Literature DB >> 31972419

Advances in studying protein disorder with solid-state NMR.

Ansgar B Siemer1.   

Abstract

Solution NMR is a key tool to study intrinsically disordered proteins (IDPs), whose importance for biological function is widely accepted. However, disordered proteins are not limited to solution and are also found in non-soluble systems such as fibrils and membrane proteins. In this Trends article, I will discuss how solid-state NMR can be used to study disorder in non-soluble proteins. Techniques based on dipolar couplings can study static protein disorder which either occurs naturally as e.g. in spider silk or can be induced by freeze trapping IDPs or unfolded proteins. In this case, structural ensembles are directly reflected by a static distribution of dihedral angels that can be determined by the distribution of chemical shifts or other methods. Techniques based on J-couplings can detect dynamic protein disorder under MAS. In this case, only average chemical shifts are measured but disorder can be characterized with a variety of data including secondary chemical shifts, relaxation rates, paramagnetic relaxation enhancements, or residual dipolar couplings. I describe both technical aspects and examples of solid-state NMR on protein disorder and end the article with a discussion of challenges and opportunities of this emerging field.
Copyright © 2020. Published by Elsevier Inc.

Entities:  

Keywords:  Frozen solution; Intrinsically disordered proteins; Protein dynamics; Protein folding; Scalar coupling based methods; Solid-state NMR

Mesh:

Substances:

Year:  2020        PMID: 31972419      PMCID: PMC7202078          DOI: 10.1016/j.ssnmr.2020.101643

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  110 in total

1.  The molecular structure of spider dragline silk: folding and orientation of the protein backbone.

Authors:  J D van Beek; S Hess; F Vollrath; B H Meier
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

2.  Solid-state NMR reveals structural differences between fibrils of wild-type and disease-related A53T mutant alpha-synuclein.

Authors:  Henrike Heise; M Soledad Celej; Stefan Becker; Dietmar Riedel; Avishay Pelah; Ashutosh Kumar; Thomas M Jovin; Marc Baldus
Journal:  J Mol Biol       Date:  2008-05-17       Impact factor: 5.469

3.  Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings.

Authors:  Gabrielle Nodet; Loïc Salmon; Valéry Ozenne; Sebastian Meier; Malene Ringkjøbing Jensen; Martin Blackledge
Journal:  J Am Chem Soc       Date:  2009-12-16       Impact factor: 15.419

Review 4.  Static solid-state 2H NMR methods in studies of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-03-14       Impact factor: 9.795

5.  Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains.

Authors:  Dylan T Murray; Masato Kato; Yi Lin; Kent R Thurber; Ivan Hung; Steven L McKnight; Robert Tycko
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

Review 6.  Stochasticity of Biological Soft Matter: Emerging Concepts in Intrinsically Disordered Proteins and Biological Phase Separation.

Authors:  Konstantin K Turoverov; Irina M Kuznetsova; Alexander V Fonin; April L Darling; Boris Y Zaslavsky; Vladimir N Uversky
Journal:  Trends Biochem Sci       Date:  2019-04-22       Impact factor: 13.807

7.  Structural disorder of monomeric α-synuclein persists in mammalian cells.

Authors:  Francois-Xavier Theillet; Andres Binolfi; Beata Bekei; Andrea Martorana; Honor May Rose; Marchel Stuiver; Silvia Verzini; Dorothea Lorenz; Marleen van Rossum; Daniella Goldfarb; Philipp Selenko
Journal:  Nature       Date:  2016-01-25       Impact factor: 49.962

8.  Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR.

Authors:  Nicolas L Fawzi; Jinfa Ying; Rodolfo Ghirlando; Dennis A Torchia; G Marius Clore
Journal:  Nature       Date:  2011-10-30       Impact factor: 49.962

9.  Integrated solid-state NMR and molecular dynamics modeling determines membrane insertion of human β-defensin analog.

Authors:  Xue Kang; Christopher Elson; Jackson Penfield; Alex Kirui; Adrian Chen; Liqun Zhang; Tuo Wang
Journal:  Commun Biol       Date:  2019-11-01

10.  Unlike twins: an NMR comparison of two α-synuclein polymorphs featuring different toxicity.

Authors:  Julia Gath; Luc Bousset; Birgit Habenstein; Ronald Melki; Anja Böckmann; Beat H Meier
Journal:  PLoS One       Date:  2014-03-05       Impact factor: 3.240

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  6 in total

1.  Transient RNA Interactions Leave a Covalent Imprint on a Viral Capsid Protein.

Authors:  Zahra Harati Taji; Pavlo Bielytskyi; Mikhail Shein; Marc-Antoine Sani; Stefan Seitz; Anne K Schütz
Journal:  J Am Chem Soc       Date:  2022-05-05       Impact factor: 16.383

Review 2.  Tailoring NMR experiments for structural characterization of amorphous biological solids: A practical guide.

Authors:  John E Kelly; Christine Chrissian; Ruth E Stark
Journal:  Solid State Nucl Magn Reson       Date:  2020-08-27       Impact factor: 2.293

Review 3.  Crosslinking mass spectrometry: A link between structural biology and systems biology.

Authors:  Xiaoting Tang; Helisa H Wippel; Juan D Chavez; James E Bruce
Journal:  Protein Sci       Date:  2021-03-06       Impact factor: 6.725

4.  Influence of the Dynamically Disordered N-Terminal Tail Domain on the Amyloid Core Structure of Human Y145Stop Prion Protein Fibrils.

Authors:  Zhe Qi; Krystyna Surewicz; Witold K Surewicz; Christopher P Jaroniec
Journal:  Front Mol Biosci       Date:  2022-02-14

5.  Fast Magic-Angle-Spinning NMR Reveals the Evasive Hepatitis B Virus Capsid C-Terminal Domain.

Authors:  Morgane Callon; Alexander A Malär; Lauriane Lecoq; Marie Dujardin; Marie-Laure Fogeron; Shishan Wang; Maarten Schledorn; Thomas Bauer; Michael Nassal; Anja Böckmann; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2022-06-24       Impact factor: 16.823

6.  Droplet and fibril formation of the functional amyloid Orb2.

Authors:  Kidist Ashami; Alexander S Falk; Connor Hurd; Samridhi Garg; Silvia A Cervantes; Anoop Rawat; Ansgar B Siemer
Journal:  J Biol Chem       Date:  2021-05-25       Impact factor: 5.157

  6 in total

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