Literature DB >> 31805217

Deuteron Quadrupolar Chemical Exchange Saturation Transfer (Q-CEST) Solid-State NMR for Static Powder Samples: Approach and Applications to Amyloid-β Fibrils.

Liliya Vugmeyster1, Dmitry Ostrovsky2, Riqiang Fu3.   

Abstract

We provide an experimental and computational framework for 2 H quadrupolar chemical exchange saturation transfer NMR experiments (Q-CEST) under static solid-state conditions for the quantification of dynamics on μs-ms timescales. Simulations using simple 2-site exchange models provide insights into the relation between spin dynamics and motions. Biological applications focus on two sites of amyloid-β fibrils in the 3-fold symmetric polymorph. The first site, the methyl group of A2 of the disordered N-terminal domain, undergoes diffusive motions and conformational exchange due to transient interactions. Earlier 2 H rotating frame relaxation and quadrupolar CPMG measurements are combined with the Q-CEST approach to characterize the multiple conformational states of the domain. The second site, the methyl group of M35, spans the water-accessible cavity inside the fibrils' core and undergoes extensive rotameric exchange. Q-CEST permits us to refine the rotameric exchange model for this site and allows the more precise determination of populations and rotameric exchange rate constants than line shape analysis.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2020        PMID: 31805217      PMCID: PMC7002291          DOI: 10.1002/cphc.201901053

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  31 in total

1.  Seeded growth of beta-amyloid fibrils from Alzheimer's brain-derived fibrils produces a distinct fibril structure.

Authors:  Anant K Paravastu; Isam Qahwash; Richard D Leapman; Stephen C Meredith; Robert Tycko
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-17       Impact factor: 11.205

Review 2.  Chemical exchange in biomacromolecules: past, present, and future.

Authors:  Arthur G Palmer
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

3.  ODESSA, a New 1D NMR Exchange Experiment for Chemically Equivalent Nuclei in Rotating Solids

Authors: 
Journal:  J Magn Reson A       Date:  1996-11

4.  Fast Motions of Key Methyl Groups in Amyloid-β Fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Matthew A Clark; Isaac B Falconer; Gina L Hoatson; Wei Qiang
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

5.  Selective inversion investigations of slow molecular motion in solid state deuteron NMR spectroscopy.

Authors:  M J Brown; R L Vold; G L Hoatson
Journal:  Solid State Nucl Magn Reson       Date:  1996-04       Impact factor: 2.293

6.  Slow motions in the hydrophobic core of chicken villin headpiece subdomain and their contributions to configurational entropy and heat capacity from solid-state deuteron NMR measurements.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Anastasia Khadjinova; Jeremy Ellden; Gina L Hoatson; Robert L Vold
Journal:  Biochemistry       Date:  2011-11-18       Impact factor: 3.162

7.  Experimental constraints on quaternary structure in Alzheimer's beta-amyloid fibrils.

Authors:  Aneta T Petkova; Wai-Ming Yau; Robert Tycko
Journal:  Biochemistry       Date:  2006-01-17       Impact factor: 3.162

8.  Deuterium Rotating Frame NMR Relaxation Measurements in the Solid State under Static Conditions for Quantification of Dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Chemphyschem       Date:  2018-08-21       Impact factor: 3.102

9.  Spin-locking of half-integer quadrupolar nuclei in nuclear magnetic resonance of solids: creation and evolution of coherences.

Authors:  Sharon E Ashbrook; Stephen Wimperis
Journal:  J Chem Phys       Date:  2004-02-08       Impact factor: 3.488

10.  Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR.

Authors:  Nicolas L Fawzi; Jinfa Ying; Rodolfo Ghirlando; Dennis A Torchia; G Marius Clore
Journal:  Nature       Date:  2011-10-30       Impact factor: 49.962

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  4 in total

1.  Deuteron rotating frame relaxation for the detection of slow motions in rotating solids.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Alexander Greenwood; Riqiang Fu
Journal:  J Magn Reson       Date:  2022-02-19       Impact factor: 2.229

2.  Comparative Hydrophobic Core Dynamics Between Wild-Type Amyloid-β Fibrils, Glutamate-3 Truncation, and Serine-8 Phosphorylation.

Authors:  Liliya Vugmeyster; Dan Fai Au; Matthew C Smith; Dmitry Ostrovsky
Journal:  Chemphyschem       Date:  2021-12-13       Impact factor: 3.520

Review 3.  Recent developments in deuterium solid-state NMR for the detection of slow motions in proteins.

Authors:  Liliya Vugmeyster
Journal:  Solid State Nucl Magn Reson       Date:  2021-01-07       Impact factor: 2.293

4.  Deuterium solid-state NMR quadrupolar order rotating frame relaxation with applications to amyloid-β fibrils.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Magn Reson Chem       Date:  2020-11-10       Impact factor: 2.392

  4 in total

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