Literature DB >> 9646872

The use of 2H, 13C, 15N multidimensional NMR to study the structure and dynamics of proteins.

K H Gardner1, L E Kay.   

Abstract

During the past thirty years, deuterium labeling has been used to improve the resolution and sensitivity of protein NMR spectra used in a wide variety of applications. Most recently, the combination of triple resonance experiments and 2H, 13C, 15N labeled samples has been critical to the solution structure determination of several proteins with molecular weights on the order of 30 kDa. Here we review the developments in isotopic labeling strategies, NMR pulse sequences, and structure-determination protocols that have facilitated this advance and hold promise for future NMR-based structural studies of even larger systems. As well, we detail recent progress in the use of solution 2H NMR methods to probe the dynamics of protein sidechains.

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Year:  1998        PMID: 9646872     DOI: 10.1146/annurev.biophys.27.1.357

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  182 in total

1.  A method for incorporating dipolar couplings into structure calculations in cases of (near) axial symmetry of alignment.

Authors:  G A Mueller; W Y Choy; N R Skrynnikov; L E Kay
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

2.  Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization.

Authors:  G M Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

3.  The NMR structure of the 47-kDa dimeric enzyme 3,4-dihydroxy-2-butanone-4-phosphate synthase and ligand binding studies reveal the location of the active site.

Authors:  M J Kelly; L J Ball; C Krieger; Y Yu; M Fischer; S Schiffmann; P Schmieder; R Kühne; W Bermel; A Bacher; G Richter; H Oschkinat
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

4.  Evaluation of site-directed spin labeling for characterizing protein-ligand complexes using simulated restraints.

Authors:  K L Constantine
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

5.  Direct structure refinement of high molecular weight proteins against residual dipolar couplings and carbonyl chemical shift changes upon alignment: an application to maltose binding protein.

Authors:  W Y Choy; M Tollinger; G A Mueller; L E Kay
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

6.  A novel approach for assessing macromolecular complexes combining soft-docking calculations with NMR data.

Authors:  X J Morelli; P N Palma; F Guerlesquin; A C Rigby
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

7.  A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings.

Authors:  P Dosset; J C Hus; D Marion; M Blackledge
Journal:  J Biomol NMR       Date:  2001-07       Impact factor: 2.835

8.  A new approach for obtaining sequential assignment of large proteins.

Authors:  P Permi; A Annila
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

9.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

10.  Stereospecific assignments of the isopropyl methyl groups of the membrane protein OmpX in DHPC micelles.

Authors:  Christian Hilty; Gerhard Wider; César Fernández; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

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