Literature DB >> 18806790

Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.

Marco Cammarata1, Matteo Levantino, Friedrich Schotte, Philip A Anfinrud, Friederike Ewald, Jungkweon Choi, Antonio Cupane, Michael Wulff, Hyotcherl Ihee.   

Abstract

We demonstrate tracking of protein structural changes with time-resolved wide-angle X-ray scattering (TR-WAXS) with nanosecond time resolution. We investigated the tertiary and quaternary conformational changes of human hemoglobin under nearly physiological conditions triggered by laser-induced ligand photolysis. We also report data on optically induced tertiary relaxations of myoglobin and refolding of cytochrome c to illustrate the wide applicability of the technique. By providing insights into the structural dynamics of proteins functioning in their natural environment, TR-WAXS complements and extends results obtained with time-resolved optical spectroscopy and X-ray crystallography.

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Year:  2008        PMID: 18806790      PMCID: PMC3159148          DOI: 10.1038/nmeth.1255

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  26 in total

1.  Quaternary conformational changes in human hemoglobin studied by laser photolysis of carboxyhemoglobin.

Authors:  C A Sawicki; Q H Gibson
Journal:  J Biol Chem       Date:  1976-03-25       Impact factor: 5.157

2.  Structural hierarchy of several proteins observed by wide-angle solution scattering.

Authors:  Mitsuhiro Hirai; Hiroki Iwase; Tomohiro Hayakawa; Keiko Miura; Katsuaki Inoue
Journal:  J Synchrotron Radiat       Date:  2002-06-30       Impact factor: 2.616

3.  Quaternary structure of hemoglobin in solution.

Authors:  Jonathan A Lukin; Georg Kontaxis; Virgil Simplaceanu; Yue Yuan; Ad Bax; Chien Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-13       Impact factor: 11.205

4.  Application of linear free energy relations to protein conformational changes: the quaternary structural change of hemoglobin.

Authors:  W A Eaton; E R Henry; J Hofrichter
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-15       Impact factor: 11.205

5.  The crystal structure of human deoxyhaemoglobin at 1.74 A resolution.

Authors:  G Fermi; M F Perutz; B Shaanan; R Fourme
Journal:  J Mol Biol       Date:  1984-05-15       Impact factor: 5.469

6.  Nanosecond absorption spectroscopy of hemoglobin: elementary processes in kinetic cooperativity.

Authors:  J Hofrichter; J H Sommer; E R Henry; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

7.  Fast coordination changes in cytochrome c do not necessarily imply folding.

Authors:  A Arcovito; S Gianni; M Brunori; C Travaglini-Allocatelli; A Bellelli
Journal:  J Biol Chem       Date:  2001-08-03       Impact factor: 5.157

8.  Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering.

Authors:  Shuji Akiyama; Satoshi Takahashi; Tetsunari Kimura; Koichiro Ishimori; Isao Morishima; Yukihiro Nishikawa; Tetsuro Fujisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

9.  Time-resolved absorption and UV resonance Raman spectra reveal stepwise formation of T quaternary contacts in the allosteric pathway of hemoglobin.

Authors:  Gurusamy Balakrishnan; Martin A Case; Alex Pevsner; Xiaojie Zhao; Charbel Tengroth; George L McLendon; Thomas G Spiro
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

10.  Watching a protein as it functions with 150-ps time-resolved x-ray crystallography.

Authors:  Friedrich Schotte; Manho Lim; Timothy A Jackson; Aleksandr V Smirnov; Jayashree Soman; John S Olson; George N Phillips; Michael Wulff; Philip A Anfinrud
Journal:  Science       Date:  2003-06-20       Impact factor: 47.728

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  85 in total

1.  Cooperative macromolecular device revealed by meta-analysis of static and time-resolved structures.

Authors:  Zhong Ren; Vukica Srajer; James E Knapp; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-14       Impact factor: 11.205

2.  Conformational analysis of a genetically encoded FRET biosensor by SAXS.

Authors:  Haydyn D T Mertens; Alen Piljić; Carsten Schultz; Dmitri I Svergun
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

3.  Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering.

Authors:  Hyun Sun Cho; Naranbaatar Dashdorj; Friedrich Schotte; Timothy Graber; Robert Henning; Philip Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-06       Impact factor: 11.205

4.  Rapid readout detector captures protein time-resolved WAXS.

Authors:  Sebastian Westenhoff; Erik Malmerberg; David Arnlund; Linda Johansson; Elena Nazarenko; Marco Cammarata; Jan Davidsson; Vincent Chaptal; Jeff Abramson; Gergely Katona; Andreas Menzel; Richard Neutze
Journal:  Nat Methods       Date:  2010-09-29       Impact factor: 28.547

5.  Insulin hexamer dissociation dynamics revealed by photoinduced T-jumps and time-resolved X-ray solution scattering.

Authors:  Dolev Rimmerman; Denis Leshchev; Darren J Hsu; Jiyun Hong; Baxter Abraham; Irina Kosheleva; Robert Henning; Lin X Chen
Journal:  Photochem Photobiol Sci       Date:  2018-07-11       Impact factor: 3.982

Review 6.  X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis.

Authors:  David M Tiede; Kristy L Mardis; Xiaobing Zuo
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

7.  Probing anisotropic structure changes in proteins with picosecond time-resolved small-angle X-ray scattering.

Authors:  Hyun Sun Cho; Friedrich Schotte; Naranbaatar Dashdorj; John Kyndt; Philip A Anfinrud
Journal:  J Phys Chem B       Date:  2013-10-30       Impact factor: 2.991

8.  SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules.

Authors:  Jaydeep Bardhan; Sanghyun Park; Lee Makowski
Journal:  J Appl Crystallogr       Date:  2009-09-08       Impact factor: 3.304

9.  Statistical mechanics of Monod-Wyman-Changeux (MWC) models.

Authors:  Sarah Marzen; Hernan G Garcia; Rob Phillips
Journal:  J Mol Biol       Date:  2013-03-14       Impact factor: 5.469

10.  Dynamics of Quaternary Structure Transitions in R-State Carbonmonoxyhemoglobin Unveiled in Time-Resolved X-ray Scattering Patterns Following a Temperature Jump.

Authors:  Hyun Sun Cho; Friedrich Schotte; Valentyn Stadnytskyi; Anthony DiChiara; Robert Henning; Philip Anfinrud
Journal:  J Phys Chem B       Date:  2018-10-16       Impact factor: 2.991

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