Literature DB >> 29380152

In vivo biosensors: mechanisms, development, and applications.

Shuobo Shi1,2, Ee Lui Ang3, Huimin Zhao4,5,6.   

Abstract

In vivo biosensors can recognize and respond to specific cellular stimuli. In recent years, biosensors have been increasingly used in metabolic engineering and synthetic biology, because they can be implemented in synthetic circuits to control the expression of reporter genes in response to specific cellular stimuli, such as a certain metabolite or a change in pH. There are many types of natural sensing devices, which can be generally divided into two main categories: protein-based and nucleic acid-based. Both can be obtained either by directly mining from natural genetic components or by engineering the existing genetic components for novel specificity or improved characteristics. A wide range of new technologies have enabled rapid engineering and discovery of new biosensors, which are paving the way for a new era of biotechnological progress. Here, we review recent advances in the design, optimization, and applications of in vivo biosensors in the field of metabolic engineering and synthetic biology.

Keywords:  Biosensor; Metabolic engineering; Metabolite sensing; Synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29380152     DOI: 10.1007/s10295-018-2004-x

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  196 in total

1.  Self-induced metabolic state switching by a tunable cell density sensor for microbial isopropanol production.

Authors:  Yuki Soma; Taizo Hanai
Journal:  Metab Eng       Date:  2015-04-20       Impact factor: 9.783

Review 2.  Engineering metabolism through dynamic control.

Authors:  Naveen Venayak; Nikolaos Anesiadis; William R Cluett; Radhakrishnan Mahadevan
Journal:  Curr Opin Biotechnol       Date:  2015-01-20       Impact factor: 9.740

3.  Modification of response behavior of zinc sensing HydHG two-component system using a self-activation loop and genomic integration.

Authors:  Van Dung Pham; Sambandam Ravikumar; Seung Hwan Lee; Soon Ho Hong; Ik-Keun Yoo
Journal:  Bioprocess Biosyst Eng       Date:  2012-11-03       Impact factor: 3.210

4.  Automated physics-based design of synthetic riboswitches from diverse RNA aptamers.

Authors:  Amin Espah Borujeni; Dennis M Mishler; Jingzhi Wang; Walker Huso; Howard M Salis
Journal:  Nucleic Acids Res       Date:  2015-11-30       Impact factor: 16.971

5.  Functional GFP-metallothionein fusion protein from Tetrahymena thermophila: a potential whole-cell biosensor for monitoring heavy metal pollution and a cell model to study metallothionein overproduction effects.

Authors:  Francisco Amaro; Aaron P Turkewitz; Ana Martín-González; Juan Carlos Gutiérrez
Journal:  Biometals       Date:  2014-01-16       Impact factor: 2.949

6.  RNA-based fluorescent biosensors for live cell imaging of second messengers cyclic di-GMP and cyclic AMP-GMP.

Authors:  Colleen A Kellenberger; Stephen C Wilson; Jade Sales-Lee; Ming C Hammond
Journal:  J Am Chem Soc       Date:  2013-03-21       Impact factor: 15.419

7.  Bacterial XylRs and synthetic promoters function as genetically encoded xylose biosensors in Saccharomyces cerevisiae.

Authors:  Wei Suong Teo; Matthew Wook Chang
Journal:  Biotechnol J       Date:  2014-08-07       Impact factor: 4.677

8.  Engineering an allosteric transcription factor to respond to new ligands.

Authors:  Noah D Taylor; Alexander S Garruss; Rocco Moretti; Sum Chan; Mark A Arbing; Duilio Cascio; Jameson K Rogers; Farren J Isaacs; Sriram Kosuri; David Baker; Stanley Fields; George M Church; Srivatsan Raman
Journal:  Nat Methods       Date:  2015-12-21       Impact factor: 28.547

9.  Engineering of synthetic, stress-responsive yeast promoters.

Authors:  Arun S Rajkumar; Guodong Liu; David Bergenholm; Dushica Arsovska; Mette Kristensen; Jens Nielsen; Michael K Jensen; Jay D Keasling
Journal:  Nucleic Acids Res       Date:  2016-06-20       Impact factor: 16.971

10.  Landscape and variation of RNA secondary structure across the human transcriptome.

Authors:  Yue Wan; Kun Qu; Qiangfeng Cliff Zhang; Ryan A Flynn; Ohad Manor; Zhengqing Ouyang; Jiajing Zhang; Robert C Spitale; Michael P Snyder; Eran Segal; Howard Y Chang
Journal:  Nature       Date:  2014-01-30       Impact factor: 49.962

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  9 in total

1.  Development of a Genetically Encoded Biosensor for Detection of Polyketide Synthase Extender Units in Escherichia coli.

Authors:  Edward Kalkreuter; Aaron M Keeler; Alexandra A Malico; Kyle S Bingham; Anuran K Gayen; Gavin J Williams
Journal:  ACS Synth Biol       Date:  2019-05-28       Impact factor: 5.110

2.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

3.  Directed Evolution of Transcription Factor-Based Biosensors for Altered Effector Specificity.

Authors:  Leopoldo Ferreira Marques Machado; Neil Dixon
Journal:  Methods Mol Biol       Date:  2022

4.  In Vivo Screening Method for the Identification and Characterization of Prokaryotic, Metabolite-Responsive Transcription Factors.

Authors:  Amber Joka Bernauw; Veerke De Kock; Indra Bervoets
Journal:  Methods Mol Biol       Date:  2022

5.  Extended Metabolic Biosensor Design for Dynamic Pathway Regulation of Cell Factories.

Authors:  Yadira Boada; Alejandro Vignoni; Jesús Picó; Pablo Carbonell
Journal:  iScience       Date:  2020-06-23

Review 6.  Genetically encoded biosensors for lignocellulose valorization.

Authors:  Guadalupe Alvarez-Gonzalez; Neil Dixon
Journal:  Biotechnol Biofuels       Date:  2019-10-15       Impact factor: 6.040

7.  Development of High-Performance Whole Cell Biosensors Aided by Statistical Modeling.

Authors:  Adokiye Berepiki; Ross Kent; Leopoldo F M Machado; Neil Dixon
Journal:  ACS Synth Biol       Date:  2020-02-17       Impact factor: 5.110

8.  Guanidine Biosensors Enable Comparison of Cellular Turn-on Kinetics of Riboswitch-Based Biosensor and Reporter.

Authors:  Sudeshna Manna; Johnny Truong; Ming C Hammond
Journal:  ACS Synth Biol       Date:  2021-03-01       Impact factor: 5.110

9.  Development and characterization of a glycine biosensor system for fine-tuned metabolic regulation in Escherichia coli.

Authors:  Kun-Qiang Hong; Jing Zhang; Biao Jin; Tao Chen; Zhi-Wen Wang
Journal:  Microb Cell Fact       Date:  2022-04-07       Impact factor: 5.328

  9 in total

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