Literature DB >> 21478852

Overcoming barriers to membrane protein structure determination.

Roslyn M Bill1, Peter J F Henderson, So Iwata, Edmund R S Kunji, Hartmut Michel, Richard Neutze, Simon Newstead, Bert Poolman, Christopher G Tate, Horst Vogel.   

Abstract

After decades of slow progress, the pace of research on membrane protein structures is beginning to quicken thanks to various improvements in technology, including protein engineering and microfocus X-ray diffraction. Here we review these developments and, where possible, highlight generic new approaches to solving membrane protein structures based on recent technological advances. Rational approaches to overcoming the bottlenecks in the field are urgently required as membrane proteins, which typically comprise ~30% of the proteomes of organisms, are dramatically under-represented in the structural database of the Protein Data Bank.

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Year:  2011        PMID: 21478852     DOI: 10.1038/nbt.1833

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  88 in total

1.  Development and crystallization of a minimal thermostabilised G protein-coupled receptor.

Authors:  Tony Warne; Maria J Serrano-Vega; Christopher G Tate; Gebhard F X Schertler
Journal:  Protein Expr Purif       Date:  2009-06       Impact factor: 1.650

2.  Fluorescence Detection of Heavy Atom Labeling (FD-HAL): a rapid method for identifying covalently modified cysteine residues by phasing atoms.

Authors:  Vincent Chaptal; Rachna Ujwal; Yiling Nie; Akira Watanabe; Seunghyug Kwon; Jeff Abramson
Journal:  J Struct Biol       Date:  2010-02-10       Impact factor: 2.867

Review 3.  Overexpression of integral membrane proteins for structural studies.

Authors:  R Grisshammer; C G Tate
Journal:  Q Rev Biophys       Date:  1995-08       Impact factor: 5.318

4.  Structure at 2.8 A resolution of cytochrome c oxidase from Paracoccus denitrificans.

Authors:  S Iwata; C Ostermeier; B Ludwig; H Michel
Journal:  Nature       Date:  1995-08-24       Impact factor: 49.962

5.  Crystallizing membrane proteins using lipidic mesophases.

Authors:  Martin Caffrey; Vadim Cherezov
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

6.  Molecular basis of transport and regulation in the Na(+)/betaine symporter BetP.

Authors:  Susanne Ressl; Anke C Terwisscha van Scheltinga; Clemens Vonrhein; Vera Ott; Christine Ziegler
Journal:  Nature       Date:  2009-03-05       Impact factor: 49.962

7.  Thermostabilization of the neurotensin receptor NTS1.

Authors:  Yoko Shibata; Jim F White; Maria J Serrano-Vega; Francesca Magnani; Amanda L Aloia; Reinhard Grisshammer; Christopher G Tate
Journal:  J Mol Biol       Date:  2009-05-05       Impact factor: 5.469

8.  Structure of a prokaryotic virtual proton pump at 3.2 A resolution.

Authors:  Yiling Fang; Hariharan Jayaram; Tania Shane; Ludmila Kolmakova-Partensky; Fang Wu; Carole Williams; Yong Xiong; Christopher Miller
Journal:  Nature       Date:  2009-07-05       Impact factor: 49.962

9.  Protein conformational changes in the bacteriorhodopsin photocycle: comparison of findings from electron and X-ray crystallographic analyses.

Authors:  Teruhisa Hirai; Sriram Subramaniam
Journal:  PLoS One       Date:  2009-06-02       Impact factor: 3.240

10.  Large-scale functional expression of WT and truncated human adenosine A2A receptor in Pichia pastoris bioreactor cultures.

Authors:  Shweta Singh; Adrien Gras; Cédric Fiez-Vandal; Jonathan Ruprecht; Rohini Rana; Magdalena Martinez; Philip G Strange; Renaud Wagner; Bernadette Byrne
Journal:  Microb Cell Fact       Date:  2008-10-10       Impact factor: 5.328

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  124 in total

1.  In situ 19F NMR studies of an E. coli membrane protein.

Authors:  Pan Shi; Dong Li; Hongwei Chen; Ying Xiong; Yusong Wang; Changlin Tian
Journal:  Protein Sci       Date:  2012-02-23       Impact factor: 6.725

Review 2.  Helical membrane protein conformations and their environment.

Authors:  Timothy A Cross; Dylan T Murray; Anthony Watts
Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

3.  Structural adaptations of proteins to different biological membranes.

Authors:  Irina D Pogozheva; Stephanie Tristram-Nagle; Henry I Mosberg; Andrei L Lomize
Journal:  Biochim Biophys Acta       Date:  2013-06-27

4.  Phasing statistics for alpha helical membrane protein structures.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

Review 5.  Membrane protein structural biology in the era of single particle cryo-EM.

Authors:  Yifan Cheng
Journal:  Curr Opin Struct Biol       Date:  2018-09-13       Impact factor: 6.809

6.  Expression and Purification of Human Mitochondrial Intramembrane Protease PARL.

Authors:  Elena Arutyunova; Laine Lysyk; Melissa Morrison; Cory Brooks; M Joanne Lemieux
Journal:  Methods Mol Biol       Date:  2021

7.  Advances in GPCR modeling evaluated by the GPCR Dock 2013 assessment: meeting new challenges.

Authors:  Irina Kufareva; Vsevolod Katritch; Raymond C Stevens; Ruben Abagyan
Journal:  Structure       Date:  2014-07-24       Impact factor: 5.006

Review 8.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

9.  The ghrelin O-acyltransferase structure reveals a catalytic channel for transmembrane hormone acylation.

Authors:  Maria B Campaña; Flaviyan Jerome Irudayanathan; Tasha R Davis; Kayleigh R McGovern-Gooch; Rosemary Loftus; Mohammad Ashkar; Najae Escoffery; Melissa Navarro; Michelle A Sieburg; Shikha Nangia; James L Hougland
Journal:  J Biol Chem       Date:  2019-08-14       Impact factor: 5.157

10.  Membrane protein native state discrimination by implicit membrane models.

Authors:  Olga Yuzlenko; Themis Lazaridis
Journal:  J Comput Chem       Date:  2012-12-07       Impact factor: 3.376

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