Literature DB >> 21582912

2-Amino-3-nitro-pyridinium hydrogen selenate.

Samah Akriche1, Mohamed Rzaigui.   

Abstract

The asymmetric unit of the title compound, C(5)H(6)N(3)O(2) (+)·n class="Chemical">HSeO(4) (-), contains two monoprotonated 2-amino-3-nitro-pyridinium cations and two hydrogen selenate anions which are connected through N-H⋯O and O-H⋯O hydrogen bonds, building chains parallel to the a direction. These chains are further connected to each other by weaker C-H⋯O hydrogen-bonding inter-actions, leading to the formation of a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582912      PMCID: PMC2969471          DOI: 10.1107/S1600536809022879

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Akriche et al. (2009 ▶); Fleck (2006 ▶); Le Fur, Masse & Nicoud (1998 ▶); Nicoud et al. (1997 ▶); Maalej et al. (2008 ▶).

Experimental

Crystal data

C5H6N3O2 +·HSeO4 M = 284.10 Monoclinic, a = 9.090 (3) Å b = 20.130 (2) Å c = 10.434 (4) Å β = 104.84 (2)° V = 1845.6 (10) Å3 Z = 8 Mo Kα radiation μ = 4.09 mm−1 T = 298 K 0.37 × 0.29 × 0.19 mm

Data collection

Enraf–Nonius Turbo-CAD-4 diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.145, T max = 0.298 (expected range = 0.224–0.460) 7325 measured reflections 4433 independent reflections 2980 reflections with I > 2σ(I) R int = 0.040 2 standard reflections frequency: 120 min intensity decay: 4%

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.112 S = 1.01 4433 reflections 274 parameters H-atom parameters constrained Δρmax = 0.80 e Å−3 Δρmin = −0.75 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and n class="Disease">DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022879/dn2458sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022879/dn2458Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6N3O2+·HO4SeF(000) = 1120
Mr = 284.10Dx = 2.045 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 9.090 (3) Åθ = 9–11°
b = 20.130 (2) ŵ = 4.09 mm1
c = 10.434 (4) ÅT = 298 K
β = 104.84 (2)°Prism, yellow
V = 1845.6 (10) Å30.37 × 0.29 × 0.19 mm
Z = 8
Enraf–Nonius Turbo-CAD-4 diffractometer2980 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.040
graphiteθmax = 28.0°, θmin = 2.0°
ω scansh = −11→11
Absorption correction: multi-scan (Blessing, 1995)k = 0→26
Tmin = 0.145, Tmax = 0.298l = −6→13
7325 measured reflections2 standard reflections every 120 min
4433 independent reflections intensity decay: 4%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.112w = 1/[σ2(Fo2) + (0.0549P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.001
4433 reflectionsΔρmax = 0.80 e Å3
274 parametersΔρmin = −0.75 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0106 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Se10.39573 (5)0.57437 (2)0.26743 (5)0.03205 (15)
Se20.88010 (5)0.61095 (2)0.28019 (5)0.02924 (14)
O10.4598 (4)0.65134 (18)0.2463 (5)0.0680 (13)
H10.55190.65300.27860.102*
O30.3344 (5)0.5426 (2)0.1228 (4)0.0756 (14)
O20.2627 (4)0.58545 (19)0.3409 (4)0.0576 (11)
O40.5374 (4)0.53198 (15)0.3555 (3)0.0411 (8)
O51.0304 (3)0.66505 (15)0.3064 (4)0.0401 (8)
H51.10910.64430.31090.060*
O60.7514 (3)0.65653 (16)0.3186 (4)0.0433 (8)
O70.9371 (4)0.54843 (15)0.3783 (3)0.0405 (8)
O80.8397 (4)0.58792 (17)0.1281 (3)0.0478 (9)
O90.4200 (5)0.2899 (2)−0.0205 (4)0.0656 (12)
O100.6241 (5)0.23103 (19)0.0156 (4)0.0672 (12)
O110.8828 (4)0.33319 (18)−0.0323 (4)0.0498 (9)
O121.0837 (4)0.27232 (16)−0.0052 (4)0.0503 (9)
N10.6363 (4)0.41805 (19)0.2743 (4)0.0361 (9)
H1A0.60100.45650.28690.043*
N20.4378 (4)0.4105 (2)0.0899 (4)0.0442 (10)
H2A0.40980.44940.10820.053*
H2B0.38620.38970.02110.053*
N30.5509 (5)0.2774 (2)0.0413 (5)0.0454 (10)
N41.1029 (4)0.44386 (17)0.2922 (4)0.0333 (9)
H41.07230.48210.31160.040*
N50.9152 (4)0.4497 (2)0.0988 (4)0.0413 (10)
H5A0.89140.48810.12360.050*
H5B0.86530.43350.02410.050*
N61.0111 (5)0.31667 (18)0.0290 (4)0.0348 (9)
C10.5601 (5)0.3828 (2)0.1677 (5)0.0337 (10)
C20.6231 (5)0.3199 (2)0.1535 (5)0.0339 (10)
C30.7524 (5)0.2982 (2)0.2424 (5)0.0400 (12)
H30.79220.25680.23030.048*
C40.8245 (5)0.3366 (3)0.3493 (5)0.0427 (12)
H4A0.91140.32140.41030.051*
C50.7647 (5)0.3970 (2)0.3629 (5)0.0381 (11)
H5C0.81200.42430.43330.046*
C61.0279 (5)0.4158 (2)0.1752 (4)0.0288 (9)
C71.0836 (5)0.3528 (2)0.1496 (4)0.0286 (9)
C81.2031 (5)0.3237 (2)0.2393 (5)0.0387 (11)
H81.23660.28190.22160.046*
C91.2739 (6)0.3557 (3)0.3550 (5)0.0443 (12)
H91.35620.33630.41500.053*
C101.2217 (5)0.4159 (2)0.3799 (5)0.0402 (11)
H101.26800.43820.45800.048*
U11U22U33U12U13U23
Se10.0214 (2)0.0312 (2)0.0401 (3)0.00508 (17)0.00162 (18)−0.0022 (2)
Se20.0249 (2)0.0232 (2)0.0358 (3)−0.00061 (17)0.00088 (18)−0.00011 (18)
O10.0320 (19)0.040 (2)0.129 (4)0.0059 (17)0.015 (2)0.030 (2)
O30.079 (3)0.075 (3)0.049 (3)0.045 (2)−0.026 (2)−0.021 (2)
O20.040 (2)0.055 (2)0.088 (3)0.0112 (18)0.034 (2)0.009 (2)
O40.0365 (17)0.0333 (17)0.045 (2)0.0110 (14)−0.0050 (15)−0.0029 (15)
O50.0281 (16)0.0327 (17)0.057 (2)−0.0049 (13)0.0061 (16)−0.0020 (16)
O60.0299 (17)0.0338 (17)0.066 (2)0.0023 (14)0.0125 (16)−0.0058 (17)
O70.0416 (18)0.0311 (16)0.048 (2)0.0056 (14)0.0099 (16)0.0142 (15)
O80.055 (2)0.0375 (18)0.041 (2)0.0050 (17)−0.0043 (17)−0.0050 (16)
O90.054 (2)0.061 (3)0.071 (3)−0.007 (2)−0.004 (2)−0.023 (2)
O100.084 (3)0.046 (2)0.074 (3)0.004 (2)0.026 (2)−0.023 (2)
O110.0348 (18)0.057 (2)0.050 (2)−0.0048 (17)−0.0036 (17)−0.0155 (18)
O120.066 (2)0.0294 (18)0.057 (2)0.0063 (17)0.018 (2)−0.0091 (16)
N10.037 (2)0.031 (2)0.038 (2)0.0060 (17)0.0050 (18)−0.0043 (18)
N20.039 (2)0.041 (2)0.046 (3)0.0080 (19)0.000 (2)−0.004 (2)
N30.055 (3)0.029 (2)0.055 (3)−0.006 (2)0.019 (2)−0.0050 (19)
N40.039 (2)0.0234 (17)0.032 (2)0.0039 (16)−0.0007 (17)−0.0015 (15)
N50.046 (2)0.036 (2)0.033 (2)0.0113 (18)−0.0072 (19)−0.0061 (17)
N60.043 (2)0.0291 (19)0.034 (2)−0.0076 (17)0.0117 (19)−0.0040 (16)
C10.033 (2)0.032 (2)0.037 (3)0.0022 (19)0.010 (2)0.003 (2)
C20.034 (2)0.031 (2)0.038 (3)−0.0001 (19)0.012 (2)0.000 (2)
C30.042 (3)0.027 (2)0.055 (3)0.008 (2)0.020 (2)0.007 (2)
C40.037 (3)0.047 (3)0.042 (3)0.009 (2)0.005 (2)0.014 (2)
C50.035 (2)0.041 (3)0.035 (3)0.002 (2)0.003 (2)−0.001 (2)
C60.032 (2)0.029 (2)0.023 (2)−0.0036 (18)0.0041 (19)0.0005 (18)
C70.035 (2)0.023 (2)0.029 (2)−0.0039 (17)0.0094 (19)−0.0007 (18)
C80.043 (3)0.027 (2)0.047 (3)0.006 (2)0.012 (2)0.005 (2)
C90.041 (3)0.045 (3)0.038 (3)0.013 (2)−0.005 (2)0.005 (2)
C100.044 (3)0.038 (3)0.031 (3)−0.003 (2)−0.005 (2)0.000 (2)
Se1—O31.602 (4)N4—C101.347 (5)
Se1—O21.604 (3)N4—C61.359 (5)
Se1—O41.620 (3)N4—H40.8600
Se1—O11.689 (4)N5—C61.316 (5)
Se2—O81.603 (3)N5—H5A0.8600
Se2—O61.616 (3)N5—H5B0.8600
Se2—O71.621 (3)N6—C71.456 (5)
Se2—O51.713 (3)C1—C21.412 (6)
O1—H10.8200C2—C31.369 (7)
O5—H50.8200C3—C41.377 (7)
O9—N31.225 (5)C3—H30.9300
O10—N31.216 (5)C4—C51.355 (7)
O11—N61.224 (5)C4—H4A0.9300
O12—N61.217 (5)C5—H5C0.9300
N1—C11.352 (6)C6—C71.417 (6)
N1—C51.357 (6)C7—C81.370 (6)
N1—H1A0.8600C8—C91.374 (7)
N2—C11.321 (6)C8—H80.9300
N2—H2A0.8600C9—C101.351 (7)
N2—H2B0.8600C9—H90.9300
N3—C21.463 (6)C10—H100.9300
O3—Se1—O2112.5 (2)O11—N6—C7118.4 (4)
O3—Se1—O4111.03 (18)N2—C1—N1117.2 (4)
O2—Se1—O4112.89 (19)N2—C1—C2127.9 (5)
O3—Se1—O1106.9 (3)N1—C1—C2114.9 (4)
O2—Se1—O1105.2 (2)C3—C2—C1121.1 (4)
O4—Se1—O1107.86 (17)C3—C2—N3119.1 (4)
O8—Se2—O6114.36 (18)C1—C2—N3119.8 (4)
O8—Se2—O7110.84 (17)C2—C3—C4121.1 (4)
O6—Se2—O7114.76 (17)C2—C3—H3119.4
O8—Se2—O5108.25 (19)C4—C3—H3119.4
O6—Se2—O5101.41 (16)C5—C4—C3117.9 (4)
O7—Se2—O5106.24 (17)C5—C4—H4A121.0
Se1—O1—H1109.5C3—C4—H4A121.0
Se2—O5—H5109.5C4—C5—N1120.4 (5)
C1—N1—C5124.5 (4)C4—C5—H5C119.8
C1—N1—H1A117.7N1—C5—H5C119.8
C5—N1—H1A117.7N5—C6—N4117.6 (4)
C1—N2—H2A120.0N5—C6—C7127.6 (4)
C1—N2—H2B120.0N4—C6—C7114.8 (4)
H2A—N2—H2B120.0C8—C7—C6120.8 (4)
O10—N3—O9123.6 (5)C8—C7—N6118.7 (4)
O10—N3—C2117.8 (4)C6—C7—N6120.4 (4)
O9—N3—C2118.6 (4)C7—C8—C9120.8 (4)
C10—N4—C6124.6 (4)C7—C8—H8119.6
C10—N4—H4117.7C9—C8—H8119.6
C6—N4—H4117.7C10—C9—C8118.7 (4)
C6—N5—H5A120.0C10—C9—H9120.6
C6—N5—H5B120.0C8—C9—H9120.6
H5A—N5—H5B120.0N4—C10—C9120.3 (4)
O12—N6—O11124.2 (4)N4—C10—H10119.9
O12—N6—C7117.5 (4)C9—C10—H10119.9
D—H···AD—HH···AD···AD—H···A
O1—H1···O60.821.752.565 (5)170
O5—H5···O2i0.821.802.601 (5)167
N1—H1A···O40.861.842.679 (5)166
N2—H2A···O30.862.022.870 (6)172
N2—H2B···O90.862.092.675 (6)124
N2—H2B···O8ii0.862.282.933 (5)133
N4—H4···O70.862.052.864 (5)157
N5—H5A···O80.862.072.900 (5)163
N5—H5B···O3ii0.862.112.798 (5)137
N5—H5B···O110.862.122.693 (5)124
C3—H3···O5iii0.932.543.443 (5)163
C4—H4A···O12iv0.932.473.290 (6)148
C8—H8···O6iii0.932.573.463 (6)162
C10—H10···O4v0.932.353.228 (6)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O60.821.752.565 (5)170
O5—H5⋯O2i0.821.802.601 (5)167
N1—H1A⋯O40.861.842.679 (5)166
N2—H2A⋯O30.862.022.870 (6)172
N2—H2B⋯O90.862.092.675 (6)124
N2—H2B⋯O8ii0.862.282.933 (5)133
N4—H4⋯O70.862.052.864 (5)157
N5—H5A⋯O80.862.072.900 (5)163
N5—H5B⋯O3ii0.862.112.798 (5)137
N5—H5B⋯O110.862.122.693 (5)124
C3—H3⋯O5iii0.932.543.443 (5)163
C4—H4A⋯O12iv0.932.473.290 (6)148
C8—H8⋯O6iii0.932.573.463 (6)162
C10—H10⋯O4v0.932.353.228 (6)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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