Literature DB >> 19720520

Directed evolution: new parts and optimized function.

Michael J Dougherty1, Frances H Arnold.   

Abstract

Constructing novel biological systems that function in a robust and predictable manner requires better methods for discovering new functional molecules and for optimizing their assembly in novel biological contexts. By enabling functional diversification and optimization in the absence of detailed mechanistic understanding, directed evolution is a powerful complement to 'rational' engineering approaches. Aided by clever selection schemes, directed evolution has generated new parts for genetic circuits, cell-cell communication systems, and non-natural metabolic pathways in bacteria.

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Year:  2009        PMID: 19720520      PMCID: PMC2775421          DOI: 10.1016/j.copbio.2009.08.005

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  31 in total

1.  Directed evolution of a genetic circuit.

Authors:  Yohei Yokobayashi; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-25       Impact factor: 11.205

Review 2.  Directed evolution of proteins for heterologous expression and stability.

Authors:  Cintia Roodveldt; Amir Aharoni; Dan S Tawfik
Journal:  Curr Opin Struct Biol       Date:  2005-02       Impact factor: 6.809

Review 3.  Biology by design: reduction and synthesis of cellular components and behaviour.

Authors:  Philippe Marguet; Frederick Balagadde; Cheemeng Tan; Lingchong You
Journal:  J R Soc Interface       Date:  2007-08-22       Impact factor: 4.118

Review 4.  Genetic parts to program bacteria.

Authors:  Christopher A Voigt
Journal:  Curr Opin Biotechnol       Date:  2006-09-15       Impact factor: 9.740

Review 5.  Synthetic gene circuits: design with directed evolution.

Authors:  Eric L Haseltine; Frances H Arnold
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

6.  Construction and engineering of positive feedback loops.

Authors:  Daniel J Sayut; Yan Niu; Lianhong Sun
Journal:  ACS Chem Biol       Date:  2006-12-20       Impact factor: 5.100

7.  Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR.

Authors:  Cynthia H Collins; Jared R Leadbetter; Frances H Arnold
Journal:  Nat Biotechnol       Date:  2006-05-21       Impact factor: 54.908

8.  Directed evolution of 2-keto-3-deoxy-6-phosphogalactonate aldolase to replace 3-deoxy-D-arabino-heptulosonic acid 7-phosphate synthase.

Authors:  Ningqing Ran; John W Frost
Journal:  J Am Chem Soc       Date:  2007-04-24       Impact factor: 15.419

9.  Bioassay-guided evolution of glycosylated macrolide antibiotics in Escherichia coli.

Authors:  Ho Young Lee; Chaitan Khosla
Journal:  PLoS Biol       Date:  2007-02       Impact factor: 8.029

10.  Diversity-based, model-guided construction of synthetic gene networks with predicted functions.

Authors:  Tom Ellis; Xiao Wang; James J Collins
Journal:  Nat Biotechnol       Date:  2009-04-19       Impact factor: 54.908

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  36 in total

1.  Expression and function of a modified AP2/ERF transcription factor from Brassica napus enhances cold tolerance in transgenic Arabidopsis.

Authors:  Ai-Sheng Xiong; Hai-Hua Jiang; Jing Zhuang; Ri-He Peng; Xiao-Fen Jin; Bo Zhu; Feng Wang; Jian Zhang; Quan-Hong Yao
Journal:  Mol Biotechnol       Date:  2013-02       Impact factor: 2.695

Review 2.  Converting a protein into a switch for biosensing and functional regulation.

Authors:  Margaret M Stratton; Stewart N Loh
Journal:  Protein Sci       Date:  2011-01       Impact factor: 6.725

Review 3.  Technologies of directed protein evolution in vivo.

Authors:  Artem Blagodatski; Vladimir L Katanaev
Journal:  Cell Mol Life Sci       Date:  2010-12-29       Impact factor: 9.261

4.  In vitro evolution goes deep.

Authors:  Alan M Moses; Alan R Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-06       Impact factor: 11.205

5.  The conception of life in synthetic biology.

Authors:  Anna Deplazes-Zemp
Journal:  Sci Eng Ethics       Date:  2011-04-12       Impact factor: 3.525

6.  Tools and systems for evolutionary engineering of biomolecules and microorganisms.

Authors:  Sungho Jang; Minsun Kim; Jaeseong Hwang; Gyoo Yeol Jung
Journal:  J Ind Microbiol Biotechnol       Date:  2019-05-27       Impact factor: 3.346

7.  Directed evolution of bacteriorhodopsin for applications in bioelectronics.

Authors:  Nicole L Wagner; Jordan A Greco; Matthew J Ranaghan; Robert R Birge
Journal:  J R Soc Interface       Date:  2013-05-15       Impact factor: 4.118

8.  Directed Evolution's Influence on Rapid Density Fluctuations Illustrates How Protein Dynamics Can Become Coupled to Chemistry.

Authors:  Joseph W Schafer; Steven D Schwartz
Journal:  ACS Catal       Date:  2020-07-07       Impact factor: 13.084

Review 9.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

10.  Directed evolution of protein-based neurotransmitter sensors for MRI.

Authors:  Philip A Romero; Mikhail G Shapiro; Frances H Arnold; Alan Jasanoff
Journal:  Methods Mol Biol       Date:  2013
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