Literature DB >> 26438842

NO binding kinetics in myoglobin investigated by picosecond Fe K-edge absorption spectroscopy.

Mahsa Silatani1, Frederico A Lima1, Thomas J Penfold2, Jochen Rittmann1, Marco E Reinhard1, Hannelore M Rittmann-Frank1, Camelia Borca3, Daniel Grolimund3, Christopher J Milne4, Majed Chergui5.   

Abstract

Diatomic ligands in hemoproteins and the way they bind to the active center are central to the protein's function. Using picosecond Fe K-edge X-ray absorption spectroscopy, we probe the NO-heme recombination kinetics with direct sensitivity to the Fe-NO binding after 532-nm photoexcitation of nitrosylmyoglobin (MbNO) in physiological solutions. The transients at 70 and 300 ps are identical, but they deviate from the difference between the static spectra of deoxymyoglobin and MbNO, showing the formation of an intermediate species. We propose the latter to be a six-coordinated domed species that is populated on a timescale of ∼ 200 ps by recombination with NO ligands. This work shows the feasibility of ultrafast pump-probe X-ray spectroscopic studies of proteins in physiological media, delivering insight into the electronic and geometric structure of the active center.

Entities:  

Keywords:  X-ray absorption; ligand binding; nitrosylmyoglobin; picosecond; pump–probe

Mesh:

Substances:

Year:  2015        PMID: 26438842      PMCID: PMC4620891          DOI: 10.1073/pnas.1424446112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Full potential x-ray absorption calculations using time dependent density functional theory.

Authors:  O Bunău; Y Joly
Journal:  J Phys Condens Matter       Date:  2012-04-25       Impact factor: 2.333

2.  Protein conformation-controlled rebinding barrier of NO and its binding trajectories in myoglobin and hemoglobin at room temperature.

Authors:  Seongheun Kim; Manho Lim
Journal:  J Phys Chem B       Date:  2012-05-11       Impact factor: 2.991

3.  Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins.

Authors:  Sergei G Kruglik; Byung-Kuk Yoo; Stefan Franzen; Marten H Vos; Jean-Louis Martin; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

4.  Ligand binding and protein relaxation in heme proteins: a room temperature analysis of NO geminate recombination.

Authors:  J W Petrich; J C Lambry; K Kuczera; M Karplus; C Poyart; J L Martin
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

5.  Effect of the damping function in dispersion corrected density functional theory.

Authors:  Stefan Grimme; Stephan Ehrlich; Lars Goerigk
Journal:  J Comput Chem       Date:  2011-03-01       Impact factor: 3.376

6.  Spin-dependent mechanism for diatomic ligand binding to heme.

Authors:  Stefan Franzen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-11       Impact factor: 11.205

7.  Time-resolved resonance Raman study on ultrafast structural relaxation and vibrational cooling of photodissociated carbonmonoxy myoglobin.

Authors:  Teizo Kitagawa; Nami Haruta; Yasuhisa Mizutani
Journal:  Biopolymers       Date:  2002       Impact factor: 2.505

8.  Ultrafast measurements of geminate recombination of NO with site-specific mutants of human myoglobin.

Authors:  J W Petrich; J C Lambry; S Balasubramanian; D G Lambright; S G Boxer; J L Martin
Journal:  J Mol Biol       Date:  1994-05-06       Impact factor: 5.469

9.  Primary protein response after ligand photodissociation in carbonmonoxy myoglobin.

Authors:  Akira Sato; Ying Gao; Teizo Kitagawa; Yasuhisa Mizutani
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-21       Impact factor: 11.205

10.  Time-Resolved X-ray Absorption Spectroscopy of Carbon Monoxide-Myoglobin Recombination After Laser Photolysis.

Authors:  D M Mills; A Lewis; A Harootunian; J Huang; B Smith
Journal:  Science       Date:  1984-02-24       Impact factor: 47.728

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  5 in total

1.  Interplays of electron and nuclear motions along CO dissociation trajectory in myoglobin revealed by ultrafast X-rays and quantum dynamics calculations.

Authors:  Megan L Shelby; Andrew Wildman; Dugan Hayes; Michael W Mara; Patrick J Lestrange; Marco Cammarata; Lodovico Balducci; Maxim Artamonov; Henrik T Lemke; Diling Zhu; Tamar Seideman; Brian M Hoffman; Xiaosong Li; Lin X Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-06       Impact factor: 12.779

Review 2.  Implications of short time scale dynamics on long time processes.

Authors:  Krystel El Hage; Sebastian Brickel; Sylvain Hermelin; Geoffrey Gaulier; Cédric Schmidt; Luigi Bonacina; Siri C van Keulen; Swarnendu Bhattacharyya; Majed Chergui; Peter Hamm; Ursula Rothlisberger; Jean-Pierre Wolf; Markus Meuwly
Journal:  Struct Dyn       Date:  2017-12-22       Impact factor: 2.920

3.  Time-resolved X-ray spectroscopies of chemical systems: New perspectives.

Authors:  Majed Chergui
Journal:  Struct Dyn       Date:  2016-05-31       Impact factor: 2.920

4.  Perspective: Opportunities for ultrafast science at SwissFEL.

Authors:  Rafael Abela; Paul Beaud; Jeroen A van Bokhoven; Majed Chergui; Thomas Feurer; Johannes Haase; Gerhard Ingold; Steven L Johnson; Gregor Knopp; Henrik Lemke; Chris J Milne; Bill Pedrini; Peter Radi; Gebhard Schertler; Jörg Standfuss; Urs Staub; Luc Patthey
Journal:  Struct Dyn       Date:  2018-01-08       Impact factor: 2.920

5.  Solvent Composition Drives the Rebinding Kinetics of Nitric Oxide to Microperoxidase.

Authors:  Padmabati Mondal; Markus Meuwly
Journal:  Sci Rep       Date:  2018-03-27       Impact factor: 4.379

  5 in total

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