| Literature DB >> 21582912 |
Samah Akriche1, Mohamed Rzaigui.
Abstract
The asymmetric unit of the title compound, C(5)H(6)N(3)O(2) (+)·Entities:
Year: 2009 PMID: 21582912 PMCID: PMC2969471 DOI: 10.1107/S1600536809022879
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6N3O2+·HO4Se− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 9–11° | |
| µ = 4.09 mm−1 | |
| β = 104.84 (2)° | Prism, yellow |
| 0.37 × 0.29 × 0.19 mm | |
| Enraf–Nonius Turbo-CAD-4 diffractometer | 2980 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 28.0°, θmin = 2.0° |
| ω scans | |
| Absorption correction: multi-scan (Blessing, 1995) | |
| 7325 measured reflections | 2 standard reflections every 120 min |
| 4433 independent reflections | intensity decay: 4% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 4433 reflections | Δρmax = 0.80 e Å−3 |
| 274 parameters | Δρmin = −0.75 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0106 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Se1 | 0.39573 (5) | 0.57437 (2) | 0.26743 (5) | 0.03205 (15) | |
| Se2 | 0.88010 (5) | 0.61095 (2) | 0.28019 (5) | 0.02924 (14) | |
| O1 | 0.4598 (4) | 0.65134 (18) | 0.2463 (5) | 0.0680 (13) | |
| H1 | 0.5519 | 0.6530 | 0.2786 | 0.102* | |
| O3 | 0.3344 (5) | 0.5426 (2) | 0.1228 (4) | 0.0756 (14) | |
| O2 | 0.2627 (4) | 0.58545 (19) | 0.3409 (4) | 0.0576 (11) | |
| O4 | 0.5374 (4) | 0.53198 (15) | 0.3555 (3) | 0.0411 (8) | |
| O5 | 1.0304 (3) | 0.66505 (15) | 0.3064 (4) | 0.0401 (8) | |
| H5 | 1.1091 | 0.6443 | 0.3109 | 0.060* | |
| O6 | 0.7514 (3) | 0.65653 (16) | 0.3186 (4) | 0.0433 (8) | |
| O7 | 0.9371 (4) | 0.54843 (15) | 0.3783 (3) | 0.0405 (8) | |
| O8 | 0.8397 (4) | 0.58792 (17) | 0.1281 (3) | 0.0478 (9) | |
| O9 | 0.4200 (5) | 0.2899 (2) | −0.0205 (4) | 0.0656 (12) | |
| O10 | 0.6241 (5) | 0.23103 (19) | 0.0156 (4) | 0.0672 (12) | |
| O11 | 0.8828 (4) | 0.33319 (18) | −0.0323 (4) | 0.0498 (9) | |
| O12 | 1.0837 (4) | 0.27232 (16) | −0.0052 (4) | 0.0503 (9) | |
| N1 | 0.6363 (4) | 0.41805 (19) | 0.2743 (4) | 0.0361 (9) | |
| H1A | 0.6010 | 0.4565 | 0.2869 | 0.043* | |
| N2 | 0.4378 (4) | 0.4105 (2) | 0.0899 (4) | 0.0442 (10) | |
| H2A | 0.4098 | 0.4494 | 0.1082 | 0.053* | |
| H2B | 0.3862 | 0.3897 | 0.0211 | 0.053* | |
| N3 | 0.5509 (5) | 0.2774 (2) | 0.0413 (5) | 0.0454 (10) | |
| N4 | 1.1029 (4) | 0.44386 (17) | 0.2922 (4) | 0.0333 (9) | |
| H4 | 1.0723 | 0.4821 | 0.3116 | 0.040* | |
| N5 | 0.9152 (4) | 0.4497 (2) | 0.0988 (4) | 0.0413 (10) | |
| H5A | 0.8914 | 0.4881 | 0.1236 | 0.050* | |
| H5B | 0.8653 | 0.4335 | 0.0241 | 0.050* | |
| N6 | 1.0111 (5) | 0.31667 (18) | 0.0290 (4) | 0.0348 (9) | |
| C1 | 0.5601 (5) | 0.3828 (2) | 0.1677 (5) | 0.0337 (10) | |
| C2 | 0.6231 (5) | 0.3199 (2) | 0.1535 (5) | 0.0339 (10) | |
| C3 | 0.7524 (5) | 0.2982 (2) | 0.2424 (5) | 0.0400 (12) | |
| H3 | 0.7922 | 0.2568 | 0.2303 | 0.048* | |
| C4 | 0.8245 (5) | 0.3366 (3) | 0.3493 (5) | 0.0427 (12) | |
| H4A | 0.9114 | 0.3214 | 0.4103 | 0.051* | |
| C5 | 0.7647 (5) | 0.3970 (2) | 0.3629 (5) | 0.0381 (11) | |
| H5C | 0.8120 | 0.4243 | 0.4333 | 0.046* | |
| C6 | 1.0279 (5) | 0.4158 (2) | 0.1752 (4) | 0.0288 (9) | |
| C7 | 1.0836 (5) | 0.3528 (2) | 0.1496 (4) | 0.0286 (9) | |
| C8 | 1.2031 (5) | 0.3237 (2) | 0.2393 (5) | 0.0387 (11) | |
| H8 | 1.2366 | 0.2819 | 0.2216 | 0.046* | |
| C9 | 1.2739 (6) | 0.3557 (3) | 0.3550 (5) | 0.0443 (12) | |
| H9 | 1.3562 | 0.3363 | 0.4150 | 0.053* | |
| C10 | 1.2217 (5) | 0.4159 (2) | 0.3799 (5) | 0.0402 (11) | |
| H10 | 1.2680 | 0.4382 | 0.4580 | 0.048* |
| Se1 | 0.0214 (2) | 0.0312 (2) | 0.0401 (3) | 0.00508 (17) | 0.00162 (18) | −0.0022 (2) |
| Se2 | 0.0249 (2) | 0.0232 (2) | 0.0358 (3) | −0.00061 (17) | 0.00088 (18) | −0.00011 (18) |
| O1 | 0.0320 (19) | 0.040 (2) | 0.129 (4) | 0.0059 (17) | 0.015 (2) | 0.030 (2) |
| O3 | 0.079 (3) | 0.075 (3) | 0.049 (3) | 0.045 (2) | −0.026 (2) | −0.021 (2) |
| O2 | 0.040 (2) | 0.055 (2) | 0.088 (3) | 0.0112 (18) | 0.034 (2) | 0.009 (2) |
| O4 | 0.0365 (17) | 0.0333 (17) | 0.045 (2) | 0.0110 (14) | −0.0050 (15) | −0.0029 (15) |
| O5 | 0.0281 (16) | 0.0327 (17) | 0.057 (2) | −0.0049 (13) | 0.0061 (16) | −0.0020 (16) |
| O6 | 0.0299 (17) | 0.0338 (17) | 0.066 (2) | 0.0023 (14) | 0.0125 (16) | −0.0058 (17) |
| O7 | 0.0416 (18) | 0.0311 (16) | 0.048 (2) | 0.0056 (14) | 0.0099 (16) | 0.0142 (15) |
| O8 | 0.055 (2) | 0.0375 (18) | 0.041 (2) | 0.0050 (17) | −0.0043 (17) | −0.0050 (16) |
| O9 | 0.054 (2) | 0.061 (3) | 0.071 (3) | −0.007 (2) | −0.004 (2) | −0.023 (2) |
| O10 | 0.084 (3) | 0.046 (2) | 0.074 (3) | 0.004 (2) | 0.026 (2) | −0.023 (2) |
| O11 | 0.0348 (18) | 0.057 (2) | 0.050 (2) | −0.0048 (17) | −0.0036 (17) | −0.0155 (18) |
| O12 | 0.066 (2) | 0.0294 (18) | 0.057 (2) | 0.0063 (17) | 0.018 (2) | −0.0091 (16) |
| N1 | 0.037 (2) | 0.031 (2) | 0.038 (2) | 0.0060 (17) | 0.0050 (18) | −0.0043 (18) |
| N2 | 0.039 (2) | 0.041 (2) | 0.046 (3) | 0.0080 (19) | 0.000 (2) | −0.004 (2) |
| N3 | 0.055 (3) | 0.029 (2) | 0.055 (3) | −0.006 (2) | 0.019 (2) | −0.0050 (19) |
| N4 | 0.039 (2) | 0.0234 (17) | 0.032 (2) | 0.0039 (16) | −0.0007 (17) | −0.0015 (15) |
| N5 | 0.046 (2) | 0.036 (2) | 0.033 (2) | 0.0113 (18) | −0.0072 (19) | −0.0061 (17) |
| N6 | 0.043 (2) | 0.0291 (19) | 0.034 (2) | −0.0076 (17) | 0.0117 (19) | −0.0040 (16) |
| C1 | 0.033 (2) | 0.032 (2) | 0.037 (3) | 0.0022 (19) | 0.010 (2) | 0.003 (2) |
| C2 | 0.034 (2) | 0.031 (2) | 0.038 (3) | −0.0001 (19) | 0.012 (2) | 0.000 (2) |
| C3 | 0.042 (3) | 0.027 (2) | 0.055 (3) | 0.008 (2) | 0.020 (2) | 0.007 (2) |
| C4 | 0.037 (3) | 0.047 (3) | 0.042 (3) | 0.009 (2) | 0.005 (2) | 0.014 (2) |
| C5 | 0.035 (2) | 0.041 (3) | 0.035 (3) | 0.002 (2) | 0.003 (2) | −0.001 (2) |
| C6 | 0.032 (2) | 0.029 (2) | 0.023 (2) | −0.0036 (18) | 0.0041 (19) | 0.0005 (18) |
| C7 | 0.035 (2) | 0.023 (2) | 0.029 (2) | −0.0039 (17) | 0.0094 (19) | −0.0007 (18) |
| C8 | 0.043 (3) | 0.027 (2) | 0.047 (3) | 0.006 (2) | 0.012 (2) | 0.005 (2) |
| C9 | 0.041 (3) | 0.045 (3) | 0.038 (3) | 0.013 (2) | −0.005 (2) | 0.005 (2) |
| C10 | 0.044 (3) | 0.038 (3) | 0.031 (3) | −0.003 (2) | −0.005 (2) | 0.000 (2) |
| Se1—O3 | 1.602 (4) | N4—C10 | 1.347 (5) |
| Se1—O2 | 1.604 (3) | N4—C6 | 1.359 (5) |
| Se1—O4 | 1.620 (3) | N4—H4 | 0.8600 |
| Se1—O1 | 1.689 (4) | N5—C6 | 1.316 (5) |
| Se2—O8 | 1.603 (3) | N5—H5A | 0.8600 |
| Se2—O6 | 1.616 (3) | N5—H5B | 0.8600 |
| Se2—O7 | 1.621 (3) | N6—C7 | 1.456 (5) |
| Se2—O5 | 1.713 (3) | C1—C2 | 1.412 (6) |
| O1—H1 | 0.8200 | C2—C3 | 1.369 (7) |
| O5—H5 | 0.8200 | C3—C4 | 1.377 (7) |
| O9—N3 | 1.225 (5) | C3—H3 | 0.9300 |
| O10—N3 | 1.216 (5) | C4—C5 | 1.355 (7) |
| O11—N6 | 1.224 (5) | C4—H4A | 0.9300 |
| O12—N6 | 1.217 (5) | C5—H5C | 0.9300 |
| N1—C1 | 1.352 (6) | C6—C7 | 1.417 (6) |
| N1—C5 | 1.357 (6) | C7—C8 | 1.370 (6) |
| N1—H1A | 0.8600 | C8—C9 | 1.374 (7) |
| N2—C1 | 1.321 (6) | C8—H8 | 0.9300 |
| N2—H2A | 0.8600 | C9—C10 | 1.351 (7) |
| N2—H2B | 0.8600 | C9—H9 | 0.9300 |
| N3—C2 | 1.463 (6) | C10—H10 | 0.9300 |
| O3—Se1—O2 | 112.5 (2) | O11—N6—C7 | 118.4 (4) |
| O3—Se1—O4 | 111.03 (18) | N2—C1—N1 | 117.2 (4) |
| O2—Se1—O4 | 112.89 (19) | N2—C1—C2 | 127.9 (5) |
| O3—Se1—O1 | 106.9 (3) | N1—C1—C2 | 114.9 (4) |
| O2—Se1—O1 | 105.2 (2) | C3—C2—C1 | 121.1 (4) |
| O4—Se1—O1 | 107.86 (17) | C3—C2—N3 | 119.1 (4) |
| O8—Se2—O6 | 114.36 (18) | C1—C2—N3 | 119.8 (4) |
| O8—Se2—O7 | 110.84 (17) | C2—C3—C4 | 121.1 (4) |
| O6—Se2—O7 | 114.76 (17) | C2—C3—H3 | 119.4 |
| O8—Se2—O5 | 108.25 (19) | C4—C3—H3 | 119.4 |
| O6—Se2—O5 | 101.41 (16) | C5—C4—C3 | 117.9 (4) |
| O7—Se2—O5 | 106.24 (17) | C5—C4—H4A | 121.0 |
| Se1—O1—H1 | 109.5 | C3—C4—H4A | 121.0 |
| Se2—O5—H5 | 109.5 | C4—C5—N1 | 120.4 (5) |
| C1—N1—C5 | 124.5 (4) | C4—C5—H5C | 119.8 |
| C1—N1—H1A | 117.7 | N1—C5—H5C | 119.8 |
| C5—N1—H1A | 117.7 | N5—C6—N4 | 117.6 (4) |
| C1—N2—H2A | 120.0 | N5—C6—C7 | 127.6 (4) |
| C1—N2—H2B | 120.0 | N4—C6—C7 | 114.8 (4) |
| H2A—N2—H2B | 120.0 | C8—C7—C6 | 120.8 (4) |
| O10—N3—O9 | 123.6 (5) | C8—C7—N6 | 118.7 (4) |
| O10—N3—C2 | 117.8 (4) | C6—C7—N6 | 120.4 (4) |
| O9—N3—C2 | 118.6 (4) | C7—C8—C9 | 120.8 (4) |
| C10—N4—C6 | 124.6 (4) | C7—C8—H8 | 119.6 |
| C10—N4—H4 | 117.7 | C9—C8—H8 | 119.6 |
| C6—N4—H4 | 117.7 | C10—C9—C8 | 118.7 (4) |
| C6—N5—H5A | 120.0 | C10—C9—H9 | 120.6 |
| C6—N5—H5B | 120.0 | C8—C9—H9 | 120.6 |
| H5A—N5—H5B | 120.0 | N4—C10—C9 | 120.3 (4) |
| O12—N6—O11 | 124.2 (4) | N4—C10—H10 | 119.9 |
| O12—N6—C7 | 117.5 (4) | C9—C10—H10 | 119.9 |
| H··· | ||||
| O1—H1···O6 | 0.82 | 1.75 | 2.565 (5) | 170 |
| O5—H5···O2i | 0.82 | 1.80 | 2.601 (5) | 167 |
| N1—H1A···O4 | 0.86 | 1.84 | 2.679 (5) | 166 |
| N2—H2A···O3 | 0.86 | 2.02 | 2.870 (6) | 172 |
| N2—H2B···O9 | 0.86 | 2.09 | 2.675 (6) | 124 |
| N2—H2B···O8ii | 0.86 | 2.28 | 2.933 (5) | 133 |
| N4—H4···O7 | 0.86 | 2.05 | 2.864 (5) | 157 |
| N5—H5A···O8 | 0.86 | 2.07 | 2.900 (5) | 163 |
| N5—H5B···O3ii | 0.86 | 2.11 | 2.798 (5) | 137 |
| N5—H5B···O11 | 0.86 | 2.12 | 2.693 (5) | 124 |
| C3—H3···O5iii | 0.93 | 2.54 | 3.443 (5) | 163 |
| C4—H4A···O12iv | 0.93 | 2.47 | 3.290 (6) | 148 |
| C8—H8···O6iii | 0.93 | 2.57 | 3.463 (6) | 162 |
| C10—H10···O4v | 0.93 | 2.35 | 3.228 (6) | 158 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O6 | 0.82 | 1.75 | 2.565 (5) | 170 |
| O5—H5⋯O2i | 0.82 | 1.80 | 2.601 (5) | 167 |
| N1—H1 | 0.86 | 1.84 | 2.679 (5) | 166 |
| N2—H2 | 0.86 | 2.02 | 2.870 (6) | 172 |
| N2—H2 | 0.86 | 2.09 | 2.675 (6) | 124 |
| N2—H2 | 0.86 | 2.28 | 2.933 (5) | 133 |
| N4—H4⋯O7 | 0.86 | 2.05 | 2.864 (5) | 157 |
| N5—H5 | 0.86 | 2.07 | 2.900 (5) | 163 |
| N5—H5 | 0.86 | 2.11 | 2.798 (5) | 137 |
| N5—H5 | 0.86 | 2.12 | 2.693 (5) | 124 |
| C3—H3⋯O5iii | 0.93 | 2.54 | 3.443 (5) | 163 |
| C4—H4 | 0.93 | 2.47 | 3.290 (6) | 148 |
| C8—H8⋯O6iii | 0.93 | 2.57 | 3.463 (6) | 162 |
| C10—H10⋯O4v | 0.93 | 2.35 | 3.228 (6) | 158 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .