| Literature DB >> 21582517 |
Samah Akriche1, Mohamed Rzaigui.
Abstract
In the non-centrosymetric title compound, C(5)H(6)N(3)O(2) (+)·C(2)HO(4) (-), the hydrogen oxalate anions form corrugated chains parallel to the c axis, linked by O-H⋯O hydrogen bonds. The 2-amino-3-nitro-pyridinium cations are anchored between theses chains by N-H⋯O and C-H⋯O hydrogen bonds and van der Waals and electrostatic inter-actions, creating a three-dimensional network.Entities:
Year: 2009 PMID: 21582517 PMCID: PMC2968971 DOI: 10.1107/S1600536809008666
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6N3O2+·C2HO4− | |
| Mo | |
| Orthorhombic, | Cell parameters from 25 reflections |
| θ = 9–11° | |
| µ = 0.15 mm−1 | |
| Rectangular prism, yellow | |
| 0.33 × 0.25 × 0.21 mm | |
| Enraf–Nonius Turbo CAD-4 diffractometer | |
| Radiation source: Enraf–Nonius FR590 | θmax = 28.0°, θmin = 2.7° |
| graphite | |
| Nonprofiled ω scans | |
| 2228 measured reflections | |
| 1190 independent reflections | 2 standard reflections every 120 min |
| 1003 reflections with | intensity decay: 1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 1190 reflections | Δρmax = 0.33 e Å−3 |
| 147 parameters | Δρmin = −0.20 e Å−3 |
| 1 restraint | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.053 (6) |
| Geometry. H atoms were treated as riding, with C—H = 0.93 A °, N—H = 0.86 A ° and
O—H = 0.82 A °, and with |
| Refinement. Refinement of |
| O1 | 0.18864 (12) | 0.6389 (3) | 0.4311 (2) | 0.0512 (5) | |
| O2 | 0.10055 (11) | 0.5552 (3) | 0.2423 (2) | 0.0408 (4) | |
| O3 | 0.05130 (11) | 0.5172 (3) | 0.6129 (2) | 0.0391 (4) | |
| H3 | 0.0051 | 0.5043 | 0.6593 | 0.059* | |
| O4 | −0.03139 (11) | 0.6833 (3) | 0.4481 (2) | 0.0494 (5) | |
| O5 | 0.49613 (12) | 0.5813 (3) | 0.1226 (3) | 0.0532 (5) | |
| O6 | 0.52023 (11) | 0.6750 (3) | −0.1071 (3) | 0.0545 (5) | |
| N1 | 0.23161 (12) | 0.5903 (3) | 0.0374 (3) | 0.0375 (5) | |
| H1 | 0.1920 | 0.5818 | 0.1065 | 0.045* | |
| N2 | 0.33259 (15) | 0.6060 (3) | 0.2291 (3) | 0.0462 (6) | |
| H2A | 0.2900 | 0.6012 | 0.2930 | 0.055* | |
| H2B | 0.3857 | 0.6133 | 0.2612 | 0.055* | |
| N3 | 0.47122 (12) | 0.6244 (3) | −0.0050 (3) | 0.0367 (5) | |
| C1 | 0.31649 (14) | 0.6020 (3) | 0.0827 (3) | 0.0321 (5) | |
| C2 | 0.37793 (14) | 0.6148 (3) | −0.0380 (3) | 0.0318 (5) | |
| C3 | 0.35201 (16) | 0.6188 (4) | −0.1871 (3) | 0.0363 (5) | |
| H3A | 0.3936 | 0.6300 | −0.2638 | 0.044* | |
| C4 | 0.26384 (17) | 0.6061 (4) | −0.2236 (3) | 0.0437 (6) | |
| H4 | 0.2452 | 0.6078 | −0.3241 | 0.052* | |
| C5 | 0.20572 (16) | 0.5911 (4) | −0.1078 (3) | 0.0421 (6) | |
| H5 | 0.1463 | 0.5811 | −0.1298 | 0.050* | |
| C6 | 0.11677 (14) | 0.5994 (3) | 0.3773 (3) | 0.0303 (5) | |
| C7 | 0.03636 (14) | 0.6065 (3) | 0.4838 (3) | 0.0302 (5) |
| O1 | 0.0315 (8) | 0.0930 (14) | 0.0292 (9) | −0.0146 (10) | −0.0004 (7) | −0.0040 (10) |
| O2 | 0.0286 (7) | 0.0684 (11) | 0.0254 (8) | −0.0040 (8) | 0.0007 (7) | −0.0037 (9) |
| O3 | 0.0300 (8) | 0.0618 (12) | 0.0256 (7) | 0.0005 (8) | 0.0063 (7) | 0.0065 (8) |
| O4 | 0.0346 (9) | 0.0660 (12) | 0.0475 (11) | 0.0110 (8) | 0.0040 (8) | 0.0115 (10) |
| O5 | 0.0342 (9) | 0.0727 (13) | 0.0528 (12) | 0.0094 (9) | −0.0082 (9) | 0.0076 (11) |
| O6 | 0.0330 (9) | 0.0779 (13) | 0.0526 (12) | −0.0118 (9) | 0.0125 (8) | −0.0050 (11) |
| N1 | 0.0243 (9) | 0.0522 (14) | 0.0361 (12) | −0.0015 (8) | 0.0039 (8) | −0.0004 (9) |
| N2 | 0.0317 (10) | 0.0773 (18) | 0.0296 (11) | −0.0022 (10) | 0.0002 (8) | 0.0046 (11) |
| N3 | 0.0259 (9) | 0.0401 (10) | 0.0440 (12) | 0.0007 (8) | 0.0035 (9) | −0.0039 (9) |
| C1 | 0.0271 (10) | 0.0372 (12) | 0.0319 (12) | −0.0008 (9) | 0.0024 (9) | 0.0020 (9) |
| C2 | 0.0252 (10) | 0.0356 (11) | 0.0347 (12) | 0.0013 (8) | 0.0024 (9) | −0.0014 (10) |
| C3 | 0.0352 (12) | 0.0427 (14) | 0.0311 (12) | 0.0002 (10) | 0.0057 (10) | −0.0004 (10) |
| C4 | 0.0407 (13) | 0.0592 (17) | 0.0311 (13) | 0.0026 (11) | −0.0038 (10) | −0.0018 (11) |
| C5 | 0.0271 (10) | 0.0585 (16) | 0.0406 (15) | 0.0020 (10) | −0.0049 (10) | −0.0044 (12) |
| C6 | 0.0279 (10) | 0.0391 (11) | 0.0240 (10) | −0.0029 (9) | 0.0015 (9) | 0.0033 (9) |
| C7 | 0.0263 (10) | 0.0382 (11) | 0.0261 (11) | −0.0040 (8) | −0.0003 (8) | −0.0026 (9) |
| O1—C6 | 1.226 (3) | N2—H2A | 0.8600 |
| O2—C6 | 1.252 (3) | N2—H2B | 0.8600 |
| O3—C7 | 1.314 (3) | N3—C2 | 1.455 (3) |
| O3—H3 | 0.8200 | C1—C2 | 1.420 (3) |
| O4—C7 | 1.205 (3) | C2—C3 | 1.372 (3) |
| O5—N3 | 1.223 (3) | C3—C4 | 1.387 (3) |
| O6—N3 | 1.221 (3) | C3—H3A | 0.9300 |
| N1—C5 | 1.338 (4) | C4—C5 | 1.356 (4) |
| N1—C1 | 1.358 (3) | C4—H4 | 0.9300 |
| N1—H1 | 0.8600 | C5—H5 | 0.9300 |
| N2—C1 | 1.313 (3) | C6—C7 | 1.545 (3) |
| C7—O3—H3 | 109.5 | C2—C3—C4 | 120.0 (2) |
| C5—N1—C1 | 124.2 (2) | C2—C3—H3A | 120.0 |
| C5—N1—H1 | 117.9 | C4—C3—H3A | 120.0 |
| C1—N1—H1 | 117.9 | C5—C4—C3 | 117.8 (2) |
| C1—N2—H2A | 120.0 | C5—C4—H4 | 121.1 |
| C1—N2—H2B | 120.0 | C3—C4—H4 | 121.1 |
| H2A—N2—H2B | 120.0 | N1—C5—C4 | 121.7 (2) |
| O6—N3—O5 | 123.8 (2) | N1—C5—H5 | 119.1 |
| O6—N3—C2 | 117.8 (2) | C4—C5—H5 | 119.1 |
| O5—N3—C2 | 118.5 (2) | O1—C6—O2 | 126.8 (2) |
| N2—C1—N1 | 117.9 (2) | O1—C6—C7 | 118.0 (2) |
| N2—C1—C2 | 127.6 (2) | O2—C6—C7 | 115.25 (19) |
| N1—C1—C2 | 114.5 (2) | O4—C7—O3 | 125.6 (2) |
| C3—C2—C1 | 121.8 (2) | O4—C7—C6 | 122.5 (2) |
| C3—C2—N3 | 118.2 (2) | O3—C7—C6 | 111.85 (19) |
| C1—C2—N3 | 120.0 (2) | ||
| C5—N1—C1—N2 | 177.8 (3) | C1—C2—C3—C4 | −1.3 (4) |
| C5—N1—C1—C2 | −0.2 (4) | N3—C2—C3—C4 | 178.7 (2) |
| N2—C1—C2—C3 | −176.6 (3) | C2—C3—C4—C5 | 0.4 (4) |
| N1—C1—C2—C3 | 1.2 (3) | C1—N1—C5—C4 | −0.7 (5) |
| N2—C1—C2—N3 | 3.3 (4) | C3—C4—C5—N1 | 0.6 (4) |
| N1—C1—C2—N3 | −178.8 (2) | O1—C6—C7—O4 | 134.2 (3) |
| O6—N3—C2—C3 | 14.8 (3) | O2—C6—C7—O4 | −45.0 (3) |
| O5—N3—C2—C3 | −165.1 (2) | O1—C6—C7—O3 | −46.9 (3) |
| O6—N3—C2—C1 | −165.2 (2) | O2—C6—C7—O3 | 133.9 (2) |
| O5—N3—C2—C1 | 15.0 (3) |
| H··· | ||||
| O3—H3···O2i | 0.82 | 1.82 | 2.632 (2) | 171 |
| N1—H1···O2 | 0.86 | 1.85 | 2.706 (3) | 175 |
| N2—H2A···O1 | 0.86 | 1.99 | 2.837 (3) | 170 |
| N2—H2B···O5 | 0.86 | 2.09 | 2.673 (3) | 124 |
| N2—H2B···O4ii | 0.86 | 2.51 | 3.188 (3) | 136 |
| C3—H3A···O5iii | 0.93 | 2.44 | 3.178 (3) | 136 |
| C4—H4···O1iv | 0.93 | 2.33 | 3.258 (3) | 174 |
| C5—H5···O6v | 0.93 | 2.57 | 3.262 (3) | 132 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H3⋯O2i | 0.82 | 1.82 | 2.632 (2) | 171 |
| N1—H1⋯O2 | 0.86 | 1.85 | 2.706 (3) | 175 |
| N2—H2 | 0.86 | 1.99 | 2.837 (3) | 170 |
| N2—H2 | 0.86 | 2.09 | 2.673 (3) | 124 |
| N2—H2 | 0.86 | 2.51 | 3.188 (3) | 136 |
| C3—H3 | 0.93 | 2.44 | 3.178 (3) | 136 |
| C4—H4⋯O1iv | 0.93 | 2.33 | 3.258 (3) | 174 |
| C5—H5⋯O6v | 0.93 | 2.57 | 3.262 (3) | 132 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .