Literature DB >> 22719409

2-Amino-3-carb-oxy-pyridinium perchlorate.

Fadila Berrah, Sofiane Bouacida, Hayet Anana, Thierry Roisnel.   

Abstract

The asymmetric unit includes two crystallographically independent equivalents of the title salt, C(6)H(7)N(2)O(2) (+)·ClO(4) (-). The cations and anions form separate layers alternating along the c axis, which are linked by N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds into a two-dimensional network parallel to (100). Further C-H⋯O contacts connect these layers, forming a three-dimensional network, in which R(4) (4)(20) rings and C(2) (2)(11) infinite chains can be identified.

Entities:  

Year:  2012        PMID: 22719409      PMCID: PMC3379211          DOI: 10.1107/S1600536812018922

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural studies of hybrid compounds of 2-amino­nicotinic acid, see: Akriche & Rzaigui (2007 ▶); Berrah et al. (2011a ▶,b ▶). For related perchlorate compounds, see: Toumi Akriche et al. (2010 ▶); Bendjeddou et al. (2003 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Grell et al. (1999 ▶).

Experimental

Crystal data

C6H7N2O2 +·ClO4 M = 238.59 Monoclinic, a = 17.3573 (12) Å b = 5.0800 (4) Å c = 21.6293 (17) Å β = 107.239 (2)° V = 1821.5 (2) Å3 Z = 8 Mo Kα radiation μ = 0.43 mm−1 T = 150 K 0.48 × 0.17 × 0.08 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2002 ▶) T min = 0.847, T max = 0.966 13822 measured reflections 4142 independent reflections 3305 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.110 S = 1.11 4142 reflections 273 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018922/ld2056sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018922/ld2056Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018922/ld2056Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N2O2+·ClO4F(000) = 976
Mr = 238.59Dx = 1.74 Mg m3
Monoclinic, P2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ycCell parameters from 3823 reflections
a = 17.3573 (12) Åθ = 2.5–27.4°
b = 5.0800 (4) ŵ = 0.43 mm1
c = 21.6293 (17) ÅT = 150 K
β = 107.239 (2)°Stick, colourless
V = 1821.5 (2) Å30.48 × 0.17 × 0.08 mm
Z = 8
Bruker APEXII diffractometer3305 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2002)h = −22→12
Tmin = 0.847, Tmax = 0.966k = −6→6
13822 measured reflectionsl = −27→28
4142 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0377P)2 + 1.7007P] where P = (Fo2 + 2Fc2)/3
4142 reflections(Δ/σ)max < 0.001
273 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl20.12456 (3)−0.07231 (11)−0.11690 (3)0.01685 (14)
Cl10.37576 (3)0.54151 (11)0.35382 (3)0.01875 (14)
O220.19785 (10)−0.2141 (4)−0.11310 (8)0.0251 (4)
O1B0.07544 (11)0.1702 (4)0.02704 (8)0.0275 (4)
H1B0.07860.0731−0.00240.041*
O420.09107 (12)−0.1755 (4)−0.06809 (9)0.0330 (5)
O210.42254 (13)0.6540 (4)0.31530 (9)0.0369 (5)
O310.35147 (11)0.2777 (3)0.33137 (9)0.0300 (4)
O410.30450 (11)0.6993 (4)0.34659 (8)0.0264 (4)
O2B0.18407 (11)−0.0563 (4)0.08267 (8)0.0282 (4)
O320.14319 (11)0.2034 (3)−0.10376 (9)0.0269 (4)
O2A0.31277 (11)0.5865 (4)0.15454 (8)0.0287 (4)
O110.42313 (11)0.5324 (4)0.42050 (8)0.0269 (4)
O1A0.42090 (11)0.3499 (4)0.20638 (8)0.0323 (5)
H1A0.41720.43520.23760.049*
O120.06824 (11)−0.1019 (4)−0.17999 (8)0.0274 (4)
N2A0.31083 (12)0.1811 (4)−0.01596 (9)0.0189 (4)
H2A0.27590.2114−0.05280.023*
N2B0.18027 (12)0.3604 (4)0.24939 (9)0.0198 (4)
H2B0.21370.33060.28690.024*
C3B0.18684 (14)0.2122 (4)0.19911 (11)0.0165 (5)
N1B0.24371 (13)0.0283 (4)0.21094 (9)0.0225 (5)
H11B0.27510.00610.24960.027*
H12B0.2492−0.06850.17990.027*
C2B0.13013 (14)0.2659 (4)0.13757 (11)0.0156 (5)
C2A0.36459 (14)0.2707 (5)0.09571 (11)0.0166 (5)
N1A0.24775 (12)0.5022 (4)0.02580 (9)0.0204 (4)
H11A0.21450.5237−0.01220.025*
H12A0.24320.59620.05760.025*
C3A0.30586 (14)0.3245 (4)0.03538 (11)0.0160 (5)
C5A0.42317 (15)−0.0621 (5)0.04338 (12)0.0239 (5)
H5A0.4618−0.19150.04570.029*
C6A0.42192 (15)0.0799 (5)0.09851 (12)0.0213 (5)
H6A0.46050.04470.13780.026*
C4A0.36681 (15)−0.0065 (5)−0.01335 (12)0.0223 (5)
H4A0.3666−0.0978−0.05070.027*
C6B0.07394 (14)0.4623 (5)0.13287 (11)0.0200 (5)
H6B0.03730.49910.09270.024*
C1A0.36249 (15)0.4192 (5)0.15434 (11)0.0199 (5)
C1B0.13334 (15)0.1106 (5)0.08066 (11)0.0183 (5)
C4B0.12476 (15)0.5518 (5)0.24461 (12)0.0229 (5)
H4B0.12380.64560.28130.027*
C5B0.07058 (15)0.6081 (5)0.18698 (12)0.0222 (5)
H5B0.03220.73960.18330.027*
U11U22U33U12U13U23
Cl20.0180 (3)0.0159 (3)0.0166 (3)0.0000 (2)0.0052 (2)−0.0011 (2)
Cl10.0213 (3)0.0159 (3)0.0199 (3)−0.0054 (2)0.0074 (2)−0.0038 (2)
O220.0216 (9)0.0260 (10)0.0251 (9)0.0067 (7)0.0028 (7)−0.0018 (7)
O1B0.0229 (10)0.0384 (11)0.0194 (9)0.0070 (8)0.0036 (7)−0.0085 (8)
O420.0463 (12)0.0321 (11)0.0289 (10)−0.0153 (9)0.0242 (9)−0.0079 (8)
O210.0472 (13)0.0380 (12)0.0356 (11)−0.0184 (10)0.0275 (10)−0.0084 (9)
O310.0327 (11)0.0164 (9)0.0365 (11)−0.0060 (8)0.0034 (9)−0.0079 (8)
O410.0268 (10)0.0233 (9)0.0271 (9)0.0037 (8)0.0050 (8)−0.0032 (8)
O2B0.0348 (11)0.0259 (10)0.0228 (9)0.0121 (8)0.0067 (8)−0.0040 (8)
O320.0322 (11)0.0143 (9)0.0295 (10)0.0002 (7)0.0019 (8)−0.0008 (7)
O2A0.0334 (11)0.0286 (10)0.0225 (9)0.0122 (8)0.0058 (8)−0.0031 (8)
O110.0237 (10)0.0305 (10)0.0227 (9)−0.0036 (8)0.0013 (7)−0.0032 (8)
O1A0.0249 (10)0.0511 (13)0.0176 (9)0.0117 (9)0.0010 (8)−0.0044 (9)
O120.0232 (9)0.0331 (11)0.0214 (9)0.0054 (8)−0.0005 (7)−0.0064 (8)
N2A0.0215 (11)0.0188 (10)0.0156 (9)0.0020 (8)0.0044 (8)0.0008 (8)
N2B0.0230 (11)0.0192 (10)0.0165 (9)−0.0029 (8)0.0047 (8)−0.0026 (8)
C3B0.0185 (12)0.0137 (11)0.0182 (11)−0.0045 (9)0.0071 (9)−0.0022 (9)
N1B0.0279 (12)0.0187 (10)0.0182 (10)0.0048 (9)0.0024 (8)−0.0005 (8)
C2B0.0167 (12)0.0127 (10)0.0186 (11)−0.0040 (9)0.0071 (9)−0.0013 (9)
C2A0.0149 (12)0.0162 (11)0.0190 (11)−0.0007 (9)0.0055 (9)0.0020 (9)
N1A0.0227 (11)0.0177 (10)0.0178 (9)0.0073 (8)0.0012 (8)−0.0002 (8)
C3A0.0177 (12)0.0125 (10)0.0186 (11)−0.0025 (9)0.0067 (9)0.0012 (9)
C5A0.0213 (13)0.0204 (12)0.0326 (13)0.0071 (10)0.0120 (11)0.0006 (11)
C6A0.0187 (12)0.0225 (12)0.0222 (12)0.0015 (10)0.0050 (10)0.0044 (10)
C4A0.0267 (13)0.0174 (12)0.0260 (12)0.0003 (10)0.0127 (10)−0.0035 (10)
C6B0.0179 (12)0.0187 (12)0.0230 (11)−0.0025 (10)0.0053 (9)−0.0005 (10)
C1A0.0219 (13)0.0201 (12)0.0176 (11)−0.0015 (10)0.0056 (10)0.0014 (9)
C1B0.0201 (12)0.0169 (12)0.0183 (11)−0.0018 (10)0.0062 (9)−0.0009 (9)
C4B0.0279 (14)0.0193 (12)0.0251 (12)−0.0043 (11)0.0135 (10)−0.0075 (10)
C5B0.0213 (13)0.0174 (12)0.0302 (13)0.0012 (10)0.0112 (11)−0.0047 (10)
Cl2—O121.4316 (17)C3B—C2B1.428 (3)
Cl2—O221.4427 (18)N1B—H11B0.86
Cl2—O421.4463 (18)N1B—H12B0.86
Cl2—O321.4466 (18)C2B—C6B1.378 (3)
Cl1—O111.4336 (17)C2B—C1B1.477 (3)
Cl1—O211.4427 (19)C2A—C6A1.378 (3)
Cl1—O411.4430 (18)C2A—C3A1.424 (3)
Cl1—O311.4451 (18)C2A—C1A1.485 (3)
O1B—C1B1.325 (3)N1A—C3A1.324 (3)
O1B—H1B0.82N1A—H11A0.86
O2B—C1B1.214 (3)N1A—H12A0.86
O2A—C1A1.212 (3)C5A—C4A1.353 (3)
O1A—C1A1.320 (3)C5A—C6A1.399 (3)
O1A—H1A0.82C5A—H5A0.93
N2A—C4A1.350 (3)C6A—H6A0.93
N2A—C3A1.352 (3)C4A—H4A0.93
N2A—H2A0.86C6B—C5B1.401 (3)
N2B—C4B1.351 (3)C6B—H6B0.93
N2B—C3B1.355 (3)C4B—C5B1.351 (3)
N2B—H2B0.86C4B—H4B0.93
C3B—N1B1.328 (3)C5B—H5B0.93
O12—Cl2—O22110.08 (10)C3A—C2A—C1A119.5 (2)
O12—Cl2—O42110.43 (12)C3A—N1A—H11A120
O22—Cl2—O42108.41 (12)C3A—N1A—H12A120
O12—Cl2—O32109.81 (11)H11A—N1A—H12A120
O22—Cl2—O32109.27 (11)N1A—C3A—N2A118.0 (2)
O42—Cl2—O32108.81 (11)N1A—C3A—C2A125.4 (2)
O11—Cl1—O21109.92 (11)N2A—C3A—C2A116.5 (2)
O11—Cl1—O41110.16 (11)C4A—C5A—C6A118.4 (2)
O21—Cl1—O41109.17 (12)C4A—C5A—H5A120.8
O11—Cl1—O31109.34 (11)C6A—C5A—H5A120.8
O21—Cl1—O31109.36 (12)C2A—C6A—C5A121.2 (2)
O41—Cl1—O31108.87 (11)C2A—C6A—H6A119.4
C1B—O1B—H1B109.5C5A—C6A—H6A119.4
C1A—O1A—H1A109.5N2A—C4A—C5A120.2 (2)
C4A—N2A—C3A124.5 (2)N2A—C4A—H4A119.9
C4A—N2A—H2A117.8C5A—C4A—H4A119.9
C3A—N2A—H2A117.8C2B—C6B—C5B121.7 (2)
C4B—N2B—C3B124.5 (2)C2B—C6B—H6B119.2
C4B—N2B—H2B117.8C5B—C6B—H6B119.2
C3B—N2B—H2B117.8O2A—C1A—O1A123.5 (2)
N1B—C3B—N2B118.1 (2)O2A—C1A—C2A123.8 (2)
N1B—C3B—C2B125.6 (2)O1A—C1A—C2A112.7 (2)
N2B—C3B—C2B116.3 (2)O2B—C1B—O1B123.0 (2)
C3B—N1B—H11B120O2B—C1B—C2B123.3 (2)
C3B—N1B—H12B120O1B—C1B—C2B113.6 (2)
H11B—N1B—H12B120C5B—C4B—N2B120.6 (2)
C6B—C2B—C3B119.0 (2)C5B—C4B—H4B119.7
C6B—C2B—C1B121.7 (2)N2B—C4B—H4B119.7
C3B—C2B—C1B119.3 (2)C4B—C5B—C6B118.0 (2)
C6A—C2A—C3A119.1 (2)C4B—C5B—H5B121
C6A—C2A—C1A121.3 (2)C6B—C5B—H5B121
C4B—N2B—C3B—N1B−179.2 (2)C3A—N2A—C4A—C5A−0.1 (4)
C4B—N2B—C3B—C2B−0.3 (3)C6A—C5A—C4A—N2A−0.3 (4)
N1B—C3B—C2B—C6B179.4 (2)C3B—C2B—C6B—C5B−0.7 (4)
N2B—C3B—C2B—C6B0.7 (3)C1B—C2B—C6B—C5B179.5 (2)
N1B—C3B—C2B—C1B−0.8 (4)C6A—C2A—C1A—O2A−179.1 (2)
N2B—C3B—C2B—C1B−179.6 (2)C3A—C2A—C1A—O2A0.4 (4)
C4A—N2A—C3A—N1A−180.0 (2)C6A—C2A—C1A—O1A1.1 (3)
C4A—N2A—C3A—C2A0.2 (3)C3A—C2A—C1A—O1A−179.4 (2)
C6A—C2A—C3A—N1A−179.8 (2)C6B—C2B—C1B—O2B176.9 (2)
C1A—C2A—C3A—N1A0.7 (4)C3B—C2B—C1B—O2B−2.8 (4)
C6A—C2A—C3A—N2A0.0 (3)C6B—C2B—C1B—O1B−3.2 (3)
C1A—C2A—C3A—N2A−179.6 (2)C3B—C2B—C1B—O1B177.1 (2)
C3A—C2A—C6A—C5A−0.3 (4)C3B—N2B—C4B—C5B0.0 (4)
C1A—C2A—C6A—C5A179.2 (2)N2B—C4B—C5B—C6B0.0 (4)
C4A—C5A—C6A—C2A0.5 (4)C2B—C6B—C5B—C4B0.4 (4)
D—H···AD—HH···AD···AD—H···A
O1A—H1A···O210.821.992.810 (3)173
O1B—H1B···O420.821.962.779 (3)176
N2A—H2A···O320.862.242.968 (3)142
N2A—H2A···O41i0.862.413.004 (3)126
N2B—H2B···O310.862.313.005 (3)138
N2B—H2B···O410.862.543.057 (3)120
N2B—H2B···O22ii0.862.342.992 (3)133
N1A—H11A···O22iii0.862.503.211 (3)141
N1A—H11A···O320.862.583.231 (3)133
N1B—H11B···O310.862.323.000 (3)136
N1B—H11B···O41iv0.862.543.268 (3)143
N1A—H12A···O2A0.862.092.711 (3)129
N1A—H12A···O2Biii0.862.192.928 (3)144
N1B—H12B···O2Aiv0.862.222.971 (3)145
N1B—H12B···O2B0.862.072.693 (3)128
C4A—H4A···O11v0.932.573.312 (3)137
C4B—H4B···O32vi0.932.533.433 (3)165
C5A—H5A···O11vii0.932.373.277 (3)164
C5B—H5B···O12viii0.932.523.450 (3)177
C6A—H6A···O1A0.932.382.711 (3)100
C6B—H6B···O1B0.932.412.735 (3)100
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1A—H1A⋯O210.821.992.810 (3)173
O1B—H1B⋯O420.821.962.779 (3)176
N2A—H2A⋯O320.862.242.968 (3)142
N2B—H2B⋯O310.862.313.005 (3)138
N2B—H2B⋯O22i0.862.342.992 (3)133
N1A—H11A⋯O22ii0.862.503.211 (3)141
N1A—H11A⋯O320.862.583.231 (3)133
N1B—H11B⋯O310.862.323.000 (3)136
N1B—H11B⋯O41iii0.862.543.268 (3)143
N1A—H12A⋯O2Bii0.862.192.928 (3)144
N1B—H12B⋯O2Aiii0.862.222.971 (3)145
C4A—H4A⋯O11iv0.932.573.312 (3)137
C4B—H4B⋯O32v0.932.533.433 (3)165
C5A—H5A⋯O11vi0.932.373.277 (3)164
C5B—H5B⋯O12vii0.932.523.450 (3)177

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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