Literature DB >> 20406909

Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering.

Hyun Sun Cho1, Naranbaatar Dashdorj, Friedrich Schotte, Timothy Graber, Robert Henning, Philip Anfinrud.   

Abstract

We have developed a time-resolved x-ray scattering diffractometer capable of probing structural dynamics of proteins in solution with 100-ps time resolution. This diffractometer, developed on the ID14B BioCARS (Consortium for Advanced Radiation Sources) beamline at the Advanced Photon Source, records x-ray scattering snapshots over a broad range of q spanning 0.02-2.5 A(-1), thereby providing simultaneous coverage of the small-angle x-ray scattering (SAXS) and wide-angle x-ray scattering (WAXS) regions. To demonstrate its capabilities, we have tracked structural changes in myoglobin as it undergoes a photolysis-induced transition from its carbon monoxy form (MbCO) to its deoxy form (Mb). Though the differences between the MbCO and Mb crystal structures are small (rmsd < 0.2 A), time-resolved x-ray scattering differences recorded over 8 decades of time from 100 ps to 10 ms are rich in structure, illustrating the sensitivity of this technique. A strong, negative-going feature in the SAXS region appears promptly and corresponds to a sudden > 22 A(3) volume expansion of the protein. The ensuing conformational relaxation causes the protein to contract to a volume approximately 2 A(3) larger than MbCO within approximately 10 ns. On the timescale for CO escape from the primary docking site, another change in the SAXS/WAXS fingerprint appears, demonstrating sensitivity to the location of the dissociated CO. Global analysis of the SAXS/WAXS patterns recovered time-independent scattering fingerprints for four intermediate states of Mb. These SAXS/WAXS fingerprints provide stringent constraints for putative models of conformational states and structural transitions between them.

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Year:  2010        PMID: 20406909      PMCID: PMC2867760          DOI: 10.1073/pnas.1002951107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering.

Authors:  L Pollack; M W Tate; N C Darnton; J B Knight; S M Gruner; W A Eaton; R H Austin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  A steric mechanism for inhibition of CO binding to heme proteins.

Authors:  G S Kachalova; A N Popov; H D Bartunik
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

3.  Time resolved collapse of a folding protein observed with small angle x-ray scattering.

Authors:  L Pollack; M W Tate; A C Finnefrock; C Kalidas; S Trotter; N C Darnton; L Lurio; R H Austin; C A Batt; S M Gruner; S G Mochrie
Journal:  Phys Rev Lett       Date:  2001-05-21       Impact factor: 9.161

4.  Solution-phase structural characterization of supramolecular assemblies by molecular diffraction.

Authors:  Jodi L O'Donnell; Xiaobing Zuo; Andrew J Goshe; Lev Sarkisov; Randall Q Snurr; Joseph T Hupp; David M Tiede
Journal:  J Am Chem Soc       Date:  2007-02-14       Impact factor: 15.419

5.  Small-angle X-ray scattering from RNA, proteins, and protein complexes.

Authors:  Jan Lipfert; Sebastian Doniach
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

6.  Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.

Authors:  Marco Cammarata; Matteo Levantino; Friedrich Schotte; Philip A Anfinrud; Friederike Ewald; Jungkweon Choi; Antonio Cupane; Michael Wulff; Hyotcherl Ihee
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

7.  Direct observations of ligand dynamics in hemoglobin by subpicosecond infrared spectroscopy.

Authors:  P A Anfinrud; C Han; R M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

8.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

9.  Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates.

Authors:  V Jayaraman; K R Rodgers; I Mukerji; T G Spiro
Journal:  Science       Date:  1995-09-29       Impact factor: 47.728

10.  Characterization of proteins with wide-angle X-ray solution scattering (WAXS).

Authors:  Lee Makowski
Journal:  J Struct Funct Genomics       Date:  2010-01-05
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  66 in total

1.  Rapid readout detector captures protein time-resolved WAXS.

Authors:  Sebastian Westenhoff; Erik Malmerberg; David Arnlund; Linda Johansson; Elena Nazarenko; Marco Cammarata; Jan Davidsson; Vincent Chaptal; Jeff Abramson; Gergely Katona; Andreas Menzel; Richard Neutze
Journal:  Nat Methods       Date:  2010-09-29       Impact factor: 28.547

2.  NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.

Authors:  Mahsa Silatani; Frederico A Lima; Thomas J Penfold; Jochen Rittmann; Marco E Reinhard; Hannelore M Rittmann-Frank; Camelia Borca; Daniel Grolimund; Christopher J Milne; Majed Chergui
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-05       Impact factor: 11.205

3.  Full kinetics of CO entry, internal diffusion, and exit in myoglobin from transition-path theory simulations.

Authors:  Tang-Qing Yu; Mauro Lapelosa; Eric Vanden-Eijnden; Cameron F Abrams
Journal:  J Am Chem Soc       Date:  2015-02-23       Impact factor: 15.419

4.  Nonequilibrium dynamics of helix reorganization observed by transient 2D IR spectroscopy.

Authors:  Matthew J Tucker; Mohannad Abdo; Joel R Courter; Jianxin Chen; Stephen P Brown; Amos B Smith; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-08       Impact factor: 11.205

5.  Insulin hexamer dissociation dynamics revealed by photoinduced T-jumps and time-resolved X-ray solution scattering.

Authors:  Dolev Rimmerman; Denis Leshchev; Darren J Hsu; Jiyun Hong; Baxter Abraham; Irina Kosheleva; Robert Henning; Lin X Chen
Journal:  Photochem Photobiol Sci       Date:  2018-07-11       Impact factor: 3.982

6.  Probing anisotropic structure changes in proteins with picosecond time-resolved small-angle X-ray scattering.

Authors:  Hyun Sun Cho; Friedrich Schotte; Naranbaatar Dashdorj; John Kyndt; Philip A Anfinrud
Journal:  J Phys Chem B       Date:  2013-10-30       Impact factor: 2.991

7.  BioCARS: a synchrotron resource for time-resolved X-ray science.

Authors:  T Graber; S Anderson; H Brewer; Y S Chen; H S Cho; N Dashdorj; R W Henning; I Kosheleva; G Macha; M Meron; R Pahl; Z Ren; S Ruan; F Schotte; V Srajer; P J Viccaro; F Westferro; P Anfinrud; K Moffat
Journal:  J Synchrotron Radiat       Date:  2011-05-12       Impact factor: 2.616

8.  Upgrade of MacCHESS facility for X-ray scattering of biological macromolecules in solution.

Authors:  Alvin Samuel Acerbo; Michael J Cook; Richard Edward Gillilan
Journal:  J Synchrotron Radiat       Date:  2015-01-01       Impact factor: 2.616

Review 9.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

10.  Dynamics of Quaternary Structure Transitions in R-State Carbonmonoxyhemoglobin Unveiled in Time-Resolved X-ray Scattering Patterns Following a Temperature Jump.

Authors:  Hyun Sun Cho; Friedrich Schotte; Valentyn Stadnytskyi; Anthony DiChiara; Robert Henning; Philip Anfinrud
Journal:  J Phys Chem B       Date:  2018-10-16       Impact factor: 2.991

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