Literature DB >> 20703855

A 4D TROSY-based pulse scheme for correlating 1HNi,15Ni,13Calphai,13C'i-1 chemical shifts in high molecular weight, 15N,13C, 2H labeled proteins.

R Konrat1, D Yang, L E Kay.   

Abstract

A 4D TROSY-based triple resonance experiment, 4D-HNCO(i-1)CA(i), is presented which correlates intra-residue (1)HN, (15)N, (13) C(alpha) chemical shifts with the carbonyl ((13)C') shift of the preceding residue. The experiment is best used in concert with recently described 4D TROSY-HNCOCA and -HNCACO experiments [Yang, D. and Kay, L.E. (1999) J. Am. Chem. Soc., 121, 2571-2575]. In cases where degeneracy of ((1)HN,(15)N) spin pairs precludes assignment using the HNCOCA and HNCACO, the HNCO(i-1)CA(i) often allows resolution of the ambiguity by linking the (13)C(alpha) and (13)C' spins surrounding the ((1)HN,(15)N) pair. The experiment is demonstrated on a sample of (15)N, (13)C, (2) H labeled maltose binding protein in complex with beta-cyclodextrin that tumbles with a correlation time of 46 ns.

Entities:  

Year:  1999        PMID: 20703855     DOI: 10.1023/A:1008310617047

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  7 in total

1.  Through-bond correlation of imino and aromatic resonances in 13C-, 15N-labeled RNA via heteronuclear TOCSY.

Authors:  V Sklenár; T Dieckmann; S E Butcher; J Feigon
Journal:  J Biomol NMR       Date:  1996-01       Impact factor: 2.835

2.  NMR View: A computer program for the visualization and analysis of NMR data.

Authors:  B A Johnson; R A Blevins
Journal:  J Biomol NMR       Date:  1994-09       Impact factor: 2.835

3.  Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNA.

Authors:  A Pardi
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

6.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

Review 7.  The use of 2H, 13C, 15N multidimensional NMR to study the structure and dynamics of proteins.

Authors:  K H Gardner; L E Kay
Journal:  Annu Rev Biophys Biomol Struct       Date:  1998
  7 in total
  10 in total

1.  A new approach for obtaining sequential assignment of large proteins.

Authors:  P Permi; A Annila
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

2.  A new strategy for backbone resonance assignment in large proteins using a MQ-HACACO experiment.

Authors:  Konstantin Pervushin; Alexander Eletsky
Journal:  J Biomol NMR       Date:  2003-02       Impact factor: 2.835

3.  Backbone resonance assignment in large protonated proteins using a combination of new 3D TROSY-HN(CA)HA, 4D TROSY-HACANH and 13C-detected HACACO experiments.

Authors:  Kaifeng Hu; Alexander Eletsky; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-05       Impact factor: 2.835

4.  4D experiments measured with APSY for automated backbone resonance assignments of large proteins.

Authors:  Barbara Krähenbühl; Julien Boudet; Gerhard Wider
Journal:  J Biomol NMR       Date:  2013-04-30       Impact factor: 2.835

5.  Assignment of 1H(N), 15N, 13C(alpha), 13CO and 13C(beta) resonances in a 67 kDa p53 dimer using 4D-TROSY NMR spectroscopy.

Authors:  F A Mulder; A Ayed; D Yang; C H Arrowsmith; L E Kay
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

6.  Deletion of Phenylalanine 508 in the First Nucleotide-binding Domain of the Cystic Fibrosis Transmembrane Conductance Regulator Increases Conformational Exchange and Inhibits Dimerization.

Authors:  P Andrew Chong; Patrick J Farber; Robert M Vernon; Rhea P Hudson; Anthony K Mittermaier; Julie D Forman-Kay
Journal:  J Biol Chem       Date:  2015-07-06       Impact factor: 5.157

7.  Novel projected 4D triple resonance experiments for polypeptide backbone chemical shift assignment.

Authors:  Youlin Xia; Cheryl H Arrowsmith; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2002-09       Impact factor: 2.835

8.  A strategy to obtain backbone resonance assignments of deuterated proteins in the presence of incomplete amide 2H/1H back-exchange.

Authors:  Frank Löhr; Vicky Katsemi; Judith Hartleib; Ulrich Günther; Heinz Rüterjans
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

Review 9.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

10.  HACANCOi: a new Hα-detected experiment for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Mikael Karjalainen; Helena Tossavainen; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2020-10-28       Impact factor: 2.835

  10 in total

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