Literature DB >> 28496971

Paramagnetic relaxation enhancement for protein-observed 19F NMR as an enabling approach for efficient fragment screening.

Laura M L Hawk1, Clifford T Gee1, Andrew K Urick1,2, Haitao Hu2, William C K Pomerantz1.   

Abstract

Protein-observed 19F (PrOF) NMR is an emerging tool for ligand discovery. To optimize the efficiency of PrOF NMR experiments, paramagnetic relaxation enhancement through the addition of chelated Ni(II) was used to shorten longitudinal relaxation time without causing significant line broadening. Thus enhancing relaxation time leads to shorter experiments without perturbing the binding of low- or high-affinity ligands. This method allows for time-efficient screening of potential ligands for a wide variety of proteins in the growing field of fragment-based ligand discovery.

Entities:  

Year:  2016        PMID: 28496971      PMCID: PMC5421645          DOI: 10.1039/C6RA21226C

Source DB:  PubMed          Journal:  RSC Adv        ISSN: 2046-2069            Impact factor:   3.361


  35 in total

1.  A novel strategy for the assignment of side-chain resonances in completely deuterated large proteins using 13C spectroscopy.

Authors:  Alexander Eletsky; Osvaldo Moreira; Helena Kovacs; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  Performance of cryogenic probes as a function of ionic strength and sample tube geometry.

Authors:  Markus W Voehler; Galen Collier; John K Young; Michael P Stone; Markus W Germann
Journal:  J Magn Reson       Date:  2006-09-01       Impact factor: 2.229

3.  Biased signaling pathways in β2-adrenergic receptor characterized by 19F-NMR.

Authors:  Jeffrey J Liu; Reto Horst; Vsevolod Katritch; Raymond C Stevens; Kurt Wüthrich
Journal:  Science       Date:  2012-01-19       Impact factor: 47.728

4.  NMR-based platform for fragment-based lead discovery used in screening BRD4-targeted compounds.

Authors:  Jun-Lan Yu; Tian-Tian Chen; Chen Zhou; Fu-Lin Lian; Xu-Long Tang; Yi Wen; Jing-Kang Shen; Ye-Chun Xu; Bing Xiong; Nai-Xia Zhang
Journal:  Acta Pharmacol Sin       Date:  2016-05-30       Impact factor: 6.150

5.  Leveraging kinase inhibitors to develop small molecule tools for imaging kinases by fluorescence microscopy.

Authors:  Zijuan Zhang; Nicholas Kwiatkowski; Hong Zeng; Sang Min Lim; Nathanael S Gray; Wei Zhang; Priscilla L Yang
Journal:  Mol Biosyst       Date:  2012-10

6.  19F NMR as a probe of ligand interactions with the iNOS binding site of SPRY domain-containing SOCS box protein 2.

Authors:  Eleanor W W Leung; Hiromasa Yagi; Jitendra R Harjani; Mark D Mulcair; Martin J Scanlon; Jonathan B Baell; Raymond S Norton
Journal:  Chem Biol Drug Des       Date:  2014-06-05       Impact factor: 2.817

7.  Dual Screening of BPTF and Brd4 Using Protein-Observed Fluorine NMR Uncovers New Bromodomain Probe Molecules.

Authors:  Andrew K Urick; Laura M L Hawk; Melissa K Cassel; Neeraj K Mishra; Shuai Liu; Neeta Adhikari; Wei Zhang; Camila O dos Santos; Jennifer L Hall; William C K Pomerantz
Journal:  ACS Chem Biol       Date:  2015-07-28       Impact factor: 5.100

8.  Low-conductivity buffers for high-sensitivity NMR measurements.

Authors:  Alexander E Kelly; Horng D Ou; Richard Withers; Volker Dötsch
Journal:  J Am Chem Soc       Date:  2002-10-09       Impact factor: 15.419

9.  The kinetics of lanthanide complexation by EDTA and DTPA in lactate media.

Authors:  K L Nash; D Brigham; T C Shehee; A Martin
Journal:  Dalton Trans       Date:  2012-12-28       Impact factor: 4.390

10.  Anatomy of β-strands at protein-protein interfaces.

Authors:  Andrew M Watkins; Paramjit S Arora
Journal:  ACS Chem Biol       Date:  2014-06-09       Impact factor: 5.100

View more
  5 in total

1.  2-Fluorotyrosine is a valuable but understudied amino acid for protein-observed 19F NMR.

Authors:  Peter D Ycas; Nicole Wagner; Noelle M Olsen; Riqiang Fu; William C K Pomerantz
Journal:  J Biomol NMR       Date:  2019-11-23       Impact factor: 2.835

2.  Rapid Quantification of Protein-Ligand Binding via 19F NMR Lineshape Analysis.

Authors:  Samantha S Stadmiller; Jhoan S Aguilar; Christopher A Waudby; Gary J Pielak
Journal:  Biophys J       Date:  2020-04-15       Impact factor: 4.033

3.  Protein-Engineered Nanoscale Micelles for Dynamic 19F Magnetic Resonance and Therapeutic Drug Delivery.

Authors:  Lindsay K Hill; Joseph A Frezzo; Priya Katyal; Dung Minh Hoang; Zakia Ben Youss Gironda; Cynthia Xu; Xuan Xie; Erika Delgado-Fukushima; Youssef Z Wadghiri; Jin Kim Montclare
Journal:  ACS Nano       Date:  2019-02-19       Impact factor: 15.881

4.  Meeting Proceedings ICBS2016-Translating the Power of Chemical Biology to Clinical Advances.

Authors:  Yugo Kuriki; Toru Komatsu; Peter D Ycas; Sara K Coulup; Erick J Carlson; William C K Pomerantz
Journal:  ACS Chem Biol       Date:  2017-03-17       Impact factor: 5.100

5.  Hydrolysis, polarity, and conformational impact of C-terminal partially fluorinated ethyl esters in peptide models.

Authors:  Vladimir Kubyshkin; Nediljko Budisa
Journal:  Beilstein J Org Chem       Date:  2017-11-16       Impact factor: 2.883

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.