Literature DB >> 12652123

A new strategy for backbone resonance assignment in large proteins using a MQ-HACACO experiment.

Konstantin Pervushin1, Alexander Eletsky.   

Abstract

A new strategy of backbone resonance assignment is proposed based on a combination of the most sensitive TROSY-type triple resonance experiments such as TROSY-HNCA and TROSY-HNCO with a new 3D multiple-quantum HACACO experiment. The favourable relaxation properties of the multiple-quantum coherences and signal detection using the (13)C' antiphase coherences optimize the performance of the proposed experiment for application to larger proteins. In addition to the (1)H(N), (15)N,(13)C(alpha) and (13)C' chemical shifts the 3D multiple-quantum HACACO experiment provides assignment for the (1)H(alpha) resonances in constrast to previously proposed experiments for large proteins. The strategy is demonstrated with the 44 kDa uniformly (15)N,(13)C-labeled and fractionally 35% deuterated trimeric B. subtilis Chorismate Mutase measured at 20 degrees C and 9 degrees C. Measurements at the lower temperature indicate that the new strategy can be applied to even larger proteins with molecular weights up to 80 kDa.

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Year:  2003        PMID: 12652123     DOI: 10.1023/a:1022225711122

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  13 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

2.  A 4D TROSY-based pulse scheme for correlating 1HNi,15Ni,13Calphai,13C'i-1 chemical shifts in high molecular weight, 15N,13C, 2H labeled proteins.

Authors:  R Konrat; D Yang; L E Kay
Journal:  J Biomol NMR       Date:  1999-12       Impact factor: 2.835

3.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

4.  Assignment of 1H(N), 15N, 13C(alpha), 13CO and 13C(beta) resonances in a 67 kDa p53 dimer using 4D-TROSY NMR spectroscopy.

Authors:  F A Mulder; A Ayed; D Yang; C H Arrowsmith; L E Kay
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

5.  Application of multiple-quantum line narrowing with simultaneous 1H and 13C constant-time scalar-coupling evolution in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments.

Authors:  G V Swapna; C B Rios; Z Shang; G T Montelione
Journal:  J Biomol NMR       Date:  1997-01       Impact factor: 2.835

6.  [13C]-constant-time [15N,1H]-TROSY-HNCA for sequential assignments of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

7.  TROSY NMR with partially deuterated proteins.

Authors:  A Eletsky; A Kienhöfer; K Pervushin
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

8.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

9.  Improved sensitivity and coherence selection for [15N,1H]-TROSY elements in triple resonance experiments.

Authors:  M Salzmann; G Wider; K Pervushin; K Wüthrich
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

10.  Longitudinal (1)H relaxation optimization in TROSY NMR spectroscopy.

Authors:  Konstantin Pervushin; Beat Vögeli; Alexander Eletsky
Journal:  J Am Chem Soc       Date:  2002-10-30       Impact factor: 15.419

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  13 in total

1.  A novel strategy for the assignment of side-chain resonances in completely deuterated large proteins using 13C spectroscopy.

Authors:  Alexander Eletsky; Osvaldo Moreira; Helena Kovacs; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  (13)C-(13)C NOESY: a constructive use of (13)C-(13)C spin-diffusion.

Authors:  Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Claudio Luchinat; Roberta Pierattelli
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

3.  Detection of C',Calpha correlations in proteins using a new time- and sensitivity-optimal experiment.

Authors:  Donghan Lee; Beat Vögeli; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

4.  Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR.

Authors:  Jinfa Ying; Jordan H Chill; John M Louis; Ad Bax
Journal:  J Biomol NMR       Date:  2007-01-24       Impact factor: 2.835

5.  Projected [(1)H, (15)N]-HMQC-[ (1)H, (1)H]-NOESY for large molecular systems: application to a 121 kDa protein-DNA complex.

Authors:  Veniamin Galius; Chrysoula Leontiou; Timothy Richmond; Gerhard Wider
Journal:  J Biomol NMR       Date:  2008-01-30       Impact factor: 2.835

6.  A six-dimensional alpha proton detection-based APSY experiment for backbone assignment of intrinsically disordered proteins.

Authors:  Xuejun Yao; Stefan Becker; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2014-11-04       Impact factor: 2.835

7.  Evaluation of 15N-detected H-N correlation experiments on increasingly large RNAs.

Authors:  Robbin Schnieders; Christian Richter; Sven Warhaut; Vanessa de Jesus; Sara Keyhani; Elke Duchardt-Ferner; Heiko Keller; Jens Wöhnert; Lars T Kuhn; Alexander L Breeze; Wolfgang Bermel; Harald Schwalbe; Boris Fürtig
Journal:  J Biomol NMR       Date:  2017-09-06       Impact factor: 2.835

8.  13C-direct detected NMR experiments for the sequential J-based resonance assignment of RNA oligonucleotides.

Authors:  Christian Richter; Helena Kovacs; Janina Buck; Anna Wacker; Boris Fürtig; Wolfgang Bermel; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2010-06-11       Impact factor: 2.835

9.  Dynamic thiolation-thioesterase structure of a non-ribosomal peptide synthetase.

Authors:  Dominique P Frueh; Haribabu Arthanari; Alexander Koglin; David A Vosburg; Andrew E Bennett; Christopher T Walsh; Gerhard Wagner
Journal:  Nature       Date:  2008-08-14       Impact factor: 49.962

Review 10.  Practical aspects of NMR signal assignment in larger and challenging proteins.

Authors:  Dominique P Frueh
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-12-15       Impact factor: 9.795

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