Literature DB >> 21582132

Creatinium perchlorate.

Amel Messai, Amani Direm, Nourredine Benali-Cherif, Dominique Luneau, Erwann Jeanneau.   

Abstract

The title compound, C(4)H(8)N(3)O(+)·ClO(4) (-), is built up from creatininium cations and perchlorate anions. Crystal cohesion and perchlorate stability are ensured by N-H⋯O hydrogen bonds that together with weak C-H⋯O inter-actions build up a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582132      PMCID: PMC2968575          DOI: 10.1107/S1600536809003171

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on organic–inorganic hybrid materials, see: Benali-Cherif et al. (2004 ▶); Hill (1998 ▶); Kagan et al. (1999 ▶). For a related structure, see: Cherouana et al. (2003 ▶); Berrah et al. (2005 ▶). For inter­pretation of the solution acidity effect on NMR chemical shifts, see: Kotsyubynskyy et al. (2004 ▶).

Experimental

Crystal data

C4H8N3O+·ClO4 M = 213.58 Monoclinic, a = 5.8023 (3) Å b = 20.7782 (13) Å c = 7.3250 (4) Å β = 107.947 (4)° V = 840.14 (8) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 293 (2) K 0.10 × 0.10 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 4080 measured reflections 1587 independent reflections 1209 reflections with I > 2σ(I) R int = 0.126

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.230 S = 1.05 1587 reflections 119 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.42 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK and DENZO (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809003171/dn2425sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003171/dn2425Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H8N3O+·ClO4F(000) = 440
Mr = 213.58Dx = 1.689 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4863 reflections
a = 5.8023 (3) Åθ = 2.0–26.0°
b = 20.7782 (13) ŵ = 0.45 mm1
c = 7.3250 (4) ÅT = 293 K
β = 107.947 (4)°Prism, colourless
V = 840.14 (8) Å30.10 × 0.10 × 0.10 mm
Z = 4
Nonius KappaCCD diffractometer1209 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.126
graphiteθmax = 26.0°, θmin = 2.0°
ω–θ scansh = −7→6
4080 measured reflectionsk = −23→25
1587 independent reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.230H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.139P)2 + 0.288P] where P = (Fo2 + 2Fc2)/3
1586 reflections(Δ/σ)max = 0.003
119 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O50.3264 (6)0.74385 (13)0.3068 (5)0.0803 (9)
N10.4969 (5)0.65462 (13)0.4848 (5)0.0623 (8)
H10.58990.64210.42020.075*
N20.5866 (6)0.57013 (14)0.7078 (6)0.0723 (10)
H2A0.56670.55220.80770.087*
H2B0.68000.55260.65080.087*
N30.3285 (5)0.65583 (13)0.7149 (4)0.0577 (8)
C20.4753 (6)0.62392 (16)0.6428 (5)0.0555 (8)
C30.2475 (8)0.6361 (2)0.8757 (6)0.0729 (11)
H3A0.26900.59050.89420.109*
H3B0.07930.64660.84910.109*
H3C0.34090.65810.98970.109*
C40.2340 (7)0.71236 (15)0.5973 (6)0.0622 (10)
H4A0.27970.75160.67130.075*
H4B0.05880.71060.54510.075*
C50.3498 (7)0.70880 (15)0.4411 (6)0.0628 (10)
Cl10.89960 (16)0.57125 (4)0.24596 (14)0.0599 (5)
O10.8635 (8)0.63394 (16)0.1663 (8)0.1392 (18)
O20.7200 (7)0.52990 (16)0.1320 (6)0.1017 (12)
O31.1298 (6)0.5496 (2)0.2543 (6)0.1112 (13)
O40.8863 (10)0.5762 (3)0.4326 (7)0.1394 (19)
U11U22U33U12U13U23
O50.105 (2)0.0604 (16)0.085 (2)−0.0036 (14)0.0420 (17)0.0152 (14)
N10.0699 (17)0.0527 (16)0.075 (2)−0.0020 (13)0.0384 (16)−0.0039 (14)
N20.082 (2)0.0549 (19)0.088 (2)0.0147 (14)0.0381 (19)0.0059 (15)
N30.0663 (16)0.0474 (15)0.0692 (19)0.0027 (13)0.0353 (14)0.0031 (13)
C20.0587 (18)0.0449 (16)0.066 (2)−0.0009 (14)0.0244 (16)−0.0049 (15)
C30.087 (3)0.064 (2)0.079 (3)0.008 (2)0.042 (2)0.0080 (19)
C40.074 (2)0.0415 (17)0.081 (3)0.0048 (15)0.0369 (19)0.0024 (15)
C50.072 (2)0.0421 (17)0.081 (3)−0.0083 (15)0.0334 (19)−0.0017 (16)
Cl10.0651 (7)0.0471 (6)0.0728 (7)0.0028 (3)0.0289 (5)−0.0067 (3)
O10.144 (3)0.0463 (18)0.198 (5)0.0036 (19)0.010 (3)0.017 (2)
O20.110 (2)0.074 (2)0.108 (3)−0.0300 (17)0.014 (2)0.0009 (17)
O30.088 (2)0.104 (3)0.155 (4)0.015 (2)0.058 (2)−0.016 (3)
O40.164 (4)0.187 (5)0.091 (3)0.029 (3)0.074 (3)−0.019 (3)
O5—C51.197 (5)C3—H3A0.9600
N1—C21.361 (4)C3—H3B0.9600
N1—C51.389 (5)C3—H3C0.9600
N1—H10.8600C4—C51.497 (6)
N2—C21.305 (4)C4—H4A0.9700
N2—H2A0.8600C4—H4B0.9700
N2—H2B0.8600Cl1—O31.393 (3)
N3—C21.312 (4)Cl1—O41.396 (4)
N3—C31.455 (5)Cl1—O21.409 (3)
N3—C41.460 (4)Cl1—O11.416 (4)
C2—N1—C5111.4 (3)H3B—C3—H3C109.5
C2—N1—H1124.3N3—C4—C5103.6 (3)
C5—N1—H1124.3N3—C4—H4A111.0
C2—N2—H2A120.0C5—C4—H4A111.0
C2—N2—H2B120.0N3—C4—H4B111.0
H2A—N2—H2B120.0C5—C4—H4B111.0
C2—N3—C3126.5 (3)H4A—C4—H4B109.0
C2—N3—C4110.0 (3)O5—C5—N1126.0 (4)
C3—N3—C4123.3 (3)O5—C5—C4129.3 (3)
N2—C2—N3126.6 (4)N1—C5—C4104.6 (3)
N2—C2—N1123.1 (3)O3—Cl1—O4108.8 (3)
N3—C2—N1110.3 (3)O3—Cl1—O2110.7 (3)
N3—C3—H3A109.5O4—Cl1—O2111.8 (3)
N3—C3—H3B109.5O3—Cl1—O1109.5 (3)
H3A—C3—H3B109.5O4—Cl1—O1106.8 (3)
N3—C3—H3C109.5O2—Cl1—O1109.2 (2)
H3A—C3—H3C109.5
D—H···AD—HH···AD···AD—H···A
N1—H1···O40.862.182.905 (5)142
N2—H2B···O40.862.333.044 (6)141
N2—H2A···O2i0.862.313.077 (6)148
N2—H2A···O2ii0.862.523.186 (5)136
N2—H2B···O3iii0.862.392.947 (5)123
C3—H3A···O2ii0.962.513.455 (5)168
C4—H4A···O1iv0.972.433.284 (5)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O40.862.182.905 (5)142
N2—H2B⋯O40.862.333.044 (6)141
N2—H2A⋯O2i0.862.313.077 (6)148
N2—H2A⋯O2ii0.862.523.186 (5)136
N2—H2B⋯O3iii0.862.392.947 (5)123
C3—H3A⋯O2ii0.962.513.455 (5)168
C4—H4A⋯O1iv0.972.433.284 (5)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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