006 (2) | 0.045 (2) | 0.000 (2) |
| O5 | 0.073 (2) | 0.067 (2) | 0.103 (2) | −0.0138 (18) | 0.0520 (19) | 0.0072 (18) |
| O6 | 0.085 (2) | 0.064 (2) | 0.086 (2) | 0.0191 (18) | 0.0458 (19) | 0.0309 (18) |
| Cl1 | 0.0554 (6) | 0.0519 (6) | 0.0498 (6) | 0.0047 (5) | 0.0219 (4) | 0.0041 (5) |
| O1—Cl1 | 1.406 (3) | N3—O6 | 1.216 (4) |
| O2—Cl1 | 1.406 (3) | N3—O5 | 1.218 (4) |
| O3—Cl1 | 1.415 (3) | N3—C2 | 1.448 (5) |
| O4—Cl1 | 1.407 (3) | C1—C2 | 1.406 (5) |
| N1—C5 | 1.332 (5) | C2—C3 | 1.369 (5) |
| N1—C1 | 1.343 (5) | C3—C4 | 1.384 (5) |
| N1—H1 | 0.8600 | C3—H3 | 0.9300 |
| N2—C1 | 1.313 (5) | C4—C5 | 1.339 (6) |
| N2—H2A | 0.8600 | C4—H4 | 0.9300 |
| N2—H2B | 0.8600 | C5—H5 | 0.9300 |
| C5—N1—C1 | 124.8 (3) | C2—C3—C4 | 120.3 (4) |
| C5—N1—H1 | 117.6 | C2—C3—H3 | 119.8 |
| C1—N1—H1 | 117.6 | C4—C3—H3 | 119.8 |
| C1—N2—H2A | 120.0 | C5—C4—C3 | 118.0 (4) |
| C1—N2—H2B | 120.0 | C5—C4—H4 | 121.0 |
| H2A—N2—H2B | 120.0 | C3—C4—H4 | 121.0 |
| O6—N3—O5 | 123.1 (3) | N1—C5—C4 | 121.0 (4) |
| O6—N3—C2 | 118.5 (3) | N1—C5—H5 | 119.5 |
| O5—N3—C2 | 118.4 (3) | C4—C5—H5 | 119.5 |
| N2—C1—N1 | 118.1 (4) | O2—Cl1—O1 | 110.3 (3) |
| N2—C1—C2 | 126.8 (4) | O2—Cl1—O4 | 109.2 (3) |
| N1—C1—C2 | 115.1 (3) | O1—Cl1—O4 | 110.4 (2) |
| C3—C2—C1 | 120.8 (3) | O2—Cl1—O3 | 108.4 (2) |
| C3—C2—N3 | 118.4 (3) | O1—Cl1—O3 | 109.26 (19) |
| C1—C2—N3 | 120.8 (4) | O4—Cl1—O3 | 109.2 (2) |
| C5—N1—C1—N2 | −179.1 (4) | O6—N3—C2—C1 | −170.3 (3) |
| C5—N1—C1—C2 | 0.9 (5) | O5—N3—C2—C1 | 10.0 (5) |
| N2—C1—C2—C3 | 178.9 (3) | C1—C2—C3—C4 | 0.3 (5) |
| N1—C1—C2—C3 | −1.1 (5) | N3—C2—C3—C4 | −179.0 (3) |
| N2—C1—C2—N3 | −1.8 (6) | C2—C3—C4—C5 | 0.7 (6) |
| N1—C1—C2—N3 | 178.3 (3) | C1—N1—C5—C4 | 0.1 (6) |
| O6—N3—C2—C3 | 9.0 (5) | C3—C4—C5—N1 | −0.9 (6) |
| O5—N3—C2—C3 | −170.7 (3) |
| H··· | ||||
| N1—H1···O1 | 0.86 | 2.28 | 2.927 (5) | 133 |
| N1—H1···O1i | 0.86 | 2.44 | 2.969 (5) | 121 |
| N2—H2A···O2ii | 0.86 | 2.03 | 2.886 (5) | 173 |
| N2—H2B···O5 | 0.86 | 2.04 | 2.633 (5) | 126 |
| N2—H2B···O6iii | 0.86 | 2.32 | 2.917 (5) | 126 |
| C5—H5···O3iv | 0.93 | 2.57 | 3.270 (5) | 133 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1 | 0.86 | 2.28 | 2.927 (5) | 133 |
| N1—H1⋯O1i | 0.86 | 2.44 | 2.969 (5) | 121 |
| N2—H2 | 0.86 | 2.03 | 2.886 (5) | 173 |
| N2—H2 | 0.86 | 2.04 | 2.633 (5) | 126 |
| N2—H2 | 0.86 | 2.32 | 2.917 (5) | 126 |
| C5—H5⋯O3iv | 0.93 | 2.57 | 3.270 (5) | 133 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .