Literature DB >> 21579328

2-Amino-3-nitro-pyridinium perrhenate.

Zeid Abdellah Al Othman, Samah Toumi Akriche, Mohamed Rzaigui, Refaat Mohamed Mahfouz.   

Abstract

In the title mol-ecular salt, (C(5)H(6)N(3)O(2))[ReO(4)], the cations and tetrahedral anions are linked by trifurcated N-H⋯(O,O,O) and bifurcated N-H⋯(O,O) hydrogen bonds, as well as weak C-H⋯O inter-actions. This results in alternating corrugated inorganic and organic layers in the crystal.

Entities:  

Year:  2010        PMID: 21579328      PMCID: PMC2979616          DOI: 10.1107/S160053681001812X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen-bond inter­actions see: Katayev et al. (2006 ▶). For related structures containing 2-amino-3-nitro­pyridinium cations, see: Akriche & Rzaigui (2000 ▶, 2009 ▶); Toumi Akriche et al. (2010 ▶). For related structures containing perrhenate anions, see: Rodrigues et al. (2009 ▶); Ray et al. (2002 ▶, 2003 ▶). For distortion indices, see: Baur (1974 ▶).

Experimental

Crystal data

(C5H6N3O2)[ReO4] M = 390.33 Monoclinic, a = 6.235 (3) Å b = 22.030 (2) Å c = 7.840 (6) Å β = 117.52 (5)° V = 955.0 (9) Å3 Z = 4 Ag Kα radiation λ = 0.56087 Å μ = 6.86 mm−1 T = 293 K 0.50 × 0.40 × 0.30 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.054, T max = 0.134 7565 measured reflections 4682 independent reflections 3532 reflections with I > 2σ(I) R int = 0.027 2 standard reflections every 120 min intensity decay: 4%

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.111 S = 1.07 4682 reflections 137 parameters 24 restraints H-atom parameters constrained Δρmax = 2.71 e Å−3 Δρmin = −2.35 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681001812X/hb5451sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681001812X/hb5451Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H6N3O2)[ReO4]F(000) = 720
Mr = 390.33Dx = 2.715 Mg m3
Monoclinic, P21/cAg Kα radiation, λ = 0.56087 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 6.235 (3) Åθ = 9–11°
b = 22.030 (2) ŵ = 6.86 mm1
c = 7.840 (6) ÅT = 293 K
β = 117.52 (5)°Prism, yellow
V = 955.0 (9) Å30.50 × 0.40 × 0.30 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer3532 reflections with I > 2σ(I)
Radiation source: Enraf–Nonius FR590Rint = 0.027
graphiteθmax = 28.0°, θmin = 2.4°
non–profiled ω scansh = −10→10
Absorption correction: multi-scan (Blessing, 1995)k = −36→0
Tmin = 0.054, Tmax = 0.134l = −12→13
7565 measured reflections2 standard reflections every 120 min
4682 independent reflections intensity decay: 4%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.052P)2 + 2.5911P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.037
4682 reflectionsΔρmax = 2.71 e Å3
137 parametersΔρmin = −2.35 e Å3
24 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.033 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Re10.71309 (5)0.940210 (14)0.25037 (4)0.03320 (12)
O10.5590 (13)0.9742 (3)0.3597 (10)0.0450 (14)
O20.9536 (13)0.9832 (4)0.2759 (11)0.0544 (17)
O30.8207 (16)0.8717 (4)0.3586 (14)0.062 (2)
O40.5164 (14)0.9265 (4)0.0220 (10)0.0568 (19)
O50.2048 (17)0.7952 (4)0.6686 (16)0.073 (2)
O60.453 (2)0.7369 (5)0.8873 (17)0.088 (3)
N10.7550 (13)0.9105 (4)0.7469 (10)0.0400 (14)
H10.73660.94430.68670.048*
N20.3526 (15)0.8922 (3)0.5588 (11)0.0427 (15)
H2A0.33780.92640.50190.051*
H2B0.22880.86900.52600.051*
N30.4105 (19)0.7821 (4)0.7905 (14)0.053 (2)
C10.5584 (15)0.8757 (3)0.6920 (11)0.0338 (13)
C20.6059 (16)0.8218 (4)0.8141 (13)0.0386 (14)
C30.8316 (19)0.8088 (4)0.9565 (15)0.050 (2)
H30.85780.77331.02800.060*
C41.0226 (19)0.8481 (6)0.9954 (18)0.058 (3)
H41.17690.84021.09370.070*
C50.9753 (18)0.8982 (5)0.8848 (15)0.050 (2)
H51.10090.92480.90590.060*
U11U22U33U12U13U23
Re10.03010 (15)0.03753 (17)0.03126 (16)−0.00110 (11)0.01359 (11)−0.00198 (11)
O10.057 (4)0.041 (3)0.045 (3)−0.001 (3)0.030 (3)−0.002 (3)
O20.040 (3)0.067 (5)0.055 (4)−0.007 (3)0.022 (3)0.008 (3)
O30.062 (5)0.046 (4)0.076 (6)0.010 (3)0.030 (4)0.017 (4)
O40.044 (4)0.078 (5)0.039 (3)0.001 (3)0.012 (3)−0.019 (3)
O50.057 (5)0.057 (5)0.090 (7)−0.021 (4)0.021 (4)0.005 (5)
O60.090 (7)0.059 (6)0.103 (8)−0.012 (5)0.034 (6)0.036 (5)
N10.041 (3)0.037 (3)0.046 (4)−0.001 (2)0.023 (3)0.006 (3)
N20.046 (4)0.035 (3)0.037 (3)−0.001 (3)0.010 (3)0.006 (3)
N30.064 (5)0.031 (3)0.064 (5)−0.004 (3)0.029 (4)0.003 (3)
C10.039 (3)0.028 (3)0.034 (3)−0.001 (2)0.017 (3)−0.003 (2)
C20.044 (4)0.028 (3)0.046 (4)0.003 (3)0.023 (3)0.002 (3)
C30.054 (5)0.038 (4)0.057 (5)0.014 (3)0.024 (4)0.017 (4)
C40.041 (4)0.062 (6)0.066 (6)0.009 (4)0.021 (4)0.016 (5)
C50.040 (4)0.057 (5)0.052 (5)−0.001 (4)0.020 (4)0.008 (4)
Re1—O11.726 (6)C2—C31.363 (13)
Re1—O21.706 (7)C2—N31.441 (12)
Re1—O31.708 (8)C2—C11.466 (11)
Re1—O41.665 (7)O5—N31.228 (14)
N1—C51.325 (12)N3—O61.206 (12)
N1—C11.338 (11)C3—C41.387 (16)
N1—H10.8600C3—H30.9300
N2—C11.277 (11)C5—C41.350 (15)
N2—H2A0.8600C5—H50.9300
N2—H2B0.8600C4—H40.9300
O4—Re1—O2113.4 (4)N2—C1—N1121.7 (8)
O4—Re1—O3107.4 (4)N2—C1—C2126.0 (8)
O2—Re1—O3108.1 (4)N1—C1—C2112.1 (7)
O4—Re1—O1108.1 (4)C3—C2—N3118.0 (8)
O2—Re1—O1111.2 (4)C3—C2—C1121.8 (8)
O3—Re1—O1108.5 (4)N3—C2—C1120.3 (8)
C5—N1—C1126.5 (8)C2—C3—C4120.3 (9)
C5—N1—H1116.8C2—C3—H3119.9
C1—N1—H1116.8C4—C3—H3119.9
C1—N2—H2A120.0C5—C4—C3117.3 (10)
C1—N2—H2B120.0C5—C4—H4121.3
H2A—N2—H2B120.0C3—C4—H4121.3
O6—N3—O5122.0 (10)N1—C5—C4121.9 (10)
O6—N3—C2119.7 (10)N1—C5—H5119.1
O5—N3—C2118.3 (8)C4—C5—H5119.1
C3—C2—N3—O6−4.7 (15)C2—C3—C4—C5−1.3 (17)
C1—C2—N3—O6177.5 (10)C5—N1—C1—N2179.0 (9)
C3—C2—N3—O5176.6 (10)C5—N1—C1—C24.7 (12)
C1—C2—N3—O5−1.2 (14)C3—C2—C1—N2−178.3 (9)
N3—C2—C3—C4−174.9 (10)N3—C2—C1—N2−0.6 (13)
C1—C2—C3—C42.9 (15)C3—C2—C1—N1−4.3 (12)
C1—N1—C5—C4−3.5 (17)N3—C2—C1—N1173.5 (8)
N1—C5—C4—C31.4 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.862.373.041 (10)135
N1—H1···O2i0.862.423.018 (10)128
N1—H1···O1ii0.862.483.077 (11)128
N2—H2A···O10.862.383.036 (10)133
N2—H2A···O1ii0.862.403.010 (10)129
N2—H2A···O2iii0.862.553.168 (11)129
N2—H2B···O50.862.022.624 (11)127
N2—H2B···O3iii0.862.262.976 (12)141
C3—H3···O5iv0.932.443.138 (12)132
C5—H5···O4v0.932.323.094 (13)141
C5—H5···O2i0.932.413.020 (13)123
Table 1

Selected bond lengths (Å)

Re1—O11.726 (6)
Re1—O21.706 (7)
Re1—O31.708 (8)
Re1—O41.665 (7)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.862.373.041 (10)135
N1—H1⋯O2i0.862.423.018 (10)128
N1—H1⋯O1ii0.862.483.077 (11)128
N2—H2A⋯O10.862.383.036 (10)133
N2—H2A⋯O1ii0.862.403.010 (10)129
N2—H2A⋯O2iii0.862.553.168 (11)129
N2—H2B⋯O50.862.022.624 (11)127
N2—H2B⋯O3iii0.862.262.976 (12)141
C3—H3⋯O5iv0.932.443.138 (12)132
C5—H5⋯O4v0.932.323.094 (13)141
C5—H5⋯O2i0.932.413.020 (13)123

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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