Literature DB >> 12449417

Novel projected 4D triple resonance experiments for polypeptide backbone chemical shift assignment.

Youlin Xia1, Cheryl H Arrowsmith, Thomas Szyperski.   

Abstract

Here we present a novel suite of projected 4D triple-resonance NMR experiments for efficient sequential assignment of polypeptide backbone chemical shifts in 13C/15N doubly labeled proteins. In the 3D HNN[CAHA] and 3D HNN(CO)[CAHA] experiments. the 13C(alpha) and lHalpha chemical shifts evolve in a common dimension and are simultaneously detected in quadrature. These experiments are particularly useful for the assignment of glycine-rich polypeptide segments. Appropriate setting of the 1H radiofrequency carrier allows one to place cross peaks correlating either backbone 15N/1H(N)/13C(alpha) or 15N/1H(N)/H(alpha) chemical shifts in separate spectral regions. Hence, peak overlap is not increased when compared with the conventional 3D HNNCA and HNN(CA)HA. 3D HNN[CAHA] and 3D HNN(CO)[CAHA] are complemented by 3D reduced-dimensionality (RD) HNN COCA and NNCACO, where 13C(alpha) and 13C' chemical shifts evolve in a common dimension. The 13C(alpha), shift is detected in quadrature, which yields peak pairs encoding the 13C' chemical shift in an in-phase splitting. This suite of four experiments promises to be of value for automated high-throughput NMR structure determination in structural genomics, where the requirement to independently sample many indirect dimensions in a large number of NMR experiments may prevent one from accurately adjusting NMR measurement times to spectrometer sensitivity.

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Year:  2002        PMID: 12449417     DOI: 10.1023/a:1020605618150

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  17 in total

Review 1.  Protein NMR spectroscopy in structural genomics.

Authors:  G T Montelione; D Zheng; Y J Huang; K C Gunsalus; T Szyperski
Journal:  Nat Struct Biol       Date:  2000-11

2.  An NMR approach to structural proteomics.

Authors:  Adelinda Yee; Xiaoqing Chang; Antonio Pineda-Lucena; Bin Wu; Anthony Semesi; Brian Le; Theresa Ramelot; Gregory M Lee; Sudeepa Bhattacharyya; Pablo Gutierrez; Aleksej Denisov; Chang-Hun Lee; John R Cort; Guennadi Kozlov; Jack Liao; Grzegorz Finak; Limin Chen; David Wishart; Weontae Lee; Lawrence P McIntosh; Kalle Gehring; Michael A Kennedy; Aled M Edwards; Cheryl H Arrowsmith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-19       Impact factor: 11.205

3.  Automated analysis of protein NMR assignments using methods from artificial intelligence.

Authors:  D E Zimmerman; C A Kulikowski; Y Huang; W Feng; M Tashiro; S Shimotakahara; C Chien; R Powers; G T Montelione
Journal:  J Mol Biol       Date:  1997-06-20       Impact factor: 5.469

4.  Protein heteronuclear NMR assignments using mean-field simulated annealing.

Authors:  N E Buchler; E R Zuiderweg; H Wang; R A Goldstein
Journal:  J Magn Reson       Date:  1997-03       Impact factor: 2.229

5.  High-resolution 3D HNCOCA experiment applied to a 28 kDa paramagnetic protein.

Authors:  B Brutscher; F Cordier; J P Simorre; M Caffrey; D Marion
Journal:  J Biomol NMR       Date:  1995-02       Impact factor: 2.835

6.  Novel 2D and 3D multiple-quantum bi-directional HCNCH experiments for the correlation of ribose and base protons/carbons in 13C/15N labeled RNA.

Authors:  W Hu; Y Q Gosser; W Xu; D J Patel
Journal:  J Biomol NMR       Date:  2001-06       Impact factor: 2.835

7.  Protein dynamics studied by rotating frame 15N spin relaxation times.

Authors:  T Szyperski; P Luginbühl; G Otting; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

8.  Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease.

Authors:  L E Kay; D A Torchia; A Bax
Journal:  Biochemistry       Date:  1989-11-14       Impact factor: 3.162

9.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

10.  High-resolution detection of five frequencies in a single 3D spectrum: HNHCACO--a bidirectional coherence transfer experiment.

Authors:  Y Pang; L Zeng; A V Kurochkin; E R Zuiderweg
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

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  7 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  Multiple quadrature detection in reduced dimensionality experiments.

Authors:  Wiktor Koźmiński; Igor Zhukov
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

3.  GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

4.  G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment.

Authors:  Hanudatta S Atreya; Thomas Szyperski
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

5.  (3,2)D GFT-NMR experiments for fast data collection from proteins.

Authors:  Youlin Xia; Guang Zhu; Sudha Veeraraghavan; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

6.  The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold.

Authors:  Catherine Herve du Penhoat; Hanudatta S Atreya; Yang Shen; Gaohua Liu; Thomas B Acton; Rong Xiao; Zhaohui Li; Diana Murray; Gaetano T Montelione; Thomas Szyperski
Journal:  Protein Sci       Date:  2004-05       Impact factor: 6.725

7.  Triple resonance MAS NMR with (13C, 15N) labelled molecules: reduced dimensionality data acquisition via 13C-15N heteronuclear two-spin coherence transfer pathways.

Authors:  Jörg Leppert; Bert Heise; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

  7 in total

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