Literature DB >> 11495244

A new approach for obtaining sequential assignment of large proteins.

P Permi1, A Annila.   

Abstract

A novel NMR experiment for obtaining sequential assignment of large proteins and protein complexes is described. The proposed method takes full advantage of transverse relaxation optimized spectroscopy (TROSY) and utilizes spin-state-selection to distinguish between intraresidual and sequential connectivities in the HNCA-TROSY-type correlation experiment. Thus, the intra- and interresidual cross peaks can be identified without relaying magnetization via carbonyl carbon, which relaxes very rapidly at the high magnetic fields where TROSY is most efficient. In addition, the presented method enables measurement of several scalar and residual dipolar couplings, which can potentially be used for structure determination of large proteins.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11495244     DOI: 10.1023/a:1011208803036

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  18 in total

1.  Transverse-relaxation-optimized (TROSY) gradient-enhanced triple-resonance NMR spectroscopy.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Magn Reson       Date:  1999-11       Impact factor: 2.229

2.  Transverse relaxation optimised spin-state selective NMR experiments for measurement of residual dipolar couplings.

Authors:  P Permi; A Annila
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

3.  A 4D TROSY-based pulse scheme for correlating 1HNi,15Ni,13Calphai,13C'i-1 chemical shifts in high molecular weight, 15N,13C, 2H labeled proteins.

Authors:  R Konrat; D Yang; L E Kay
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

4.  Spin-state selection filters for the measurement of heteronuclear one-bond coupling constants.

Authors:  P Andersson; J Weigelt; G Otting
Journal:  J Biomol NMR       Date:  1998-10       Impact factor: 2.835

5.  Integration of spin-state-selective excitation into 2D NMR correlation experiments with the heteronuclear ZQ/2Q pi rotations for 1JXH- resolved E.COSY-type measurements of heteronuclear coupling constants in proteins.

Authors:  A Meissner; J O Duus; O W Sørensen
Journal:  J Biomol NMR       Date:  1997-07       Impact factor: 2.835

Review 6.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

7.  Single Transition-to-single Transition Polarization Transfer (ST2-PT) in [15N,1H]-TROSY.

Authors:  K V Pervushin; G Wider; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-08       Impact factor: 2.835

8.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

9.  Sensitivity improvement of transverse relaxation-optimized spectroscopy.

Authors:  M Rance; J P Loria
Journal:  J Magn Reson       Date:  1999-01       Impact factor: 2.229

10.  CO_H(N)CACB experiments for assigning backbone resonances in 13C/15N-labeled proteins.

Authors:  N Astrof; C Bracken; J Cavanagh; A G Palmer
Journal:  J Biomol NMR       Date:  1998-05       Impact factor: 2.835

View more
  7 in total

1.  Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins.

Authors:  Dominique P Frueh; Zhen-Yu J Sun; David A Vosburg; Christopher T Walsh; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

2.  Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).

Authors:  Hamid R Eghbalnia; Arash Bahrami; Liya Wang; Amir Assadi; John L Markley
Journal:  J Biomol NMR       Date:  2005-07       Impact factor: 2.835

3.  1H-filtered correlation experiments for assignment and determination of coupling constants in backbone labelled proteins.

Authors:  Alexander W Giesen; Lynnette C Bae; Christa L Barrett; Jason A Chyba; Michael M Chaykovsky; Minn-Chang Cheng; Jenny H Murray; Ed J Oliver; Sarah M Sullivan; Jonathan Miles Brown; Steve W Homans
Journal:  J Biomol NMR       Date:  2002-01       Impact factor: 2.835

4.  Intraresidual HNCA: an experiment for correlating only intraresidual backbone resonances.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2002-07       Impact factor: 2.835

5.  Measurement of residual dipolar couplings from 1Halpha to 13Calpha and 15N using a simple HNCA-based experiment.

Authors:  Perttu Permi
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

6.  Side chain NMR assignments in the membrane protein OmpX reconstituted in DHPC micelles.

Authors:  Christian Hilty; César Fernández; Gerhard Wider; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2002-08       Impact factor: 2.835

Review 7.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.