Literature DB >> 20155902

High-resolution 3D CANCA NMR experiments for complete mainchain assignments using C(alpha) direct detection.

Koh Takeuchi1, Dominique P Frueh, Sven G Hyberts, Zhen-Yu J Sun, Gerhard Wagner.   

Abstract

The primary limitation of solution state NMR with larger, highly dynamic, or paramagnetic systems originates from signal losses due to fast transverse relaxation. This is related to the high gyromagnetic ratio gamma of protons, which are usually detected. Thus, it is attractive to consider detection of nuclei with lower gamma, such as (13)C, for extending the size limits of NMR. Here, we present an approach for complete assignment of C(alpha) and N resonances in fast relaxing proteins using a C(alpha) detected 3D CANCA experiment for perdeuterated proteins. The CANCA experiment correlates alpha carbons with the sequentially adjacent and succeeding nitrogen and alpha carbons. This enables elongation of the chain of assigned residues simply by navigating along both nitrogen and carbon dimensions using a "stairway" assignment procedure. The simultaneous use of both C(alpha) and N sequential connectivities makes the experiment more robust than conventional 3D experiments, which rely solely on a single (13)C indirect dimension for sequential information. The 3D CANCA experiment, which is very useful for mainchain assignments of higher molecular weight proteins at high magnetic field, also provides an attractive alterative for smaller proteins. Two versions of the experiment are described for samples that are (13)C labeled either uniformly or at alternate positions for removing one-bond (13)C-(13)C couplings. To achieve both high resolution and sensitivity, extensive nonuniform sampling was employed. Adding longitudinal relaxation enhancement agents can allow for shorter recycling delays, decreased measuring time, or enhanced sensitivity.

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Year:  2010        PMID: 20155902      PMCID: PMC2832079          DOI: 10.1021/ja907717b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

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2.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

3.  Protonless NMR experiments for sequence-specific assignment of backbone nuclei in unfolded proteins.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Yong-Min Lee; Claudio Luchinat; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2006-03-29       Impact factor: 15.419

4.  A method for C(alpha) direct-detection in protonless NMR.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Manolis Matzapetakis; Roberta Pierattelli; Elizabeth C Theil; Paola Turano
Journal:  J Magn Reson       Date:  2007-08-02       Impact factor: 2.229

5.  Alternate 13C-12C labeling for complete mainchain resonance assignments using C alpha direct-detection with applicability toward fast relaxing protein systems.

Authors:  Koh Takeuchi; Zhen-Yu J Sun; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2008-12-24       Impact factor: 15.419

6.  Ultrahigh-resolution (1)H-(13)C HSQC spectra of metabolite mixtures using nonlinear sampling and forward maximum entropy reconstruction.

Authors:  Sven G Hyberts; Gregory J Heffron; Nestor G Tarragona; Kirty Solanky; Katherine A Edmonds; Harry Luithardt; Jasna Fejzo; Michael Chorev; Huseyin Aktas; Kimberly Colson; Kenneth H Falchuk; Jose A Halperin; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2007-03-28       Impact factor: 15.419

7.  Fast assignment of 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling.

Authors:  Zhen-Yu J Sun; Dominique P Frueh; Philipp Selenko; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-09       Impact factor: 2.835

8.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

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9.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

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10.  13C direct detection experiments on the paramagnetic oxidized monomeric copper, zinc superoxide dismutase.

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Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

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  14 in total

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Authors:  François-Xavier Theillet; Andres Binolfi; Stamatis Liokatis; Silvia Verzini; Philipp Selenko
Journal:  J Biomol NMR       Date:  2011-10-19       Impact factor: 2.835

2.  A six-dimensional alpha proton detection-based APSY experiment for backbone assignment of intrinsically disordered proteins.

Authors:  Xuejun Yao; Stefan Becker; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2014-11-04       Impact factor: 2.835

3.  Improving the chemical shift dispersion of multidimensional NMR spectra of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Marta Bruix; Isabella C Felli; Vasantha Kumar M V; Roberta Pierattelli; Soraya Serrano
Journal:  J Biomol NMR       Date:  2013-01-12       Impact factor: 2.835

4.  NMR detection and characterization of sialylated glycoproteins and cell surface polysaccharides.

Authors:  Adam W Barb; Darón I Freedberg; Marcos D Battistel; James H Prestegard
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

5.  Selective 13C labeling of nucleotides for large RNA NMR spectroscopy using an E. coli strain disabled in the TCA cycle.

Authors:  Chandar S Thakur; Jacob N Sama; Melantha E Jackson; Bin Chen; T Kwaku Dayie
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6.  CACA-TOCSY with alternate 13C-12C labeling: a 13Calpha direct detection experiment for mainchain resonance assignment, dihedral angle information, and amino acid type identification.

Authors:  Koh Takeuchi; Dominique P Frueh; Zhen-Yu J Sun; Sebastian Hiller; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-04-10       Impact factor: 2.835

7.  Paramagnetic relaxation enhancement for protein-observed 19F NMR as an enabling approach for efficient fragment screening.

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8.  RDC derived protein backbone resonance assignment using fragment assembly.

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Journal:  J Biomol NMR       Date:  2010-12-30       Impact factor: 2.835

Review 9.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

10.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

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