Literature DB >> 23277543

Long-range protein-water dynamics in hyperactive insect antifreeze proteins.

Konrad Meister1, Simon Ebbinghaus, Yao Xu, John G Duman, Arthur DeVries, Martin Gruebele, David M Leitner, Martina Havenith.   

Abstract

Antifreeze proteins (AFPs) are specific proteins that are able to lower the freezing point of aqueous solutions relative to the melting point. Hyperactive AFPs, identified in insects, have an especially high ability to depress the freezing point by far exceeding the abilities of other AFPs. In previous studies, we postulated that the activity of AFPs can be attributed to two distinct molecular mechanisms: (i) short-range direct interaction of the protein surface with the growing ice face and (ii) long-range interaction by protein-induced water dynamics extending up to 20 Å from the protein surface. In the present paper, we combine terahertz spectroscopy and molecular simulations to prove that long-range protein-water interactions make essential contributions to the high antifreeze activity of insect AFPs from the beetle Dendroides canadensis. We also support our hypothesis by studying the effect of the addition of the osmolyte sodium citrate.

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Year:  2012        PMID: 23277543      PMCID: PMC3562781          DOI: 10.1073/pnas.1214911110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  Antifreeze Proteins: Structures and Mechanisms of Function.

Authors:  Yin Yeh; Robert E. Feeney
Journal:  Chem Rev       Date:  1996-03-28       Impact factor: 60.622

2.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

3.  Antifreeze glycoprotein activity correlates with long-range protein-water dynamics.

Authors:  Simon Ebbinghaus; Konrad Meister; Benjamin Born; Arthur L DeVries; Martin Gruebele; Martina Havenith
Journal:  J Am Chem Soc       Date:  2010-09-08       Impact factor: 15.419

4.  Dissecting the THz spectrum of liquid water from first principles via correlations in time and space.

Authors:  Matthias Heyden; Jian Sun; Stefan Funkner; Gerald Mathias; Harald Forbert; Martina Havenith; Dominik Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

5.  An extended dynamical hydration shell around proteins.

Authors:  Simon Ebbinghaus; Seung Joong Kim; Matthias Heyden; Xin Yu; Udo Heugen; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

6.  Plant thermal hysteresis proteins.

Authors:  M E Urrutia; J G Duman; C A Knight
Journal:  Biochim Biophys Acta       Date:  1992-05-22

7.  Functional importance of short-range binding and long-range solvent interactions in helical antifreeze peptides.

Authors:  Simon Ebbinghaus; Konrad Meister; Maxim B Prigozhin; Arthur L Devries; Martina Havenith; Joachim Dzubiella; Martin Gruebele
Journal:  Biophys J       Date:  2012-07-17       Impact factor: 4.033

8.  Polycarboxylates enhance beetle antifreeze protein activity.

Authors:  Natapol Amornwittawat; Sen Wang; John G Duman; Xin Wen
Journal:  Biochim Biophys Acta       Date:  2008-06-14

9.  Dual function of the hydration layer around an antifreeze protein revealed by atomistic molecular dynamics simulations.

Authors:  David R Nutt; Jeremy C Smith
Journal:  J Am Chem Soc       Date:  2008-09-06       Impact factor: 15.419

10.  Enhancement of insect antifreeze protein activity by solutes of low molecular mass.

Authors:  N Li; C A Andorfer; J G Duman
Journal:  J Exp Biol       Date:  1998-08       Impact factor: 3.312

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  33 in total

1.  Structural Basis for the Inhibition of Gas Hydrates by α-Helical Antifreeze Proteins.

Authors:  Tianjun Sun; Peter L Davies; Virginia K Walker
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

2.  Observation of ice-like water layers at an aqueous protein surface.

Authors:  Konrad Meister; Simona Strazdaite; Arthur L DeVries; Stephan Lotze; Luuk L C Olijve; Ilja K Voets; Huib J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-02       Impact factor: 11.205

3.  Combined molecular dynamics and neural network method for predicting protein antifreeze activity.

Authors:  Daniel J Kozuch; Frank H Stillinger; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-07       Impact factor: 11.205

Review 4.  Locating and Navigating Energy Transport Networks in Proteins.

Authors:  Korey M Reid; David M Leitner
Journal:  Methods Mol Biol       Date:  2021

5.  Antifreeze protein hydration waters: Unstructured unless bound to ice.

Authors:  Sean M Marks; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-06       Impact factor: 11.205

6.  Water is an active matrix of life for cell and molecular biology.

Authors:  Philip Ball
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-07       Impact factor: 11.205

7.  The Hydration Shell of Monomeric and Dimeric Insulin Studied by Terahertz Time-Domain Spectroscopy.

Authors:  Pengfei Wang; Xiangchao Wang; Liyuan Liu; Hongwei Zhao; Wei Qi; Mingxia He
Journal:  Biophys J       Date:  2019-07-03       Impact factor: 4.033

8.  Entropy connects water structure and dynamics in protein hydration layer.

Authors:  Jayangika N Dahanayake; Katie R Mitchell-Koch
Journal:  Phys Chem Chem Phys       Date:  2018-05-30       Impact factor: 3.676

9.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

Review 10.  Fast-folding proteins under stress.

Authors:  Kapil Dave; Martin Gruebele
Journal:  Cell Mol Life Sci       Date:  2015-08-01       Impact factor: 9.261

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