Literature DB >> 23996195

Helical membrane protein conformations and their environment.

Timothy A Cross1, Dylan T Murray, Anthony Watts.   

Abstract

Evidence that membrane proteins respond conformationally and functionally to their environment is growing. Structural models, by necessity, have been characterized in preparations where the protein has been removed from its native environment. Different structural methods have used various membrane mimetics that have recently included lipid bilayers as a more native-like environment. Structural tools applied to lipid bilayer-embedded integral proteins are informing us about important generic characteristics of how membrane proteins respond to the lipid environment as compared with their response to other nonlipid environments. Here, we review the current status of the field, with specific reference to observations of some well-studied α-helical membrane proteins, as a starting point to aid the development of possible generic principles for model refinement.

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Year:  2013        PMID: 23996195      PMCID: PMC3818118          DOI: 10.1007/s00249-013-0925-x

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  182 in total

Review 1.  How soft is a protein? A protein dynamics force constant measured by neutron scattering.

Authors:  G Zaccai
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

Review 2.  How proteins adapt to a membrane-water interface.

Authors:  J A Killian; G von Heijne
Journal:  Trends Biochem Sci       Date:  2000-09       Impact factor: 13.807

3.  Characterization of membrane proteins in isolated native cellular membranes by dynamic nuclear polarization solid-state NMR spectroscopy without purification and reconstitution.

Authors:  Tomas Jacso; W Trent Franks; Honor Rose; Uwe Fink; Jana Broecker; Sandro Keller; Hartmut Oschkinat; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-23       Impact factor: 15.336

4.  Sar1p N-terminal helix initiates membrane curvature and completes the fission of a COPII vesicle.

Authors:  Marcus C S Lee; Lelio Orci; Susan Hamamoto; Eugene Futai; Mariella Ravazzola; Randy Schekman
Journal:  Cell       Date:  2005-08-26       Impact factor: 41.582

5.  An inward-facing conformation of a putative metal-chelate-type ABC transporter.

Authors:  H W Pinkett; A T Lee; P Lum; K P Locher; D C Rees
Journal:  Science       Date:  2006-12-07       Impact factor: 47.728

6.  Spin-label studies of lipid-protein interactions in (Na+,K+)-ATPase membranes from rectal glands of Squalus acanthias.

Authors:  M Esmann; A Watts; D Marsh
Journal:  Biochemistry       Date:  1985-03-12       Impact factor: 3.162

7.  Magic angle spinning NMR investigation of influenza A M2(18-60): support for an allosteric mechanism of inhibition.

Authors:  Loren B Andreas; Matthew T Eddy; Rafal M Pielak; James Chou; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2010-08-18       Impact factor: 15.419

8.  Structural and orientational constraints of bacteriorhodopsin in purple membranes determined by oriented-sample solid-state NMR spectroscopy.

Authors:  Miya Kamihira; Thomas Vosegaard; A James Mason; Suzana K Straus; Niels Chr Nielsen; Anthony Watts
Journal:  J Struct Biol       Date:  2005-01       Impact factor: 2.867

9.  Alternating access in maltose transporter mediated by rigid-body rotations.

Authors:  Dheeraj Khare; Michael L Oldham; Cedric Orelle; Amy L Davidson; Jue Chen
Journal:  Mol Cell       Date:  2009-02-27       Impact factor: 17.970

10.  Probing the interaction of lipids with the non-annular binding sites of the potassium channel KcsA by magic-angle spinning NMR.

Authors:  Phedra Marius; Maurits R R de Planque; Philip T F Williamson
Journal:  Biochim Biophys Acta       Date:  2011-09-22
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  34 in total

1.  Development of electron spin echo envelope modulation spectroscopy to probe the secondary structure of recombinant membrane proteins in a lipid bilayer.

Authors:  Rongfu Zhang; Indra D Sahu; Kaylee R Gibson; Nefertiti B Muhammad; Avnika P Bali; Raven G Comer; Lishan Liu; Andrew F Craig; Robert M Mccarrick; Carole Dabney-Smith; Charles R Sanders; Gary A Lorigan
Journal:  Protein Sci       Date:  2015-09-09       Impact factor: 6.725

2.  Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers.

Authors:  Nabanita Das; Jian Dai; Ivan Hung; Malini R Rajagopalan; Malini R Rajagopalan; Huan-Xiang Zhou; Timothy A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-29       Impact factor: 11.205

3.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

4.  Preserved Transmembrane Segment Topology, Structure, and Dynamics in Disparate Micellar Environments.

Authors:  David N Langelaan; Aditya Pandey; Muzaddid Sarker; Jan K Rainey
Journal:  J Phys Chem Lett       Date:  2017-05-12       Impact factor: 6.475

Review 5.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

6.  The development of solid-state NMR of membrane proteins.

Authors:  Stanley J Opella
Journal:  Biomed Spectrosc Imaging       Date:  2014

7.  Assignment of oriented sample NMR resonances from a three transmembrane helix protein.

Authors:  D T Murray; I Hung; T A Cross
Journal:  J Magn Reson       Date:  2014-01-21       Impact factor: 2.229

8.  Membrane protein structural validation by oriented sample solid-state NMR: diacylglycerol kinase.

Authors:  Dylan T Murray; Conggang Li; F Philip Gao; Huajun Qin; Timothy A Cross
Journal:  Biophys J       Date:  2014-04-15       Impact factor: 4.033

9.  Solid state NMR: The essential technology for helical membrane protein structural characterization.

Authors:  Timothy A Cross; Vindana Ekanayake; Joana Paulino; Anna Wright
Journal:  J Magn Reson       Date:  2013-12-19       Impact factor: 2.229

10.  Ca(2+) ATPase Conformational Transitions in Lipid Bilayers Mapped by Site-directed Ethylation and Solid-State NMR.

Authors:  Vitaly V Vostrikov; Martin Gustavsson; Tata Gopinath; Dan Mullen; Alysha A Dicke; Vincent Truong; Gianluigi Veglia
Journal:  ACS Chem Biol       Date:  2015-12-18       Impact factor: 5.100

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