Literature DB >> 20049539

Characterization of proteins with wide-angle X-ray solution scattering (WAXS).

Lee Makowski1.   

Abstract

X-ray solution scattering in both the small-angle (SAXS) and wide-angle (WAXS) regimes is making an increasing impact on our understanding of biomolecular complexes. The accurate calculation of WAXS patterns from atomic coordinates has positioned the approach for rapid growth and integration with existing Structural Genomics efforts. WAXS data are sensitive to small structural changes in proteins; useful for calculation of the pair-distribution function at relatively high resolution; provides a means to characterize the breadth of the structural ensemble in solution; and can be used to identify proteins with similar folds. WAXS data are often used to test structural models, identify structural similarities and characterize structural changes. WAXS is highly complementary to crystallography and NMR. It holds great potential for the testing of structural models of proteins; identification of proteins that may exhibit novel folds; characterization of unfolded or natively disordered proteins; and detection of structural changes associated with protein function.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20049539      PMCID: PMC3057577          DOI: 10.1007/s10969-009-9075-x

Source DB:  PubMed          Journal:  J Struct Funct Genomics        ISSN: 1345-711X


  39 in total

1.  Reconstruction of protein form with X-ray solution scattering and a genetic algorithm.

Authors:  P Chacón; J F Díaz; F Morán; J M Andreu
Journal:  J Mol Biol       Date:  2000-06-23       Impact factor: 5.469

2.  Protein structure prediction and structural genomics.

Authors:  D Baker; A Sali
Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

3.  Hierarchical map of protein unfolding and refolding at thermal equilibrium revealed by wide-angle X-ray scattering.

Authors:  Mitsuhiro Hirai; Masaharu Koizumi; Tomohiro Hayakawa; Hiroshi Takahashi; Satoru Abe; Harutaka Hirai; Keiko Miura; Katsuaki Inoue
Journal:  Biochemistry       Date:  2004-07-20       Impact factor: 3.162

4.  Global rigid body modeling of macromolecular complexes against small-angle scattering data.

Authors:  Maxim V Petoukhov; Dmitri I Svergun
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

5.  Protein structure space is much more than the sum of its folds.

Authors:  Barry Honig
Journal:  Nat Struct Mol Biol       Date:  2007-06       Impact factor: 15.369

6.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

7.  A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes.

Authors:  Sichun Yang; Sanghyun Park; Lee Makowski; Benoît Roux
Journal:  Biophys J       Date:  2009-06-03       Impact factor: 4.033

Review 8.  Recent developments in solution x-ray scattering.

Authors:  V Luzzati; A Tardieu
Journal:  Annu Rev Biophys Bioeng       Date:  1980

9.  Rapid calculation of the solution scattering profile from a macromolecule of known structure.

Authors:  E E Lattman
Journal:  Proteins       Date:  1989

10.  HIV-1 protease substrate binding and product release pathways explored with coarse-grained molecular dynamics.

Authors:  Joanna Trylska; Valentina Tozzini; Chia-en A Chang; J Andrew McCammon
Journal:  Biophys J       Date:  2007-03-23       Impact factor: 4.033

View more
  18 in total

1.  Multi-wavelength anomalous diffraction using medium-angle X-ray solution scattering (MADMAX).

Authors:  L Makowski; J Bardhan; D Gore; D J Rodi; R F Fischetti
Journal:  Biophys J       Date:  2012-02-21       Impact factor: 4.033

2.  Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering.

Authors:  Hyun Sun Cho; Naranbaatar Dashdorj; Friedrich Schotte; Timothy Graber; Robert Henning; Philip Anfinrud
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-06       Impact factor: 11.205

3.  Ensembles of a small number of conformations with relative populations.

Authors:  Vijay Vammi; Guang Song
Journal:  J Biomol NMR       Date:  2015-10-17       Impact factor: 2.835

Review 4.  Supramolecular coordination: self-assembly of finite two- and three-dimensional ensembles.

Authors:  Rajesh Chakrabarty; Partha Sarathi Mukherjee; Peter J Stang
Journal:  Chem Rev       Date:  2011-08-24       Impact factor: 60.622

5.  Upgrade of MacCHESS facility for X-ray scattering of biological macromolecules in solution.

Authors:  Alvin Samuel Acerbo; Michael J Cook; Richard Edward Gillilan
Journal:  J Synchrotron Radiat       Date:  2015-01-01       Impact factor: 2.616

6.  Spermine Condenses DNA, but Not RNA Duplexes.

Authors:  Andrea M Katz; Igor S Tolokh; Suzette A Pabit; Nathan Baker; Alexey V Onufriev; Lois Pollack
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

7.  Direct Evidence for the Effect of Glycerol on Protein Hydration and Thermal Structural Transition.

Authors:  Mitsuhiro Hirai; Satoshi Ajito; Masaaki Sugiyama; Hiroki Iwase; Shin-Ichi Takata; Nobutaka Shimizu; Noriyuki Igarashi; Anne Martel; Lionel Porcar
Journal:  Biophys J       Date:  2018-07-17       Impact factor: 4.033

8.  WAXS studies of the structural diversity of hemoglobin in solution.

Authors:  L Makowski; J Bardhan; D Gore; J Lal; S Mandava; S Park; D J Rodi; N T Ho; C Ho; R F Fischetti
Journal:  J Mol Biol       Date:  2011-03-21       Impact factor: 5.469

9.  Biomolecular solution X-ray scattering at the National Synchrotron Light Source.

Authors:  Marc Allaire; Lin Yang
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

10.  Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations.

Authors:  Suzette A Pabit; Andrea M Katz; Igor S Tolokh; Aleksander Drozdetski; Nathan Baker; Alexey V Onufriev; Lois Pollack
Journal:  J Chem Phys       Date:  2016-05-28       Impact factor: 3.488

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.