Literature DB >> 23314728

Improving the chemical shift dispersion of multidimensional NMR spectra of intrinsically disordered proteins.

Wolfgang Bermel1, Marta Bruix, Isabella C Felli, Vasantha Kumar M V, Roberta Pierattelli, Soraya Serrano.   

Abstract

Intrinsically disordered proteins (IDPs) have recently attracted the attention of the scientific community challenging the well accepted structure-function paradigm. In the characterization of the dynamic features of proteins nuclear magnetic resonance spectroscopy (NMR) is a strategic tool of investigation. However the peculiar properties of IDPs, with the lack of a unique 3D structure and their high flexibility, have a strong impact on NMR observables (low chemical shift dispersion, efficient solvent exchange broadening) and thus on the quality of NMR spectra. Key aspects to be considered in the design of new NMR experiments optimized for the study of IDPs are discussed. A new experiment, based on direct detection of (13)C(α), is proposed.

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Year:  2013        PMID: 23314728     DOI: 10.1007/s10858-013-9704-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  49 in total

Review 1.  Nuclear magnetic resonance methods for elucidation of structure and dynamics in disordered states.

Authors:  H J Dyson; P E Wright
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

Review 2.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

3.  A novel strategy for the assignment of side-chain resonances in completely deuterated large proteins using 13C spectroscopy.

Authors:  Alexander Eletsky; Osvaldo Moreira; Helena Kovacs; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

Review 4.  Disordered proteins studied by chemical shifts.

Authors:  Magnus Kjaergaard; Flemming M Poulsen
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-10-12       Impact factor: 9.795

Review 5.  Atomic-level characterization of disordered protein ensembles.

Authors:  Tanja Mittag; Julie D Forman-Kay
Journal:  Curr Opin Struct Biol       Date:  2007-01-23       Impact factor: 6.809

6.  A method for C(alpha) direct-detection in protonless NMR.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Manolis Matzapetakis; Roberta Pierattelli; Elizabeth C Theil; Paola Turano
Journal:  J Magn Reson       Date:  2007-08-02       Impact factor: 2.229

Review 7.  Recent progress in NMR spectroscopy: toward the study of intrinsically disordered proteins of increasing size and complexity.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  IUBMB Life       Date:  2012-05-04       Impact factor: 3.885

8.  13C-direct detected NMR experiments for the sequential J-based resonance assignment of RNA oligonucleotides.

Authors:  Christian Richter; Helena Kovacs; Janina Buck; Anna Wacker; Boris Fürtig; Wolfgang Bermel; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2010-06-11       Impact factor: 2.835

9.  Structural diversity in free and bound states of intrinsically disordered protein phosphatase 1 regulators.

Authors:  Joseph A Marsh; Barbara Dancheck; Michael J Ragusa; Marc Allaire; Julie D Forman-Kay; Wolfgang Peti
Journal:  Structure       Date:  2010-09-08       Impact factor: 5.006

Review 10.  Biophysical characterization of intrinsically disordered proteins.

Authors:  David Eliezer
Journal:  Curr Opin Struct Biol       Date:  2009-01-21       Impact factor: 6.809

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  12 in total

1.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2013-11-08       Impact factor: 2.835

3.  A reduced dimensionality NMR pulse sequence and an efficient protocol for unambiguous assignment in intrinsically disordered proteins.

Authors:  Jithender G Reddy; Ramakrishna V Hosur
Journal:  J Biomol NMR       Date:  2014-05-23       Impact factor: 2.835

4.  13C APSY-NMR for sequential assignment of intrinsically disordered proteins.

Authors:  Maria Grazia Murrali; Marco Schiavina; Valerio Sainati; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  J Biomol NMR       Date:  2018-02-28       Impact factor: 2.835

5.  Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy.

Authors:  Alessandro Piai; Eduardo O Calçada; Thomas Tarenzi; Alessandro Del Grande; Mihaly Varadi; Peter Tompa; Isabella C Felli; Roberta Pierattelli
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

6.  "CON-CON" assignment strategy for highly flexible intrinsically disordered proteins.

Authors:  Alessandro Piai; Tomáš Hošek; Leonardo Gonnelli; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Bernhard Brutscher; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  J Biomol NMR       Date:  2014-10-19       Impact factor: 2.835

7.  In-cell ¹³C NMR spectroscopy for the study of intrinsically disordered proteins.

Authors:  Isabella C Felli; Leonardo Gonnelli; Roberta Pierattelli
Journal:  Nat Protoc       Date:  2014-07-31       Impact factor: 13.491

8.  Dynamic ion pair behavior stabilizes single α-helices in proteins.

Authors:  Matthew Batchelor; Marcin Wolny; Emily G Baker; Emanuele Paci; Arnout P Kalverda; Michelle Peckham
Journal:  J Biol Chem       Date:  2018-12-28       Impact factor: 5.157

Review 9.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

10.  High resolution 4D HPCH experiment for sequential assignment of (13)C-labeled RNAs via phosphodiester backbone.

Authors:  Saurabh Saxena; Jan Stanek; Mirko Cevec; Janez Plavec; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2015-09-26       Impact factor: 2.835

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