Literature DB >> 19390528

Crystallizing membrane proteins using lipidic mesophases.

Martin Caffrey1, Vadim Cherezov.   

Abstract

A detailed protocol for crystallizing membrane proteins that makes use of lipidic mesophases is described. This has variously been referred to as the lipid cubic phase or in meso method. The method has been shown to be quite general in that it has been used to solve X-ray crystallographic structures of prokaryotic and eukaryotic proteins, proteins that are monomeric, homo- and hetero-multimeric, chromophore-containing and chromophore-free, and alpha-helical and beta-barrel proteins. Its most recent successes are the human-engineered beta(2)-adrenergic and adenosine A(2A) G protein-coupled receptors. Protocols are provided for preparing and characterizing the lipidic mesophase, for reconstituting the protein into the monoolein-based mesophase, for functional assay of the protein in the mesophase and for setting up crystallizations in manual mode. Methods for harvesting microcrystals are also described. The time required to prepare the protein-loaded mesophase and to set up a crystallization plate manually is about 1 h.

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Year:  2009        PMID: 19390528      PMCID: PMC2732203          DOI: 10.1038/nprot.2009.31

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  46 in total

1.  Enzymic release of crystals from lipidic cubic phases.

Authors:  P Nollert; E M Landau
Journal:  Biochem Soc Trans       Date:  1998-11       Impact factor: 5.407

2.  In meso structure of the cobalamin transporter, BtuB, at 1.95 A resolution.

Authors:  V Cherezov; E Yamashita; W Liu; M Zhalnina; W A Cramer; M Caffrey
Journal:  J Mol Biol       Date:  2006-09-12       Impact factor: 5.469

3.  Gramicidin structure and disposition in highly curved membranes.

Authors:  W Liu; M Caffrey
Journal:  J Struct Biol       Date:  2005-04       Impact factor: 2.867

4.  Membrane protein crystallization in lipidic mesophases. A mechanism study using X-ray microdiffraction.

Authors:  Vadim Cherezov; Martin Caffrey
Journal:  Faraday Discuss       Date:  2007       Impact factor: 4.008

5.  Room to move: crystallizing membrane proteins in swollen lipidic mesophases.

Authors:  Vadim Cherezov; Jeffrey Clogston; Miroslav Z Papiz; Martin Caffrey
Journal:  J Mol Biol       Date:  2006-02-02       Impact factor: 5.469

6.  Crystallization of soluble proteins in vapor diffusion for x-ray crystallography.

Authors:  Manuela Benvenuti; Stefano Mangani
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

7.  Structure of bacteriorhodopsin at 1.55 A resolution.

Authors:  H Luecke; B Schobert; H T Richter; J P Cartailler; J K Lanyi
Journal:  J Mol Biol       Date:  1999-08-27       Impact factor: 5.469

8.  Disarming flu viruses.

Authors:  W G Laver; N Bischofberger; R G Webster
Journal:  Sci Am       Date:  1999-01       Impact factor: 2.142

9.  Membrane protein crystallization in lipidic mesophases with tailored bilayers.

Authors:  Lisa V Misquitta; Yohann Misquitta; Vadim Cherezov; Orla Slattery; Jakkam M Mohan; David Hart; Mariya Zhalnina; William A Cramer; Martin Caffrey
Journal:  Structure       Date:  2004-12       Impact factor: 5.006

Review 10.  The Membrane Protein Data Bank.

Authors:  P Raman; V Cherezov; M Caffrey
Journal:  Cell Mol Life Sci       Date:  2006-01       Impact factor: 9.261

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  324 in total

1.  The cubicon method for concentrating membrane proteins in the cubic mesophase.

Authors:  Pikyee Ma; Dietmar Weichert; Luba A Aleksandrov; Timothy J Jensen; John R Riordan; Xiangyu Liu; Brian K Kobilka; Martin Caffrey
Journal:  Nat Protoc       Date:  2017-08-03       Impact factor: 13.491

Review 2.  Ice breaking in GPCR structural biology.

Authors:  Qiang Zhao; Bei-li Wu
Journal:  Acta Pharmacol Sin       Date:  2012-01-30       Impact factor: 6.150

3.  Crystallizing transmembrane peptides in lipidic mesophases.

Authors:  Nicole Höfer; David Aragão; Martin Caffrey
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

4.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

5.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

6.  5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology.

Authors:  Yao Peng; John D McCorvy; Kasper Harpsøe; Katherine Lansu; Shuguang Yuan; Petr Popov; Lu Qu; Mengchen Pu; Tao Che; Louise F Nikolajsen; Xi-Ping Huang; Yiran Wu; Ling Shen; Walden E Bjørn-Yoshimoto; Kang Ding; Daniel Wacker; Gye Won Han; Jianjun Cheng; Vsevolod Katritch; Anders A Jensen; Michael A Hanson; Suwen Zhao; David E Gloriam; Bryan L Roth; Raymond C Stevens; Zhi-Jie Liu
Journal:  Cell       Date:  2018-02-01       Impact factor: 41.582

7.  Structural Connection between Activation Microswitch and Allosteric Sodium Site in GPCR Signaling.

Authors:  Kate L White; Matthew T Eddy; Zhan-Guo Gao; Gye Won Han; Tiffany Lian; Alexander Deary; Nilkanth Patel; Kenneth A Jacobson; Vsevolod Katritch; Raymond C Stevens
Journal:  Structure       Date:  2018-01-27       Impact factor: 5.006

8.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

Review 9.  Structural biology of G protein-coupled receptors: new opportunities from XFELs and cryoEM.

Authors:  Andrii Ishchenko; Cornelius Gati; Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2018-03-16       Impact factor: 6.809

10.  Structure and ligand-binding mechanism of the human OX1 and OX2 orexin receptors.

Authors:  Jie Yin; Kerim Babaoglu; Chad A Brautigam; Lindsay Clark; Zhenhua Shao; Thomas H Scheuermann; Charles M Harrell; Anthony L Gotter; Anthony J Roecker; Christopher J Winrow; John J Renger; Paul J Coleman; Daniel M Rosenbaum
Journal:  Nat Struct Mol Biol       Date:  2016-03-07       Impact factor: 15.369

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