Literature DB >> 16306982

Reconstruction of genetic circuits.

David Sprinzak1, Michael B Elowitz.   

Abstract

The complex genetic circuits found in cells are ordinarily studied by analysis of genetic and biochemical perturbations. The inherent modularity of biological components like genes and proteins enables a complementary approach: one can construct and analyse synthetic genetic circuits based on their natural counterparts. Such synthetic circuits can be used as simple in vivo models to explore the relation between the structure and function of a genetic circuit. Here we describe recent progress in this area of synthetic biology, highlighting newly developed genetic components and biological lessons learned from this approach.

Mesh:

Year:  2005        PMID: 16306982     DOI: 10.1038/nature04335

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  104 in total

1.  Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair.

Authors:  Gregory T Kapp; Sen Liu; Amelie Stein; Derek T Wong; Attila Reményi; Brian J Yeh; James S Fraser; Jack Taunton; Wendell A Lim; Tanja Kortemme
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-07       Impact factor: 11.205

2.  Build life to understand it.

Authors:  Michael Elowitz; Wendell A Lim
Journal:  Nature       Date:  2010-12-16       Impact factor: 49.962

Review 3.  Fast, cheap and somewhat in control.

Authors:  Adam P Arkin; Daniel A Fletcher
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

4.  A fluctuation method to quantify in vivo fluorescence data.

Authors:  Nitzan Rosenfeld; Theodore J Perkins; Uri Alon; Michael B Elowitz; Peter S Swain
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

Review 5.  Biology by design: reduction and synthesis of cellular components and behaviour.

Authors:  Philippe Marguet; Frederick Balagadde; Cheemeng Tan; Lingchong You
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

6.  Synthetic ecology: a model system for cooperation.

Authors:  Maitreya J Dunham
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-31       Impact factor: 11.205

7.  Modular chemical mechanism predicts spatiotemporal dynamics of initiation in the complex network of hemostasis.

Authors:  Christian J Kastrup; Matthew K Runyon; Feng Shen; Rustem F Ismagilov
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-16       Impact factor: 11.205

8.  Transcription factor profiling in individual hematopoietic progenitors by digital RT-PCR.

Authors:  Luigi Warren; David Bryder; Irving L Weissman; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-10       Impact factor: 11.205

9.  Engineering stochasticity in gene expression.

Authors:  Jeffrey J Tabor; Travis S Bayer; Zachary B Simpson; Matthew Levy; Andrew D Ellington
Journal:  Mol Biosyst       Date:  2008-05-01

Review 10.  The pedestrian watchmaker: genetic clocks from engineered oscillators.

Authors:  Natalie A Cookson; Lev S Tsimring; Jeff Hasty
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

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